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Sed0007533 (gene) of Chayote v1 genome

Gene IDSed0007533
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG12:5526155..5533957
RNA-Seq ExpressionSed0007533
SyntenySed0007533
Gene Ontology termsNA
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008438722.1 PREDICTED: probable E3 ubiquitin-protein ligase LUL4 [Cucumis melo]3.6e-3546.12Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVHID------------HHLVSFV---------------------------------------------------------
        PPPL  +EHR AKKVRNDVNVH D            HHLVSFV                                                         
Subjt:  PPPLLFLEHRPAKKVRNDVNVHID------------HHLVSFV---------------------------------------------------------

Query:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN
         FDLDDLSKPSP +D FPLVISAET SPSQ +DE++              AVLEKKNG PFQV+VIR+LLWID +             SAE F+DNDTG 
Subjt:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN

Query:  ECVICMTEPKDTAVLPCRH
        ECVICMTEPKDTAVLPCRH
Subjt:  ECVICMTEPKDTAVLPCRH

XP_011650992.1 probable E3 ubiquitin-protein ligase LUL4 [Cucumis sativus]7.2e-3647.03Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV---------------------------------------------------------
        PPPL  +EHR AKKVRNDVNVH             DHHLVSFV                                                         
Subjt:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV---------------------------------------------------------

Query:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN
         FDLDDLSKPSP +D FPLVISAET SPSQ +DE+I              AVLEKKNG PFQVRVIR+LLWID +             SAE F+DNDTG 
Subjt:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN

Query:  ECVICMTEPKDTAVLPCRH
        ECVICMTEPKDTAVLPCRH
Subjt:  ECVICMTEPKDTAVLPCRH

XP_022138033.1 probable E3 ubiquitin-protein ligase LUL4 [Momordica charantia]8.5e-3747.95Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFVFD-------------------------------------------------------
        PPPL F+EHR AKKVRNDVNVH             D HLVSFVFD                                                       
Subjt:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFVFD-------------------------------------------------------

Query:  ---LDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN
           LDDLSKPSP +DIFPLVISAET SPSQ NDE+I              AVLEKKNG PFQVRVIR+LLWID +             SAE F+DNDTG 
Subjt:  ---LDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN

Query:  ECVICMTEPKDTAVLPCRH
        ECVICMTEPKDTAVLPCRH
Subjt:  ECVICMTEPKDTAVLPCRH

XP_023529062.1 probable E3 ubiquitin-protein ligase LUL4 [Cucurbita pepo subsp. pepo]9.5e-3646.46Show/hide
Query:  MGRP----PPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV--------------------------------------------------
        MG P    PPL  +EHR  KKVRNDVNVH             DHHLVSFV                                                  
Subjt:  MGRP----PPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV--------------------------------------------------

Query:  --------FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECF
                FD DDLSKPSP +DIFPLVISAETRSPSQ +DE+I              AVLEKKNGSPFQVRVIR+LLWID +             SAE F
Subjt:  --------FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECF

Query:  NDNDTGNECVICMTEPKDTAVLPCRH
        +DND+G ECVICMTEPKDTAVLPCRH
Subjt:  NDNDTGNECVICMTEPKDTAVLPCRH

XP_038875142.1 probable E3 ubiquitin-protein ligase LUL4 [Benincasa hispida]3.2e-3647.49Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFVFD-------------------------------------------------------
        PPPL F+EHR AKKVRNDVNVH             DHHLVSFVFD                                                       
Subjt:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFVFD-------------------------------------------------------

Query:  ---LDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN
           LDDLSKPS  +DIFPLVISAET SPSQ +DE+I              AVLEKKNG PFQVRVIR+LLWID +             SAE F+DNDTG 
Subjt:  ---LDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN

Query:  ECVICMTEPKDTAVLPCRH
        ECVICMTEPKDTAVLPCRH
Subjt:  ECVICMTEPKDTAVLPCRH

TrEMBL top hitse value%identityAlignment
A0A0A0LAF7 RING-type domain-containing protein3.5e-3647.03Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV---------------------------------------------------------
        PPPL  +EHR AKKVRNDVNVH             DHHLVSFV                                                         
Subjt:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV---------------------------------------------------------

Query:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN
         FDLDDLSKPSP +D FPLVISAET SPSQ +DE+I              AVLEKKNG PFQVRVIR+LLWID +             SAE F+DNDTG 
Subjt:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN

Query:  ECVICMTEPKDTAVLPCRH
        ECVICMTEPKDTAVLPCRH
Subjt:  ECVICMTEPKDTAVLPCRH

A0A1S3AXS8 probable E3 ubiquitin-protein ligase LUL41.7e-3546.12Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVHID------------HHLVSFV---------------------------------------------------------
        PPPL  +EHR AKKVRNDVNVH D            HHLVSFV                                                         
Subjt:  PPPLLFLEHRPAKKVRNDVNVHID------------HHLVSFV---------------------------------------------------------

Query:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN
         FDLDDLSKPSP +D FPLVISAET SPSQ +DE++              AVLEKKNG PFQV+VIR+LLWID +             SAE F+DNDTG 
Subjt:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN

Query:  ECVICMTEPKDTAVLPCRH
        ECVICMTEPKDTAVLPCRH
Subjt:  ECVICMTEPKDTAVLPCRH

A0A6J1CBY6 probable E3 ubiquitin-protein ligase LUL44.1e-3747.95Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFVFD-------------------------------------------------------
        PPPL F+EHR AKKVRNDVNVH             D HLVSFVFD                                                       
Subjt:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFVFD-------------------------------------------------------

Query:  ---LDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN
           LDDLSKPSP +DIFPLVISAET SPSQ NDE+I              AVLEKKNG PFQVRVIR+LLWID +             SAE F+DNDTG 
Subjt:  ---LDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN

Query:  ECVICMTEPKDTAVLPCRH
        ECVICMTEPKDTAVLPCRH
Subjt:  ECVICMTEPKDTAVLPCRH

A0A6J1GW09 probable E3 ubiquitin-protein ligase LUL45.1e-3546.33Show/hide
Query:  PPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV----------------------------------------------------------
        PPL  +EHR  KKVRNDVNVH             DHHLVSFV                                                          
Subjt:  PPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV----------------------------------------------------------

Query:  FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGNE
        FD DDLSKPSP +DIFPLVISAET SPSQ +DE+I              AVLEKKNGSPFQVRVIR+LLWID +             SAE F+DND+G E
Subjt:  FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGNE

Query:  CVICMTEPKDTAVLPCRH
        CVICMTEPKDTAVLPCRH
Subjt:  CVICMTEPKDTAVLPCRH

A0A6J1INW8 probable E3 ubiquitin-protein ligase LUL45.1e-3546.12Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV---------------------------------------------------------
        PPPL  +EHR AKKVRNDVNVH             DHHLVSFV                                                         
Subjt:  PPPLLFLEHRPAKKVRNDVNVH------------IDHHLVSFV---------------------------------------------------------

Query:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN
         FD DDLSKPSP +DIFPLVISAET SPS  +DE+I              AVLEKKNGSP QVRVIR+LLWID +             SAE F+DND+G 
Subjt:  -FDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQI--------------AVLEKKNGSPFQVRVIRRLLWIDNL-------------SAECFNDNDTGN

Query:  ECVICMTEPKDTAVLPCRH
        ECVICMTEPKDTAVLPCRH
Subjt:  ECVICMTEPKDTAVLPCRH

SwissProt top hitse value%identityAlignment
Q84ME1 Probable E3 ubiquitin-protein ligase LUL34.4e-2035.65Show/hide
Query:  PPLLFLEHRPAKKVRNDVNV------------HIDHHLVSFVFD--------------------------------------------------------
        PP  ++EH+ AKKV+NDVNV            +  H+LVSFVFD                                                        
Subjt:  PPLLFLEHRPAKKVRNDVNV------------HIDHHLVSFVFD--------------------------------------------------------

Query:  --LDDLSKPSPVKDIFPLVISAET-RSPSQFNDEQI-------AVLEKKNGSPFQVRVIRRLLWIDNLSAECFN----DN------------DT-GNECV
          LDDLSKPSP ++++PLVISAET  SPS  ++E +       AVLEK N   F+V+V++++LWI+    E       DN            DT G ECV
Subjt:  --LDDLSKPSPVKDIFPLVISAET-RSPSQFNDEQI-------AVLEKKNGSPFQVRVIRRLLWIDNLSAECFN----DN------------DT-GNECV

Query:  ICMTEPKDTAVLPCRH
        IC+TEPKDTAV+PCRH
Subjt:  ICMTEPKDTAVLPCRH

Q8LA32 Probable E3 ubiquitin-protein ligase LUL42.3e-2135.21Show/hide
Query:  PPLLFLEHRPAKKVRNDVNVHID------------HHLVSFVFD--------------------------------------------------------
        PP  +LE + AKKVRNDVNVH D            HHLVSFVFD                                                        
Subjt:  PPLLFLEHRPAKKVRNDVNVHID------------HHLVSFVFD--------------------------------------------------------

Query:  --LDDLSKPSPVKDIFPLVISAET-RSPSQFNDEQI-------AVLEKKNGSPFQVRVIRRLLWIDNL--------------SAECFNDNDTGNECVICM
          LDDLSKP   +D++PLVISAET  SP+  +++         AVLEK N   F+V+V++++LWI+ +              +A   +++ +G ECVICM
Subjt:  --LDDLSKPSPVKDIFPLVISAET-RSPSQFNDEQI-------AVLEKKNGSPFQVRVIRRLLWIDNL--------------SAECFNDNDTGNECVICM

Query:  TEPKDTAVLPCRH
        TE KDTAVLPCRH
Subjt:  TEPKDTAVLPCRH

Q9LFH6 Probable E3 ubiquitin-protein ligase LUL25.1e-0832.17Show/hide
Query:  DLDDLSKPSPVK----DIFPLVISAETRS-----PSQFNDEQI--AVLEKKNGSPFQVRVIRRLLWIDN---LSAECF-----------NDNDTGNECVI
        D  D+S+   V+    D++ + + AE  S      S   + QI   VLEK +   ++ RV++++LW++    +  E +           + N+ G ECVI
Subjt:  DLDDLSKPSPVK----DIFPLVISAETRS-----PSQFNDEQI--AVLEKKNGSPFQVRVIRRLLWIDN---LSAECF-----------NDNDTGNECVI

Query:  CMTEPKDTAVLPCRH
        C++EP+DT VLPCRH
Subjt:  CMTEPKDTAVLPCRH

Q9LYW5 Probable E3 ubiquitin-protein ligase LUL11.3e-0831.52Show/hide
Query:  DIFPLVISAETRSPSQ-----FNDEQIAVLEKKNGSPFQVRVIRRLLWIDNLSAECF---------NDNDTGNECVICMTEPKDTAVLPCRH
        D+FPL + AE     +      N +   V+  K     ++ V++++LW++    E           + +D G ECV+C++EP+DT VLPCRH
Subjt:  DIFPLVISAETRSPSQ-----FNDEQIAVLEKKNGSPFQVRVIRRLLWIDNLSAECF---------NDNDTGNECVICMTEPKDTAVLPCRH

Q9S752 Probable E3 ubiquitin-protein ligase LOG22.4e-1030.67Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVHIDHHLVSFVFDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQ-----------IAVLEKKNGSPFQVRVIRRLLWID
        PP  L  E    +K +      ID      VF+  +L K +   +I+PL + AE       N+E+            AV EK  G   ++RV++++LW++
Subjt:  PPPLLFLEHRPAKKVRNDVNVHIDHHLVSFVFDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQ-----------IAVLEKKNGSPFQVRVIRRLLWID

Query:  NLSAE-----------------CFNDNDTGNECVICMTEPKDTAVLPCRH
            E                   + ND G ECVIC++EP+DT VLPCRH
Subjt:  NLSAE-----------------CFNDNDTGNECVICMTEPKDTAVLPCRH

Arabidopsis top hitse value%identityAlignment
AT3G06140.1 RING/U-box superfamily protein1.7e-2235.21Show/hide
Query:  PPLLFLEHRPAKKVRNDVNVHID------------HHLVSFVFD--------------------------------------------------------
        PP  +LE + AKKVRNDVNVH D            HHLVSFVFD                                                        
Subjt:  PPLLFLEHRPAKKVRNDVNVHID------------HHLVSFVFD--------------------------------------------------------

Query:  --LDDLSKPSPVKDIFPLVISAET-RSPSQFNDEQI-------AVLEKKNGSPFQVRVIRRLLWIDNL--------------SAECFNDNDTGNECVICM
          LDDLSKP   +D++PLVISAET  SP+  +++         AVLEK N   F+V+V++++LWI+ +              +A   +++ +G ECVICM
Subjt:  --LDDLSKPSPVKDIFPLVISAET-RSPSQFNDEQI-------AVLEKKNGSPFQVRVIRRLLWIDNL--------------SAECFNDNDTGNECVICM

Query:  TEPKDTAVLPCRH
        TE KDTAVLPCRH
Subjt:  TEPKDTAVLPCRH

AT3G09770.1 RING/U-box superfamily protein1.7e-1130.67Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVHIDHHLVSFVFDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQ-----------IAVLEKKNGSPFQVRVIRRLLWID
        PP  L  E    +K +      ID      VF+  +L K +   +I+PL + AE       N+E+            AV EK  G   ++RV++++LW++
Subjt:  PPPLLFLEHRPAKKVRNDVNVHIDHHLVSFVFDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQ-----------IAVLEKKNGSPFQVRVIRRLLWID

Query:  NLSAE-----------------CFNDNDTGNECVICMTEPKDTAVLPCRH
            E                   + ND G ECVIC++EP+DT VLPCRH
Subjt:  NLSAE-----------------CFNDNDTGNECVICMTEPKDTAVLPCRH

AT3G09770.2 RING/U-box superfamily protein7.8e-1230.32Show/hide
Query:  PPPLLFLEHRPAKKVRNDVNVHIDHHLVSFVFDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQ-----------IAVLEKKNGSPFQVRVIRRLLWID
        PP  L  E    +K +      ID      VF+  +L K +   +I+PL + AE       N+E+            AV EK  G   ++RV++++LW++
Subjt:  PPPLLFLEHRPAKKVRNDVNVHIDHHLVSFVFDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQ-----------IAVLEKKNGSPFQVRVIRRLLWID

Query:  NLSAE-----------------CFNDNDTGNECVICMTEPKDTAVLPCRHTANSS
            E                   + ND G ECVIC++EP+DT VLPCRH  + S
Subjt:  NLSAE-----------------CFNDNDTGNECVICMTEPKDTAVLPCRHTANSS

AT5G03200.1 RING/U-box superfamily protein9.5e-1031.52Show/hide
Query:  DIFPLVISAETRSPSQ-----FNDEQIAVLEKKNGSPFQVRVIRRLLWIDNLSAECF---------NDNDTGNECVICMTEPKDTAVLPCRH
        D+FPL + AE     +      N +   V+  K     ++ V++++LW++    E           + +D G ECV+C++EP+DT VLPCRH
Subjt:  DIFPLVISAETRSPSQ-----FNDEQIAVLEKKNGSPFQVRVIRRLLWIDNLSAECF---------NDNDTGNECVICMTEPKDTAVLPCRH

AT5G19080.1 RING/U-box superfamily protein3.1e-2135.65Show/hide
Query:  PPLLFLEHRPAKKVRNDVNV------------HIDHHLVSFVFD--------------------------------------------------------
        PP  ++EH+ AKKV+NDVNV            +  H+LVSFVFD                                                        
Subjt:  PPLLFLEHRPAKKVRNDVNV------------HIDHHLVSFVFD--------------------------------------------------------

Query:  --LDDLSKPSPVKDIFPLVISAET-RSPSQFNDEQI-------AVLEKKNGSPFQVRVIRRLLWIDNLSAECFN----DN------------DT-GNECV
          LDDLSKPSP ++++PLVISAET  SPS  ++E +       AVLEK N   F+V+V++++LWI+    E       DN            DT G ECV
Subjt:  --LDDLSKPSPVKDIFPLVISAET-RSPSQFNDEQI-------AVLEKKNGSPFQVRVIRRLLWIDNLSAECFN----DN------------DT-GNECV

Query:  ICMTEPKDTAVLPCRH
        IC+TEPKDTAV+PCRH
Subjt:  ICMTEPKDTAVLPCRH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCGGCCGCCGCCTCTGCTGTTCTTGGAGCATCGGCCGGCGAAGAAGGTTAGAAATGATGTGAATGTGCATATTGATCATCACTTGGTTTCTTTCGTTTTTGATTT
GGATGATCTCTCAAAACCTTCACCTGTCAAAGATATATTCCCTCTTGTTATATCGGCGGAGACTCGTTCACCCTCTCAGTTCAATGATGAACAAATTGCTGTCCTAGAGA
AGAAAAATGGCAGTCCTTTCCAAGTTAGAGTGATTAGGAGGCTACTATGGATTGATAATTTATCAGCAGAATGTTTTAACGATAATGACACCGGGAATGAGTGTGTGATC
TGCATGACTGAACCAAAGGATACCGCGGTCTTACCATGCCGACATACGGCAAATTCAAGTATGTCAACAAGCTTAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCGGCCGCCGCCTCTGCTGTTCTTGGAGCATCGGCCGGCGAAGAAGGTTAGAAATGATGTGAATGTGCATATTGATCATCACTTGGTTTCTTTCGTTTTTGATTT
GGATGATCTCTCAAAACCTTCACCTGTCAAAGATATATTCCCTCTTGTTATATCGGCGGAGACTCGTTCACCCTCTCAGTTCAATGATGAACAAATTGCTGTCCTAGAGA
AGAAAAATGGCAGTCCTTTCCAAGTTAGAGTGATTAGGAGGCTACTATGGATTGATAATTTATCAGCAGAATGTTTTAACGATAATGACACCGGGAATGAGTGTGTGATC
TGCATGACTGAACCAAAGGATACCGCGGTCTTACCATGCCGACATACGGCAAATTCAAGTATGTCAACAAGCTTAGATTAG
Protein sequenceShow/hide protein sequence
MGRPPPLLFLEHRPAKKVRNDVNVHIDHHLVSFVFDLDDLSKPSPVKDIFPLVISAETRSPSQFNDEQIAVLEKKNGSPFQVRVIRRLLWIDNLSAECFNDNDTGNECVI
CMTEPKDTAVLPCRHTANSSMSTSLD