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Sed0007412 (gene) of Chayote v1 genome

Gene IDSed0007412
OrganismSechium edule (Chayote v1)
DescriptionF-box domain-containing protein
Genome locationLG13:17489226..17491221
RNA-Seq ExpressionSed0007412
SyntenySed0007412
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044260 - F-box protein SKIP8-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044925.1 F-box protein SKIP8 [Cucumis melo var. makuwa]3.9e-2777.11Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDDNA KALYHK      D VTP+NGWK+Y AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

XP_004149013.1 F-box protein SKIP8 [Cucumis sativus]3.9e-2777.11Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDDNA KALYHK      D VTP+NGWK+Y AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

XP_008451931.1 PREDICTED: F-box protein SKIP8 [Cucumis melo]3.9e-2777.11Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDDNA KALYHK      D VTP+NGWK+Y AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

XP_022931549.1 F-box protein SKIP8-like [Cucurbita moschata]5.1e-2777.11Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDD+A KALYHK      D VTP+NGWKAY AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

XP_038880969.1 F-box protein SKIP8-like [Benincasa hispida]1.7e-2778.31Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDDNA KALYHK      D VTP+NGWKAY AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

TrEMBL top hitse value%identityAlignment
A0A0A0KX34 F-box domain-containing protein1.9e-2777.11Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDDNA KALYHK      D VTP+NGWK+Y AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

A0A1S3BTF9 F-box protein SKIP81.9e-2777.11Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDDNA KALYHK      D VTP+NGWK+Y AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

A0A5A7TU63 F-box protein SKIP81.9e-2777.11Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDDNA KALYHK      D VTP+NGWK+Y AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

A0A6J1EUJ3 F-box protein SKIP8-like2.4e-2777.11Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDD+A KALYHK      D VTP+NGWKAY AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

A0A6J1JB95 F-box protein SKIP82.4e-2777.11Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MTNSLMRKAANDD+A KALYHK      D VTP+NGWKAY AAT+TIMNIN+QFYNIIR+RSLQ MS FWLNA  +KCIHASG
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

SwissProt top hitse value%identityAlignment
Q93YV9 F-box protein SKIP88.4e-2550.42Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASGVKEQPINLF--------
        MTNSLMRKAANDDNA KALYHK      D +TPVNGWK Y A T+ I+++N++F+ IIR+R+LQ M+  WLN+  +KCIHASG      N          
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASGVKEQPINLF--------

Query:  -----YTHLVHVVRSRLLT
             +   VH VR+R+LT
Subjt:  -----YTHLVHVVRSRLLT

Q9T0B0 Probable F-box protein At4g239604.6e-1546.99Show/hide
Query:  MTNSLMRKAANDDNACKALYHKD------NVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MT+S MRK ANDD   +ALY ++        TPVNGWKA+ A TK +M +N +F++I+  RSL  M+  WLN+  +KC + SG
Subjt:  MTNSLMRKAANDDNACKALYHKD------NVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG

Arabidopsis top hitse value%identityAlignment
AT4G10925.1 Nuclear transport factor 2 (NTF2) family protein6.0e-2650.42Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASGVKEQPINLF--------
        MTNSLMRKAANDDNA KALYHK      D +TPVNGWK Y A T+ I+++N++F+ IIR+R+LQ M+  WLN+  +KCIHASG      N          
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASGVKEQPINLF--------

Query:  -----YTHLVHVVRSRLLT
             +   VH VR+R+LT
Subjt:  -----YTHLVHVVRSRLLT

AT4G10925.2 Nuclear transport factor 2 (NTF2) family protein6.0e-2650.42Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASGVKEQPINLF--------
        MTNSLMRKAANDDNA KALYHK      D +TPVNGWK Y A T+ I+++N++F+ IIR+R+LQ M+  WLN+  +KCIHASG      N          
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASGVKEQPINLF--------

Query:  -----YTHLVHVVRSRLLT
             +   VH VR+R+LT
Subjt:  -----YTHLVHVVRSRLLT

AT4G10925.3 Nuclear transport factor 2 (NTF2) family protein6.0e-2650.42Show/hide
Query:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASGVKEQPINLF--------
        MTNSLMRKAANDDNA KALYHK      D +TPVNGWK Y A T+ I+++N++F+ IIR+R+LQ M+  WLN+  +KCIHASG      N          
Subjt:  MTNSLMRKAANDDNACKALYHK------DNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASGVKEQPINLF--------

Query:  -----YTHLVHVVRSRLLT
             +   VH VR+R+LT
Subjt:  -----YTHLVHVVRSRLLT

AT4G23960.1 F-box family protein3.3e-1646.99Show/hide
Query:  MTNSLMRKAANDDNACKALYHKD------NVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG
        MT+S MRK ANDD   +ALY ++        TPVNGWKA+ A TK +M +N +F++I+  RSL  M+  WLN+  +KC + SG
Subjt:  MTNSLMRKAANDDNACKALYHKD------NVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAATTCGTTGATGCGCAAAGCTGCAAATGATGATAATGCCTGCAAAGCGCTTTATCATAAGGATAATGTAACTCCAGTTAACGGGTGGAAGGCTTACTCTGCTGC
AACAAAAACAATTATGAACATCAATTCCCAATTCTATAACATCATCAGAGAGAGGTCTCTTCAAGGGATGAGTGATTTTTGGTTAAATGCTGGTTGTATGAAGTGTATTC
ACGCCTCGGGGGTAAAAGAACAACCAATAAACTTGTTTTATACGCATTTGGTCCATGTTGTGCGGAGCCGACTTCTCACCATAGCCTTACCCTTAATGCATGTTAATCAC
AGTCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAATTCGTTGATGCGCAAAGCTGCAAATGATGATAATGCCTGCAAAGCGCTTTATCATAAGGATAATGTAACTCCAGTTAACGGGTGGAAGGCTTACTCTGCTGC
AACAAAAACAATTATGAACATCAATTCCCAATTCTATAACATCATCAGAGAGAGGTCTCTTCAAGGGATGAGTGATTTTTGGTTAAATGCTGGTTGTATGAAGTGTATTC
ACGCCTCGGGGGTAAAAGAACAACCAATAAACTTGTTTTATACGCATTTGGTCCATGTTGTGCGGAGCCGACTTCTCACCATAGCCTTACCCTTAATGCATGTTAATCAC
AGTCAATAA
Protein sequenceShow/hide protein sequence
MTNSLMRKAANDDNACKALYHKDNVTPVNGWKAYSAATKTIMNINSQFYNIIRERSLQGMSDFWLNAGCMKCIHASGVKEQPINLFYTHLVHVVRSRLLTIALPLMHVNH
SQ