; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0007503 (gene) of Chayote v1 genome

Gene IDSed0007503
OrganismSechium edule (Chayote v1)
DescriptionRRM domain-containing protein
Genome locationLG11:823115..828772
RNA-Seq ExpressionSed0007503
SyntenySed0007503
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143227.1 U1 small nuclear ribonucleoprotein 70 kDa [Momordica charantia]2.6e-14683.43Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA+DAI DMDGRTI+GRVV+VNGV +RGG RFGR+  R+N E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHNLNHDQDREKDHDADWIEGRSV
        RDA WE+DRDRG DYDHDRY  R RNNDWSR+RDRSRE +LDKER YEH QDRDLPK+KLLDRDPELEK SK NE   +LN DQD EKDHDADW  GR++
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHNLNHDQDREKDHDADWIEGRSV

Query:  DNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKRSS
        DNTDDYDKSLDN+RD  SRRD+GL I  R  R+VSSDSSDDYIHELKEQLE+STER EELRKEIS+IEERTGEKGK V+ELQKKAKKLEDALISAKKR+S
Subjt:  DNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKRSS

Query:  LRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
         RQMQLTKLHKS LLVKDYSERLK+SEQELQALVESTAIESDVG
Subjt:  LRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

XP_022946346.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita moschata]6.5e-15084.68Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSAIDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR
        RD +WERDRDRG DY+HDRYR+R RNNDWSR+RDRSRE +LDKERVYEHSQDRDLPK+ LLDR+PELEK+ K NE+E +  L+H QD EKDHDADW  G 
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR

Query:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR
         +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDSSDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Subjt:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR

Query:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
        SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Subjt:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

XP_022999196.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita maxima]1.9e-14984.39Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSAIDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR
        RD +WERDRDRG DY+HDRYR+R RNNDWSR+RDRSRE +LDKERVYEHSQDRDLPK+ LLDR+PELEK+ K NE+E +  L+H QD EKDHD DW  G 
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR

Query:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR
         +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDSSDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Subjt:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR

Query:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
        SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Subjt:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

XP_023547216.1 U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]1.9e-14984.39Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSAIDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR
        RD +WERDRDRG DY+HDRYR+R RNNDWSR+RDRSRE +LDKER YEHSQDRDLPK+ LLDR+PELEK+ K NE+E +  L+H QD EKDHDADW  G 
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR

Query:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR
         +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDSSDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Subjt:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR

Query:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
        SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Subjt:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

XP_038889756.1 serine/threonine-protein kinase prpf4B [Benincasa hispida]8.0e-14883.82Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSAIDAI DMDGR+IEGRVV+VNGV +R G RFGR+ NRF+ E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR
        RD SWERDRDRG DYDHDRYR R RNNDWSRDRDRSRE +LDKER YEHSQD D PK+KLLDRDPELEK SK NEK H+  LNHDQD EK+H ADWI G 
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR

Query:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR
         +DN DDY+KSLDN+R+ LSRRDNGL    R  RD+SSDSSDDYIHELKEQLE+STER+EELRKE+SQIEER+GEK K VIELQKKAKKLEDALISAKKR
Subjt:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR

Query:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
        SS RQMQLTKLHKS LLVKDYSERLKTSEQELQALVESTAIESDVG
Subjt:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

TrEMBL top hitse value%identityAlignment
A0A5A7V7D5 Zinc finger CCCH domain-containing protein 256.4e-14381.21Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSAIDAI DMDGRTIEGRVV+VNGV +R G RFG++ NRF+ E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR
        RD +WERDRDRG DYDHDRYR R RNNDWSRD DRSRE +LDKER Y+HSQDRDLPK++ LDRDPELEK SK NEK H+  LNHDQD EKDH AD   G 
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR

Query:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR
         +D TDDYDKSLDN+RD + RRDN L I  R  RD+SSDSSDDYIHELKEQLE+STER+EELRKE+SQIEER+GEK K V+ELQKKAKKLEDALISAKKR
Subjt:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR

Query:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
        SS RQ QL KLHKS LLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

A0A5D3CHM1 Zinc finger CCCH domain-containing protein 255.8e-14481.79Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSAIDAI DMDGRTIEGRVV+VNGV +R G RFG++ NRF+ E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR
        RD +WERDRDRG DYDHDRYR R RNNDWSRD DRSRE +LDKER Y+HSQDRDLPK++ LDRDPELEK SK NEK H+  LNHDQD EKDH AD   G 
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR

Query:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR
         +D TDDYDKSLDN+RD + RRDNGL I  R  RD+SSDSSDDYIHELKEQLE+STER+EELRKE+SQIEER+GEK K V+ELQKKAKKLEDALISAKKR
Subjt:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR

Query:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
        SS RQ QL KLHKS LLVKDYS+RLKTSEQELQALVESTAIESDVG
Subjt:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

A0A6J1CQ67 U1 small nuclear ribonucleoprotein 70 kDa1.2e-14683.43Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSA+DAI DMDGRTI+GRVV+VNGV +RGG RFGR+  R+N E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHNLNHDQDREKDHDADWIEGRSV
        RDA WE+DRDRG DYDHDRY  R RNNDWSR+RDRSRE +LDKER YEH QDRDLPK+KLLDRDPELEK SK NE   +LN DQD EKDHDADW  GR++
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHNLNHDQDREKDHDADWIEGRSV

Query:  DNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKRSS
        DNTDDYDKSLDN+RD  SRRD+GL I  R  R+VSSDSSDDYIHELKEQLE+STER EELRKEIS+IEERTGEKGK V+ELQKKAKKLEDALISAKKR+S
Subjt:  DNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKRSS

Query:  LRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
         RQMQLTKLHKS LLVKDYSERLK+SEQELQALVESTAIESDVG
Subjt:  LRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

A0A6J1G3E0 U1 small nuclear ribonucleoprotein 70 kDa3.2e-15084.68Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSAIDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR
        RD +WERDRDRG DY+HDRYR+R RNNDWSR+RDRSRE +LDKERVYEHSQDRDLPK+ LLDR+PELEK+ K NE+E +  L+H QD EKDHDADW  G 
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR

Query:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR
         +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDSSDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Subjt:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR

Query:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
        SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Subjt:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

A0A6J1KCE4 U1 small nuclear ribonucleoprotein 70 kDa9.2e-15084.39Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MT+DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKI+NDRSTRGKCYGFVTFTNPRSAIDAI DMDGRTIEGRVV+VNGVNTRGG RFGR+SNRF+ E
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR
        RD +WERDRDRG DY+HDRYR+R RNNDWSR+RDRSRE +LDKERVYEHSQDRDLPK+ LLDR+PELEK+ K NE+E +  L+H QD EKDHD DW  G 
Subjt:  RDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHN--LNHDQDREKDHDADWIEGR

Query:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR
         +DNTDDYDKSL ++RD LSRRDNGLAI  R  R++SSDSSDDYIHELKEQLE+STER EELRKEISQIEERTGEKGK V+ELQKKAKKLEDALISAKKR
Subjt:  SVDNTDDYDKSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKR

Query:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
        SS RQMQLTKLHKS LLVKDYSERLK SEQELQALVESTAIESDVG
Subjt:  SSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

SwissProt top hitse value%identityAlignment
O22703 Glycine-rich RNA-binding protein RZ1B1.5e-1135.75Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGG---------------RR
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI  M GR +  +V+ VN    + G               R 
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGG---------------RR

Query:  FGRDSNRFNGERDASWERDRDRGGDYDHDRYR----QRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRD
         G +   F   R   W RD    GD D +R+R     RSR  D    RDR  +R+L++ER  E   DR +   +  DRD
Subjt:  FGRDSNRFNGERDASWERDRDRGGDYDHDRYR----QRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRD

Q18409 Probable splicing factor, arginine/serine-rich 61.7e-1238.24Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEG---RVVKVNGVNTRGGRR---------FGRD
        D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA+  +DG  I G   RV    G    GG R          GRD
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEG---RVVKVNGVNTRGGRR---------FGRD

Query:  SNRFNGERDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDR
         + + G+R  S  R RDRG D   DR R RSR+    R R+RSRERE  + R     Q+RD    K   R
Subjt:  SNRFNGERDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDR

Q28IQ9 Cold-inducible RNA-binding protein1.0e-1238.41Show/hide
Query:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDR-STRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGV-----NTRGGRRFGRDSNR--
        D+  ++VGGL ++ TE+SL ++F  YG V  V +V DR S R + +GFVTF NP  A DA+  M+G++++GR ++V+       + RGG R G    R  
Subjt:  DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDR-STRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGV-----NTRGGRRFGRDSNR--

Query:  FNGERDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRD
        F G R      DR  GG     R+  RS     S  RD
Subjt:  FNGERDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRD

Q66II8 U1 small nuclear ribonucleoprotein 70 kDa1.0e-1231.47Show/hide
Query:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIV-NDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVN---------------GVNTRGG
        D   +++V  + YD TE  LRR F++YG +  + +V N RS + + Y F+ + + R    A    DG+ I+GR V V+               G    G 
Subjt:  DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIV-NDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVN---------------GVNTRGG

Query:  RRFGRDSN-RFNGERDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSR--------------ERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSK
        RR G D N R +G  D S   +RDR  + + DR R+RSR  D  R+R RSR              ER+  +ER  +  +D+D  K+K  D+D + ++  +
Subjt:  RRFGRDSN-RFNGERDASWERDRDRGGDYDHDRYRQRSRNNDWSRDRDRSR--------------ERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSK

Query:  GNEKEHNLNHDQDREKDHDADWIEGRSVDNTD
           +E     D+DREK  D   +EG   ++ D
Subjt:  GNEKEHNLNHDQDREKDHDADWIEGRSVDNTD

Q9DED4 Cold-inducible RNA-binding protein B5.0e-1236.51Show/hide
Query:  MDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGER
        M D+  +++GGL +D  E+SL ++F  YG +  V +V DR T R + +GFVTF NP  A DA+  M+G+ ++GR ++V+      G R G      +G R
Subjt:  MDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGER

Query:  DASWERDRDRGG---DYDHDRYRQRS
           +   R RGG    Y   R+  RS
Subjt:  DASWERDRDRGG---DYDHDRYRQRS

Arabidopsis top hitse value%identityAlignment
AT1G60650.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.0e-1235.75Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGG---------------RR
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI  M GR +  +V+ VN    + G               R 
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGG---------------RR

Query:  FGRDSNRFNGERDASWERDRDRGGDYDHDRYR----QRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRD
         G +   F   R   W RD    GD D +R+R     RSR  D    RDR  +R+L++ER  E   DR +   +  DRD
Subjt:  FGRDSNRFNGERDASWERDRDRGGDYDHDRYR----QRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRD

AT1G60650.2 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain1.0e-1235.75Show/hide
Query:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGG---------------RR
        +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI  M GR +  +V+ VN    + G               R 
Subjt:  DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGG---------------RR

Query:  FGRDSNRFNGERDASWERDRDRGGDYDHDRYR----QRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRD
         G +   F   R   W RD    GD D +R+R     RSR  D    RDR  +R+L++ER  E   DR +   +  DRD
Subjt:  FGRDSNRFNGERDASWERDRDRGGDYDHDRYR----QRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRD

AT5G19960.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.8e-5644.7Show/hide
Query:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE
        MTMDD +S+YVGGLPYD TE+++RR+F +YG+V+ VKIVNDRS RGKCYGFVTF+N RSA DAI DMDG++I GR V+VN V TRGGR    +      +
Subjt:  MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGE

Query:  RDASWERDRDR--GGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKE-KLLDRDPELEKLSKGNEKEHNLNHDQDREKDHDADWIE-
            W+R  DR   G+Y+ DRY  RSR  D S+DR R   R ++KER YEHS D +   +  ++DR+   E++  G+E +             D  +++ 
Subjt:  RDASWERDRDR--GGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKE-KLLDRDPELEKLSKGNEKEHNLNHDQDREKDHDADWIE-

Query:  GRSVDNTDDYD-KSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISA
        GR ++ T  ++ +S + +R+  +  D G        RD  S+SS D  H++KE LE   +  E LR E+  +EER   K     ELQKK+K+LED LI+ 
Subjt:  GRSVDNTDDYD-KSLDNERDPLSRRDNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISA

Query:  KKRSSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG
        KK  S R+ +L KLHKS+  V++ ++ LK  EQELQ LV S A E   G
Subjt:  KKRSSLRQMQLTKLHKSHLLVKDYSERLKTSEQELQALVESTAIESDVG

AT5G61030.1 glycine-rich RNA-binding protein 36.5e-1543Show/hide
Query:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTR------GGRRFGRDSNRFNG
        S +++GG+ Y   EDSLR  F  YG VV  +++ DR T R + +GFVTFT+  +A  AI  +DGR + GRVVKVN  N R      GG  +G     + G
Subjt:  SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRST-RGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTR------GGRRFGRDSNRFNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGATGGACGATGACAGCTCGATTTACGTCGGAGGACTTCCGTACGACGCCACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAA
GATTGTTAATGATCGTAGTACTAGAGGAAAGTGTTATGGTTTCGTTACCTTTACAAACCCTCGATCTGCAATTGATGCCATTAATGATATGGATGGAAGGACTATAGAAG
GGCGAGTTGTCAAAGTTAATGGAGTGAATACCAGAGGTGGGAGAAGGTTTGGTAGAGACAGTAATCGGTTCAATGGAGAGAGGGATGCAAGTTGGGAAAGGGATAGAGAT
CGAGGGGGGGATTATGATCATGACAGATATCGTCAAAGAAGCAGAAATAATGACTGGTCTAGAGATCGTGATCGGTCTCGAGAACGTGAATTGGACAAGGAAAGAGTATA
TGAGCATTCACAAGATCGTGATCTACCCAAGGAAAAATTATTGGATAGGGATCCAGAGTTGGAAAAATTGTCAAAGGGTAATGAGAAGGAACACAACTTGAACCATGATC
AGGATCGGGAAAAGGATCATGATGCAGATTGGATCGAAGGCCGAAGCGTTGATAACACTGATGATTATGATAAAAGCCTTGACAATGAAAGAGATCCACTGTCAAGGAGA
GATAACGGCCTTGCAATTGGAGATCGACCTGTTCGGGATGTTTCATCAGATTCTAGTGATGATTATATTCATGAATTAAAGGAACAACTGGAGATGTCAACTGAAAGAAT
TGAAGAACTTAGAAAAGAGATTTCTCAAATTGAGGAGAGGACAGGAGAGAAAGGAAAACACGTGATCGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCA
GCGCAAAGAAGCGCTCTTCATTACGTCAGATGCAGCTGACCAAGCTCCATAAAAGCCATCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGAACTT
CAGGCTTTGGTTGAATCAACTGCAATAGAGAGTGATGTTGGCTGA
mRNA sequenceShow/hide mRNA sequence
GTGTTTACTTTTTAGGGCATATTCCATTCCTTGCCTTCAGTCTCGATGTGTCGTTAGGTTTTGGCGTTACTTCCGACATGTCGATTTACGCTTCCTATAAATCAGCACTA
TCAATGGAAAAGAGAGTTCAATAGTGTTCTTGTGGAGTTTCTTCGTTCTCCTCCGAGCTCGGAGTTTCGCCGGAGATTATGACGATGGACGATGACAGCTCGATTTACGT
CGGAGGACTTCCGTACGACGCCACCGAGGATAGCTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTGTTAATGATCGTAGTACTAGAGGAAAGT
GTTATGGTTTCGTTACCTTTACAAACCCTCGATCTGCAATTGATGCCATTAATGATATGGATGGAAGGACTATAGAAGGGCGAGTTGTCAAAGTTAATGGAGTGAATACC
AGAGGTGGGAGAAGGTTTGGTAGAGACAGTAATCGGTTCAATGGAGAGAGGGATGCAAGTTGGGAAAGGGATAGAGATCGAGGGGGGGATTATGATCATGACAGATATCG
TCAAAGAAGCAGAAATAATGACTGGTCTAGAGATCGTGATCGGTCTCGAGAACGTGAATTGGACAAGGAAAGAGTATATGAGCATTCACAAGATCGTGATCTACCCAAGG
AAAAATTATTGGATAGGGATCCAGAGTTGGAAAAATTGTCAAAGGGTAATGAGAAGGAACACAACTTGAACCATGATCAGGATCGGGAAAAGGATCATGATGCAGATTGG
ATCGAAGGCCGAAGCGTTGATAACACTGATGATTATGATAAAAGCCTTGACAATGAAAGAGATCCACTGTCAAGGAGAGATAACGGCCTTGCAATTGGAGATCGACCTGT
TCGGGATGTTTCATCAGATTCTAGTGATGATTATATTCATGAATTAAAGGAACAACTGGAGATGTCAACTGAAAGAATTGAAGAACTTAGAAAAGAGATTTCTCAAATTG
AGGAGAGGACAGGAGAGAAAGGAAAACACGTGATCGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGCGCAAAGAAGCGCTCTTCATTACGTCAGATG
CAGCTGACCAAGCTCCATAAAAGCCATCTGCTAGTGAAGGATTATTCTGAGAGACTTAAAACCAGTGAACAAGAACTTCAGGCTTTGGTTGAATCAACTGCAATAGAGAG
TGATGTTGGCTGATGATCTATGAAGTTCCAGCCAGTTGCAATTCATGTCATGAGCTGAAAAGGCTGCATCCTGATGTTGTGTTGGCGCGCAACTCTTCCCTGTGGTCATA
TGGTATATTCATGGTCTTCTGTTGATACTGATGGCAAGTTGTGAAGTAGAGATCATTTGTTACCATTTGCTTCATGGTACGTCCACAATCAACTTAAGCACATGATTTTA
CTCACTGTTGTCTAGTTAGGTATTTAGAGATTTACTGGAAATCAGTTACTTTTCCTACTTGCCTCAAGTTCCTTTTTCTTTTTTTACTGCCTAACCCTACTATTTAAGTA
GTTCATTATCATGACTTAAACTCATTCCCTCGTGCGTTTTTTAAATCATTAGGCCAATCCATGATAATTATATTATAATTCTTTTCTAAGAATATTGACTGGTC
Protein sequenceShow/hide protein sequence
MTMDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIVNDRSTRGKCYGFVTFTNPRSAIDAINDMDGRTIEGRVVKVNGVNTRGGRRFGRDSNRFNGERDASWERDRD
RGGDYDHDRYRQRSRNNDWSRDRDRSRERELDKERVYEHSQDRDLPKEKLLDRDPELEKLSKGNEKEHNLNHDQDREKDHDADWIEGRSVDNTDDYDKSLDNERDPLSRR
DNGLAIGDRPVRDVSSDSSDDYIHELKEQLEMSTERIEELRKEISQIEERTGEKGKHVIELQKKAKKLEDALISAKKRSSLRQMQLTKLHKSHLLVKDYSERLKTSEQEL
QALVESTAIESDVG