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Sed0007349 (gene) of Chayote v1 genome

Gene IDSed0007349
OrganismSechium edule (Chayote v1)
DescriptionRibonuclease III domain-containing protein RNC1
Genome locationLG01:11240621..11241749
RNA-Seq ExpressionSed0007349
SyntenySed0007349
Gene Ontology termsGO:0006396 - RNA processing (biological process)
GO:0010468 - regulation of gene expression (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0090501 - RNA phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003725 - double-stranded RNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsIPR011907 - Ribonuclease III


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036433.1 ribonuclease III domain-containing protein RNC1 [Cucumis melo var. makuwa]6.4e-1562.82Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW
        ++LPKNN QRLLKE AE+KRATSPKKKVP RRFILRPPLDDK+LA+RFLN PQL +    LL  C     +      W
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW

KAB1214880.1 Ribonuclease 3 [Morella rubra]6.4e-1550Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAWK----IDSTFTLTFSIFFSQER
        ++LPKN+ QRLLKE AE+KRATSPKKKVP +RFILRPPLDDKRLA+RFLN PQL +    LL  C     +      W     +++   L + +  S+ER
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAWK----IDSTFTLTFSIFFSQER

Query:  SRDKHKLK
          D +  K
Subjt:  SRDKHKLK

XP_004141878.1 ribonuclease III domain-containing protein RNC1, chloroplastic isoform X1 [Cucumis sativus]2.9e-1564.1Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW
        ++LPKNN QRLLKE AE+KRATSPKKKVP RRFILRPPLDDKRLA+RFLN PQL +    LL  C     +      W
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW

XP_008440359.1 PREDICTED: ribonuclease III domain-containing protein RNC1, chloroplastic [Cucumis melo]6.4e-1562.82Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW
        ++LPKNN QRLLKE AE+KRATSPKKKVP RRFILRPPLDDK+LA+RFLN PQL +    LL  C     +      W
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW

XP_023003680.1 LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like [Cucurbita maxima]6.4e-1561.54Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW
        ++LPKNN QRLLKE AE+KRATSPKKKVP RR+ILRPPLDDK+LA+RFLN PQL +    LL  C     +      W
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW

TrEMBL top hitse value%identityAlignment
A0A0A0KGG7 RNase III domain-containing protein1.4e-1564.1Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW
        ++LPKNN QRLLKE AE+KRATSPKKKVP RRFILRPPLDDKRLA+RFLN PQL +    LL  C     +      W
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW

A0A5A7T0M4 Ribonuclease III domain-containing protein RNC13.1e-1562.82Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW
        ++LPKNN QRLLKE AE+KRATSPKKKVP RRFILRPPLDDK+LA+RFLN PQL +    LL  C     +      W
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW

A0A5D3CNU2 Ribonuclease III domain-containing protein RNC13.1e-1562.82Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW
        ++LPKNN QRLLKE AE+KRATSPKKKVP RRFILRPPLDDK+LA+RFLN PQL +    LL  C     +      W
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW

A0A6A1VWC3 Ribonuclease 33.1e-1550Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAWK----IDSTFTLTFSIFFSQER
        ++LPKN+ QRLLKE AE+KRATSPKKKVP +RFILRPPLDDKRLA+RFLN PQL +    LL  C     +      W     +++   L + +  S+ER
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAWK----IDSTFTLTFSIFFSQER

Query:  SRDKHKLK
          D +  K
Subjt:  SRDKHKLK

A0A6J1KSH3 LOW QUALITY PROTEIN: ribonuclease III domain-containing protein RNC1, chloroplastic-like3.1e-1561.54Show/hide
Query:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW
        ++LPKNN QRLLKE AE+KRATSPKKKVP RR+ILRPPLDDK+LA+RFLN PQL +    LL  C     +      W
Subjt:  KKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAW

SwissProt top hitse value%identityAlignment
A6YSL1 Ribonuclease III domain-containing protein RNC1, chloroplastic2.6e-1158.06Show/hide
Query:  PKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVC
        P N+  RLL+E A++K+A SPKKK P RRFIL+PPLDD+RL +RFL+ PQL +    LL  C
Subjt:  PKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVC

Q8S1Z0 Ribonuclease III domain-containing protein RNC1, chloroplastic1.5e-1159.68Show/hide
Query:  PKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVC
        P N+  RLL+E AE+K+A SPKKK P RRFIL+PPLDD+RL +RFL+ PQL +    LL  C
Subjt:  PKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVC

Q9SZV0 Ribonuclease III domain-containing protein RNC1, chloroplastic8.7e-1547.37Show/hide
Query:  LPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAWKIDSTFTLTFSIFFSQERS
        LP+++ QRLLKE A++K AT PKKKVP +RFILRPPLDDK+LA+RFLN PQL +    LL  C    ++      W  +    +  ++ +S E S
Subjt:  LPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAWKIDSTFTLTFSIFFSQERS

Arabidopsis top hitse value%identityAlignment
AT4G37510.1 Ribonuclease III family protein6.2e-1647.37Show/hide
Query:  LPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAWKIDSTFTLTFSIFFSQERS
        LP+++ QRLLKE A++K AT PKKKVP +RFILRPPLDDK+LA+RFLN PQL +    LL  C    ++      W  +    +  ++ +S E S
Subjt:  LPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAWKIDSTFTLTFSIFFSQERS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGTCGCAGTTGACCCACAACAAAAAATTGCCCAAAAACAACCTTCAAAGACTACTCAAAGAGGCGGCGGAGCAAAAACGAGCCACATCTCCAAAGAAGAAGGTACC
CTCAAGAAGGTTTATTCTTAGACCGCCATTAGATGATAAGAGATTAGCGAAAAGGTTTCTTAATATCCCTCAATTAAAGGTTAGTGATAAATTGTTACTTTGTGTATGCA
AGGTGTTTGATGAAATGACTGAAGGTCTTGGAGCTTGGAAGATAGATTCAACTTTTACATTGACTTTCTCTATATTTTTCTCTCAAGAAAGATCAAGAGACAAACATAAG
TTGAAAGATCAGAGCGGAGTGAAGTTGATGTTCTTGAAGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGTCGCAGTTGACCCACAACAAAAAATTGCCCAAAAACAACCTTCAAAGACTACTCAAAGAGGCGGCGGAGCAAAAACGAGCCACATCTCCAAAGAAGAAGGTACC
CTCAAGAAGGTTTATTCTTAGACCGCCATTAGATGATAAGAGATTAGCGAAAAGGTTTCTTAATATCCCTCAATTAAAGGTTAGTGATAAATTGTTACTTTGTGTATGCA
AGGTGTTTGATGAAATGACTGAAGGTCTTGGAGCTTGGAAGATAGATTCAACTTTTACATTGACTTTCTCTATATTTTTCTCTCAAGAAAGATCAAGAGACAAACATAAG
TTGAAAGATCAGAGCGGAGTGAAGTTGATGTTCTTGAAGATTTGA
Protein sequenceShow/hide protein sequence
MVSQLTHNKKLPKNNLQRLLKEAAEQKRATSPKKKVPSRRFILRPPLDDKRLAKRFLNIPQLKVSDKLLLCVCKVFDEMTEGLGAWKIDSTFTLTFSIFFSQERSRDKHK
LKDQSGVKLMFLKI