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Sed0007395 (gene) of Chayote v1 genome

Gene IDSed0007395
OrganismSechium edule (Chayote v1)
DescriptionINVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages;
Genome locationLG05:37933193..37935082
RNA-Seq ExpressionSed0007395
SyntenySed0007395
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009522 - photosystem I (cellular component)
InterPro domainsIPR008796 - Photosystem I reaction centre subunit N, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7022506.1 hypothetical protein SDJN02_16238, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-3871.53Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-------FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKND
        MSSI Q+ILMAL +T+N+FASSNVQSVQRN+PK     TAT +A         RRGL LSA  AAA           VDSRTELLKRYLKKSEENKEKND
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-------FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKND

Query:  KERLESYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK
        KERLES+YKRNYKDYFEFVEGS+KNK ELSE+EKGIIEWLKRNK
Subjt:  KERLESYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK

XP_004136934.1 uncharacterized protein LOC101214221 [Cucumis sativus]4.1e-3975.71Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA---FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERL
        MSSI QSILMAL VT+NKFASSNVQSVQRN+      ATATAT     GRR L LS +  A++A A+T     VDSRTELLKRYLKKSEENKEKNDKERL
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA---FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERL

Query:  ESYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK
        ESYYKRNYKDYFEFVEGSVKNK+ELSE+EKGI+EWLKR+K
Subjt:  ESYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK

XP_008455049.1 PREDICTED: uncharacterized protein LOC103495319 [Cucumis melo]1.9e-3976.81Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLES
        MSSI QSILMAL VT+NKFASSNVQSVQRN+      ATAT ++  GRR L LS V  A++A AA    ++VDSRTELLKRYLKKSEENKEKNDKERLES
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLES

Query:  YYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK
        YYKRNYKDYFEFVEGSVKNK+ELSE+EKGI+EWLKRNK
Subjt:  YYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK

XP_022927848.1 uncharacterized protein LOC111434615 [Cucurbita moschata]7.8e-3871.53Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-------FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKND
        MSSI Q+ILMAL +T+N+FASSNVQSVQRN+PK     TAT +A         RRGL LSA  AAA           VDSRTELLKRYLKKSEENKEKND
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-------FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKND

Query:  KERLESYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK
        KERLES+YKRNYKDYFEFVEGS+KNK ELSE+EKGIIEWLKRNK
Subjt:  KERLESYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK

XP_038887440.1 uncharacterized protein LOC120077574 [Benincasa hispida]1.2e-4381.88Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATA-TATAFGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLES
        MSSI QSILMAL VT+NKFASSNVQSVQRNQ  +   ATA T +  GRRGL LSAV AA    AATP+E +VDSRTELLKRYLKKSEENKEKNDKERLES
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATA-TATAFGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLES

Query:  YYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK
        YYKRNYKDYFEFVEGSVKNK+ELSE+EKGIIEWLKRNK
Subjt:  YYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK

TrEMBL top hitse value%identityAlignment
A0A067ERX6 Uncharacterized protein6.2e-3365.52Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQ---PKRSSAATATATAF---GRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDK
        MSSI QSILMALTVTVNK+AS NVQ+V R +   PK + A    A AF   GRRGL LS+V AA       PQ ++ DS+T+LL++YLKKSEENK KNDK
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQ---PKRSSAATATATAF---GRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDK

Query:  ERLESYYKRNYKDYFEFVEGSVKNKS--ELSESEKGIIEWLKRNK
        ER++SYYKRNYKDYF+F+EGS+K KS  ELSESEKGI+EWLK NK
Subjt:  ERLESYYKRNYKDYFEFVEGSVKNKS--ELSESEKGIIEWLKRNK

A0A1S3C176 uncharacterized protein LOC1034953199.0e-4076.81Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLES
        MSSI QSILMAL VT+NKFASSNVQSVQRN+      ATAT ++  GRR L LS V  A++A AA    ++VDSRTELLKRYLKKSEENKEKNDKERLES
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLES

Query:  YYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK
        YYKRNYKDYFEFVEGSVKNK+ELSE+EKGI+EWLKRNK
Subjt:  YYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK

A0A6J1D574 uncharacterized protein LOC111017388 isoform X14.9e-3874.45Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATAFGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLESY
        MSSI QSILMAL VTVNKFASSNVQSV RNQ     +A A A+  GRRGL  SAV AA          + VDSRTELLKRYLKKSE+NKEKNDKERL+SY
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATAFGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLESY

Query:  YKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK
        YKRNYKDYFEFVEGSV+NKSELSE+EK IIEWL+RNK
Subjt:  YKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK

A0A6J1EM63 uncharacterized protein LOC1114346153.8e-3871.53Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-------FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKND
        MSSI Q+ILMAL +T+N+FASSNVQSVQRN+PK     TAT +A         RRGL LSA  AAA           VDSRTELLKRYLKKSEENKEKND
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATA-------FGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKND

Query:  KERLESYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK
        KERLES+YKRNYKDYFEFVEGS+KNK ELSE+EKGIIEWLKRNK
Subjt:  KERLESYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK

A0A6J1JNZ7 uncharacterized protein LOC1114862013.8e-3872.66Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKR--SSAATATATAFGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLE
        MSSI Q+ILMAL +T+N+FASSNVQSVQRN+PK   ++A T+ ++   RRGL LSA  AAA           VDSRTELLKRYLKKSEENKEKNDKERLE
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKR--SSAATATATAFGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLE

Query:  SYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK
        S+YKRNYKDYFEFVEGS+KNK ELSE+EKGIIEWLKRNK
Subjt:  SYYKRNYKDYFEFVEGSVKNKSELSESEKGIIEWLKRNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G49975.1 INVOLVED IN: photosynthesis; LOCATED IN: photosystem I, chloroplast, thylakoid membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit N (InterPro:IPR008796); Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4.7e-3363.31Show/hide
Query:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATAFGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLESY
        MSSISQSILMALTVTVNK+ASSNVQ+V+RN  KR S  TA     GRR +  S+    A+A  ++ Q         LL++YLKK+EENK KNDKERL+S+
Subjt:  MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATAFGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLESY

Query:  YKRNYKDYFEFVEGSVKNK--SELSESEKGIIEWLKRNK
        YKRNYKDYFEFVEGS+K K  +ELSESEK I+EWLK NK
Subjt:  YKRNYKDYFEFVEGSVKNK--SELSESEKGIIEWLKRNK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTCCATCAGCCAAAGCATTCTGATGGCCCTCACCGTCACCGTCAACAAATTTGCTTCCTCCAACGTTCAATCCGTTCAGAGAAACCAACCCAAGAGGTCCTCCGC
TGCCACCGCCACCGCCACCGCATTCGGAAGACGAGGTCTCTTCTTGTCGGCCGTTGGTGCCGCCGCCTCCGCCACCGCCGCCACCCCTCAAGAATCATCCGTTGACTCCA
GAACCGAGCTGCTAAAAAGGTACCTAAAGAAGTCCGAAGAAAACAAAGAAAAGAATGACAAGGAGAGATTGGAGAGTTACTACAAGCGAAATTACAAAGATTATTTTGAG
TTTGTTGAAGGATCTGTGAAGAACAAGAGCGAACTTTCCGAATCTGAGAAAGGTATTATTGAGTGGCTTAAACGAAACAAATGA
mRNA sequenceShow/hide mRNA sequence
CAGATTAAAAAAATACATTAGTTAAATAGAGGTATTATTATATGGACCAAGAAAGCCTCATCTGATCTTCAACCTCATCCTCAAACTGAAAAAACTTTCACTCCCATGAG
TTCCATCAGCCAAAGCATTCTGATGGCCCTCACCGTCACCGTCAACAAATTTGCTTCCTCCAACGTTCAATCCGTTCAGAGAAACCAACCCAAGAGGTCCTCCGCTGCCA
CCGCCACCGCCACCGCATTCGGAAGACGAGGTCTCTTCTTGTCGGCCGTTGGTGCCGCCGCCTCCGCCACCGCCGCCACCCCTCAAGAATCATCCGTTGACTCCAGAACC
GAGCTGCTAAAAAGGTACCTAAAGAAGTCCGAAGAAAACAAAGAAAAGAATGACAAGGAGAGATTGGAGAGTTACTACAAGCGAAATTACAAAGATTATTTTGAGTTTGT
TGAAGGATCTGTGAAGAACAAGAGCGAACTTTCCGAATCTGAGAAAGGTATTATTGAGTGGCTTAAACGAAACAAATGAAAAATGAACTCACATTTTTCGTATTTATTTG
GATTCATTCATCTATTAGTTTCAATCTAGCTTGGCTTGTAAGTATAAGATCTTATTTGTAGTTTTGTGATTTTGAAACTAAATTCGTTTAGTGTACATATTTTCCTTTTG
AAAACAAAGGGTAAAGCTACCTCATATGAATTATAGGACTTGCTCAATGTTAACTTTGATGTTTTAATTTGAAAGGTTATCTCTCTAAATTGCTCAATAATGTTTGAGTG
AGTAATAACAACTTCATGGTTTTTGTAAGTTTGTTCTCCTTTTTATATAGTCAATGGCTGGTTTTGGG
Protein sequenceShow/hide protein sequence
MSSISQSILMALTVTVNKFASSNVQSVQRNQPKRSSAATATATAFGRRGLFLSAVGAAASATAATPQESSVDSRTELLKRYLKKSEENKEKNDKERLESYYKRNYKDYFE
FVEGSVKNKSELSESEKGIIEWLKRNK