; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0007342 (gene) of Chayote v1 genome

Gene IDSed0007342
OrganismSechium edule (Chayote v1)
DescriptionLysM domain-containing protein
Genome locationLG07:7801007..7801387
RNA-Seq ExpressionSed0007342
SyntenySed0007342
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576752.1 hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia]4.5e-3984.16Show/hide
Query:  RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVA--GGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS
        R L DVVSWYCA+ LLGLILIGSIRETSS++A A  GG++LRG+LLT R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS 
Subjt:  RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVA--GGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSS

Query:  N
        N
Subjt:  N

KGN57357.2 hypothetical protein Csa_009741 [Cucumis sativus]1.1e-4276.86Show/hide
Query:  MAAVSVP---------RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
        M  VSVP         RPL DVVSWYCAVGLLGLILIGSIRETSS+     GR+LRG+L+TWRPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPD
Subjt:  MAAVSVP---------RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD

Query:  DVFPGLVIKIISSSNSNSNPT
        DVFPGLVIKII+SS   + PT
Subjt:  DVFPGLVIKIISSSNSNSNPT

XP_004150301.1 uncharacterized protein LOC101210054 [Cucumis sativus]1.1e-4276.86Show/hide
Query:  MAAVSVP---------RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
        M  VSVP         RPL DVVSWYCAVGLLGLILIGSIRETSS+     GR+LRG+L+TWRPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPD
Subjt:  MAAVSVP---------RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD

Query:  DVFPGLVIKIISSSNSNSNPT
        DVFPGLVIKII+SS   + PT
Subjt:  DVFPGLVIKIISSSNSNSNPT

XP_008439155.1 PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]2.3e-4384.26Show/hide
Query:  SVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS
        S  RPL DVVSWYCAVGLLGLILIGSIRETSS++    GR LRG+L+TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S
Subjt:  SVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS

Query:  SNSNSNPT
        S  N+ PT
Subjt:  SNSNSNPT

XP_022157015.1 uncharacterized protein LOC111023841 [Momordica charantia]1.2e-3984.62Show/hide
Query:  RPLTDVVSWYCAVGLLGLILIGSIRE-TSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN
        RP TDVVSWYCAVG+L LILIGSIRE T SA A   GR+ RG+L+  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN
Subjt:  RPLTDVVSWYCAVGLLGLILIGSIRE-TSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN

Query:  -SNS
         SNS
Subjt:  -SNS

TrEMBL top hitse value%identityAlignment
A0A0A0L5R9 LysM domain-containing protein5.5e-4376.86Show/hide
Query:  MAAVSVP---------RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
        M  VSVP         RPL DVVSWYCAVGLLGLILIGSIRETSS+     GR+LRG+L+TWRPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPD
Subjt:  MAAVSVP---------RPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD

Query:  DVFPGLVIKIISSSNSNSNPT
        DVFPGLVIKII+SS   + PT
Subjt:  DVFPGLVIKIISSSNSNSNPT

A0A1S3AXP2 uncharacterized protein LOC1034840361.1e-4384.26Show/hide
Query:  SVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS
        S  RPL DVVSWYCAVGLLGLILIGSIRETSS++    GR LRG+L+TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S
Subjt:  SVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS

Query:  SNSNSNPT
        S  N+ PT
Subjt:  SNSNSNPT

A0A5A7VAP9 Peptidoglycan-binding LysM domain-containing protein1.1e-4384.26Show/hide
Query:  SVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS
        S  RPL DVVSWYCAVGLLGLILIGSIRETSS++    GR LRG+L+TWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKII+S
Subjt:  SVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS

Query:  SNSNSNPT
        S  N+ PT
Subjt:  SNSNSNPT

A0A6J1DRZ3 uncharacterized protein LOC1110238415.7e-4084.62Show/hide
Query:  RPLTDVVSWYCAVGLLGLILIGSIRE-TSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN
        RP TDVVSWYCAVG+L LILIGSIRE T SA A   GR+ RG+L+  RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN
Subjt:  RPLTDVVSWYCAVGLLGLILIGSIRE-TSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN

Query:  -SNS
         SNS
Subjt:  -SNS

A0A6J1J769 uncharacterized protein LOC1114831841.8e-3884Show/hide
Query:  RPLTDVVSWYCAVGLLGLILIGSIRET-SSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN
        R L DVVSWYCAV +LGLILIGSIRET SSA+A  G ++LRG+LLT R CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDDVFPGLVIKIISS N
Subjt:  RPLTDVVSWYCAVGLLGLILIGSIRET-SSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.4e-1948Show/hide
Query:  LTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTW----RP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS
        + + +SWYCAV    ++L+ S +     +     +     ++T     RP CDEIY V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I  S
Subjt:  LTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTW----RP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISS

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein2.7e-2655.66Show/hide
Query:  MAAVSVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAA--VAGGR---ILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP
        M  V+V R  ++ V+ YC V LL L L GS++ ++   +     GR   + RG  +  RPC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFP
Subjt:  MAAVSVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAA--VAGGR---ILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFP

Query:  GLVIKI
        GL+IK+
Subjt:  GLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein7.7e-2963.74Show/hide
Query:  TDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        +D+ +W  AV LL LIL+ S+RE +++ ++      RGS  + +PC+EIY+VGEGETLHTI DKCGDPFIVERNPHIHDPDDVFPGLV+KI
Subjt:  TDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCCGTCTCTGTTCCCAGACCCTTAACCGACGTCGTTTCTTGGTACTGCGCCGTGGGCCTATTGGGCCTGATTTTGATCGGGTCCATCAGAGAAACCTCCTCCGC
CGCCGCCGTCGCCGGTGGCCGGATTCTGAGAGGCAGCTTGCTGACGTGGCGGCCGTGCGATGAGATTTACGTTGTGGGAGAAGGGGAAACGCTTCACACGATTAGCGATA
AGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCACGACCCGGATGATGTCTTTCCGGGTTTGGTCATCAAAATTATCTCTTCTTCAAATTCAAATTCCAAT
CCTACCCAATTTTGA
mRNA sequenceShow/hide mRNA sequence
CCAAAAAAAAACTAAAAAAATTCTCTAATTTCCACCATGGCCGCCGTCTCTGTTCCCAGACCCTTAACCGACGTCGTTTCTTGGTACTGCGCCGTGGGCCTATTGGGCCT
GATTTTGATCGGGTCCATCAGAGAAACCTCCTCCGCCGCCGCCGTCGCCGGTGGCCGGATTCTGAGAGGCAGCTTGCTGACGTGGCGGCCGTGCGATGAGATTTACGTTG
TGGGAGAAGGGGAAACGCTTCACACGATTAGCGATAAGTGCGGCGACCCGTTTATCGTGGAGCGGAACCCGCATATCCACGACCCGGATGATGTCTTTCCGGGTTTGGTC
ATCAAAATTATCTCTTCTTCAAATTCAAATTCCAATCCTACCCAATTTTGA
Protein sequenceShow/hide protein sequence
MAAVSVPRPLTDVVSWYCAVGLLGLILIGSIRETSSAAAVAGGRILRGSLLTWRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIISSSNSNSN
PTQF