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Sed0007398 (gene) of Chayote v1 genome

Gene IDSed0007398
OrganismSechium edule (Chayote v1)
DescriptionATP-dependent Clp protease adapter protein clpS
Genome locationLG01:12438010..12440488
RNA-Seq ExpressionSed0007398
SyntenySed0007398
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0030163 - protein catabolic process (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsIPR003769 - Adaptor protein ClpS, core
IPR014719 - Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like
IPR022935 - ATP-dependent Clp protease adaptor protein ClpS


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ98982.1 ATP-dependent Clp protease adapter protein CLPS1 [Cucumis melo var. makuwa]3.8e-4093.18Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_004137466.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucumis sativus]3.8e-4093.18Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_008456997.1 PREDICTED: ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucumis melo]3.8e-4093.18Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_022136971.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 [Momordica charantia]2.7e-4196.59Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKTAPPYRV+LHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

XP_022136972.1 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X2 [Momordica charantia]2.7e-4196.59Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKTAPPYRV+LHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

TrEMBL top hitse value%identityAlignment
A0A0A0LSY6 ClpS domain-containing protein1.9e-4093.18Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A1S3C561 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like1.9e-4093.18Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A5D3BGU1 ATP-dependent Clp protease adapter protein CLPS11.9e-4093.18Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKT+PPYRV+LHNDN+NKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGM+VVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A6J1C511 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X11.3e-4196.59Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKTAPPYRV+LHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

A0A6J1C6X4 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X21.3e-4196.59Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKSRKTAPPYRV+LHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

SwissProt top hitse value%identityAlignment
A0A2K3CNL6 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic3.2e-2156.82Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        + +S+K  P Y+V+LHNDNYNKREYVV+VL+KV+  +TVD+AV  MQEAH  G+++V+ C Q +AE +C  LR NGL S+IEP   GC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

Q31QE7 ATP-dependent Clp protease adapter protein ClpS2.5e-1852.27Show/hide
Query:  LQSHQIRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEP
        +Q  +    RK AP YRV+LHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL SSIEP
Subjt:  LQSHQIRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEP

Q3AUR5 ATP-dependent Clp protease adapter protein ClpS3.2e-1345.57Show/hide
Query:  RKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEP
        RK +P Y+V+LHND  N  EYV+  L +V+P ++  +A+ +M EAH  G+ +VI+C    AE +C  L+  GL SSIEP
Subjt:  RKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEP

Q5N3U1 ATP-dependent Clp protease adapter protein ClpS1.2e-1550Show/hide
Query:  LQSHQIRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGL
        +Q  +    RK AP YRV+LHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    AE +C QL+ +GL
Subjt:  LQSHQIRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGL

Q9SX29 ATP-dependent Clp protease adapter protein CLPS1, chloroplastic8.3e-3882.95Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQEAH NG++VVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

Arabidopsis top hitse value%identityAlignment
AT1G68660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein5.9e-3982.95Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKS+K APPYRV+LHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQEAH NG++VVI+CAQ DAE HCMQLRGNGLLSS+EP   GC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC

AT1G68660.2 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein2.6e-1853.41Show/hide
Query:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC
        +RKS+K APPYRV+LHNDN+NKREYVVQVLMK                               DAE HCMQLRGNGLLSS+EP   GC
Subjt:  IRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCTGCAATTTGTTCGACCATTTCTTTCGCCCAATCATTTCTTCAATCCCACCAAATCAGGAAATCAAGGAAAACTGCACCACCTTACCGAGTGATGCTGCATAA
TGATAATTACAATAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTTATCCCTGGAATGACCGTTGATAATGCAGTCAACATAATGCAGGAGGCACATTATAATGGGA
TGTCAGTGGTAATTATCTGTGCCCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGTAATGGTCTTCTAAGTTCAATTGAGCCTGCAAGTGATGGTTGTTGA
mRNA sequenceShow/hide mRNA sequence
GCGCGAGCGCGCGCACAGAGAGAGAGAGGGGCCATGGAAGCTGCAATTTGTTCGACCATTTCTTTCGCCCAATCATTTCTTCAATCCCACCAAATCAGGAAATCAAGGAA
AACTGCACCACCTTACCGAGTGATGCTGCATAATGATAATTACAATAAGCGGGAATATGTTGTGCAAGTTCTGATGAAGGTTATCCCTGGAATGACCGTTGATAATGCAG
TCAACATAATGCAGGAGGCACATTATAATGGGATGTCAGTGGTAATTATCTGTGCCCAAGTGGATGCAGAAGATCACTGCATGCAGCTGAGAGGTAATGGTCTTCTAAGT
TCAATTGAGCCTGCAAGTGATGGTTGTTGAATAGGAAAAATATACTATGCCATGTACTCTTTTGCCCCTTAGTTATCAGCCATATTAAAAGTGCATGTTCTCCACTGCTT
ATGTATTGTAAGTTGCATCTATGTACATAAATAGAGATACTTCTTAAATAAAGAAACTTCATTTTAC
Protein sequenceShow/hide protein sequence
MEAAICSTISFAQSFLQSHQIRKSRKTAPPYRVMLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHYNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC