| GenBank top hits | e value | %identity | Alignment |
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| XP_016902883.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] | 1.2e-251 | 86.37 | Show/hide |
Query: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK
Subjt: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
Query: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
N E+LV++EPEN IALAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKHVTT+HET N RGK++RRKT+
Subjt: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
Query: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
E DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
Query: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERL
Subjt: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
Query: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
DKLMFMSRIPRSLQQPVW+DQ TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLLEIGNMFGLS+ERVRQLENRA
Subjt: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| XP_016902885.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo] | 1.2e-251 | 86.37 | Show/hide |
Query: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK
Subjt: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
Query: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
N E+LV++EPEN IALAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKHVTT+HET N RGK++RRKT+
Subjt: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
Query: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
E DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
Query: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERL
Subjt: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
Query: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
DKLMFMSRIPRSLQQPVW+DQ TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLLEIGNMFGLS+ERVRQLENRA
Subjt: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| XP_022143971.1 RNA polymerase sigma factor sigF, chloroplastic [Momordica charantia] | 3.7e-256 | 87.81 | Show/hide |
Query: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
G+ M ++QATPARYFSTSF+ QEQHHECR QSQILKDDKTSQMT+DRRLIERSVSIDEGS DHLVWELKHQA EWPGLLSSWPSLQMGEYK+SS+EK
Subjt: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
Query: HFNNTS-RELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNID----YSSEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETR
NNTS RE+LVE+EPE+ IALAKKALSASKQAASLVEES+LVGTNID SSEDSL KE VKSTRLQDRR K+RRVPKHVTT+HETYN RGK+TR
Subjt: HFNNTS-RELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNID----YSSEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETR
Query: RKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHI
RKT EN DPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL+NVKARLQSQF REPTLVEWAEA+G+TCQ LQSQLH FR+SREKLINANLRMVVHI
Subjt: RKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHI
Query: AKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGIT
AK+YQGRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GNYKPSKEELA HVGIT
Subjt: AKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGIT
Query: VERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQL
VERLDKL+FMSRIPRSLQQPVW+DQ TTFQE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLR+GIEDG++KTLLEIGNMFGLS+ERVRQL
Subjt: VERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQL
Query: ENRALYKLKRCCNSQGLGAYADLLT
ENRALYKLKRCCNSQGLGAYADLLT
Subjt: ENRALYKLKRCCNSQGLGAYADLLT
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| XP_031742499.1 RNA polymerase sigma factor sigF, chloroplastic [Cucumis sativus] | 2.3e-261 | 84.34 | Show/hide |
Query: MEAGLNLLSSSSPFVSRCHSRSFVHPSCS-----SSSSSSSGISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEG
MEAGLNLLSSSSPF+SRCH RSF+ PSCS SSSSSSS + MF EQA+PARYFSTSFLSQEQHHECR QSQILKDD++SQMT++RRLIERSV IDEG
Subjt: MEAGLNLLSSSSPFVSRCHSRSFVHPSCS-----SSSSSSSGISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEG
Query: SGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKER
S D DHL+WELKHQAVEWPGLLSSWP +QM EYK+SS+EK N + E+LV++EPEN IALAKKALSASKQAA LV+E++LVGT++DYSS +DSLSKE
Subjt: SGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKER
Query: RTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVE
RTV+STRLQDRR KKR+VPKHVTT+ E N RGK++RRKT+E DPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVE
Query: WAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQA CRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSP
ENVY LLGKVTEAKNYFVRAGNYKPSKEELA VGITVER DKLMFMSRIPRSLQQPVW+DQ+TTFQE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSP
Subjt: ENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSP
Query: KERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT
KERRIIRLRFGIEDG +KTLLEIGNMFGLS+ERVRQLENRALYKLKRCCNSQGLGAYADLLT
Subjt: KERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT
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| XP_038882876.1 RNA polymerase sigma factor sigF, chloroplastic [Benincasa hispida] | 9.2e-271 | 87.97 | Show/hide |
Query: MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDL
MEAGLNLLSSSS F+SRCH RSF+HPSCSSSSSSSS +SMF+EQA PARYFSTSFLSQEQHHECR QSQILKDD+TSQ T+DRRLIERSVSIDEG+ SD
Subjt: MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDL
Query: DHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKS
DHL+WE KHQAVEWPGLLSSWPSLQM EYK+SS+EK N E+LV++EPEN IALAKKALSASKQAASLV+ES+LVGTN+DY+S +DSLSKE RTV+S
Subjt: DHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKS
Query: TRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEAL
TRLQDRR KKR+VPKHVTT+HET NS+GK++RRKT EN DPNDPLRLFLWGPETKKLLTV+EESELIVQIQDLMILDNVKARLQSQF REPTLVEWAEAL
Subjt: TRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEAL
Query: GLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYG
GLTCQRLQSQL SFRISREKLINANLRMVVHIAKQYQGRGLSL DLLQ+GSLGLMKSVEKFKPQA CRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYG
Subjt: GLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYG
Query: LLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRI
LLGKVTEAKNYFVRAGNYKPSKEELA VGITVERLDKL+FMSRIPRSLQQPVW+DQ TTFQE+TADSE+DTP+ SVE+ELMRRHIRNLLSILSPKERRI
Subjt: LLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRI
Query: IRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT
IRLRFGIEDG++KTLLEIGNMFGLS+ERVRQLENRALYKLKRC NSQGLGAYADLLT
Subjt: IRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0KEQ6 RNA polymerase sigma factor | 1.1e-261 | 84.34 | Show/hide |
Query: MEAGLNLLSSSSPFVSRCHSRSFVHPSCS-----SSSSSSSGISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEG
MEAGLNLLSSSSPF+SRCH RSF+ PSCS SSSSSSS + MF EQA+PARYFSTSFLSQEQHHECR QSQILKDD++SQMT++RRLIERSV IDEG
Subjt: MEAGLNLLSSSSPFVSRCHSRSFVHPSCS-----SSSSSSSGISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEG
Query: SGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKER
S D DHL+WELKHQAVEWPGLLSSWP +QM EYK+SS+EK N + E+LV++EPEN IALAKKALSASKQAA LV+E++LVGT++DYSS +DSLSKE
Subjt: SGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKER
Query: RTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVE
RTV+STRLQDRR KKR+VPKHVTT+ E N RGK++RRKT+E DPNDPLRLFLWGPETKKLLT QEESELIVQIQDLMILDNVKARLQSQF REPTLVE
Subjt: RTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVE
Query: WAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLP
WAEALG+TCQ LQSQLH F+ SREKLINANLRMVVHIAKQYQGRGLSLHDLLQ GSLGLMKSVEKFKPQA CRF +YAYWWIR SI KAIF+HSRTIRLP
Subjt: WAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLP
Query: ENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSP
ENVY LLGKVTEAKNYFVRAGNYKPSKEELA VGITVER DKLMFMSRIPRSLQQPVW+DQ+TTFQE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSP
Subjt: ENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSP
Query: KERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT
KERRIIRLRFGIEDG +KTLLEIGNMFGLS+ERVRQLENRALYKLKRCCNSQGLGAYADLLT
Subjt: KERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLLT
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| A0A1S4E3S8 RNA polymerase sigma factor sigF, chloroplastic isoform X1 | 6.0e-252 | 86.37 | Show/hide |
Query: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK
Subjt: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
Query: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
N E+LV++EPEN IALAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKHVTT+HET N RGK++RRKT+
Subjt: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
Query: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
E DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
Query: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERL
Subjt: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
Query: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
DKLMFMSRIPRSLQQPVW+DQ TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLLEIGNMFGLS+ERVRQLENRA
Subjt: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| A0A1S4E4I4 RNA polymerase sigma factor sigF, chloroplastic isoform X2 | 6.0e-252 | 86.37 | Show/hide |
Query: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK
Subjt: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
Query: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
N E+LV++EPEN IALAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQDRR KKR+VPKHVTT+HET N RGK++RRKT+
Subjt: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
Query: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
E DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
Query: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERL
Subjt: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
Query: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
DKLMFMSRIPRSLQQPVW+DQ TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLLEIGNMFGLS+ERVRQLENRA
Subjt: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| A0A5A7V893 RNA polymerase sigma factor sigF | 1.8e-251 | 86.18 | Show/hide |
Query: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
G+ MF+EQA+PARYFSTSFLSQEQHHECR QSQILKDD+TSQMT+DRRLIERSV IDEGS SD DHL+WELKHQAVEWP LLSSWPSLQM EYK+SS EK
Subjt: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
Query: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
N E+LV++EPEN IALAKKALSASKQAA LV+ES+LVGT++DYSS +DSLSKE RTV+STRLQ+RR KKR+VPKHVTT+HET N RGK++RRKT+
Subjt: HFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSS-EDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTT
Query: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
E DPNDPLRLFLWGPETKKLLT QEES+LIVQIQDLMILDNVKA+LQSQF REPTLVEWAEALG+TCQ+LQSQLHSFR SREKLINANLRMVVHIAKQY
Subjt: ENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQY
Query: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
GRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFA+YAYWWIR SI KAIF+HSRTIRLPENVY LLGKVTEAKNY VRAGNYKPSKEELA HVGITVERL
Subjt: QGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERL
Query: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
DKLMFMSRIPRSLQQPVW+DQ TT+QE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLRFGIEDG++KTLLEIGNMFGLS+ERVRQLENRA
Subjt: DKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRA
Query: LYKLKRCCNSQGLGAYADLLT
LYKLKRCCNSQGLGAYADLLT
Subjt: LYKLKRCCNSQGLGAYADLLT
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| A0A6J1CRW8 RNA polymerase sigma factor sigF, chloroplastic | 1.8e-256 | 87.81 | Show/hide |
Query: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
G+ M ++QATPARYFSTSF+ QEQHHECR QSQILKDDKTSQMT+DRRLIERSVSIDEGS DHLVWELKHQA EWPGLLSSWPSLQMGEYK+SS+EK
Subjt: GISMFNEQATPARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSVSIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEK
Query: HFNNTS-RELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNID----YSSEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETR
NNTS RE+LVE+EPE+ IALAKKALSASKQAASLVEES+LVGTNID SSEDSL KE VKSTRLQDRR K+RRVPKHVTT+HETYN RGK+TR
Subjt: HFNNTS-RELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNID----YSSEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETR
Query: RKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHI
RKT EN DPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMIL+NVKARLQSQF REPTLVEWAEA+G+TCQ LQSQLH FR+SREKLINANLRMVVHI
Subjt: RKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHI
Query: AKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGIT
AK+YQGRGLSLHDLLQ+GSLGLMKSVEKFKPQA CRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKN+FVR GNYKPSKEELA HVGIT
Subjt: AKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGIT
Query: VERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQL
VERLDKL+FMSRIPRSLQQPVW+DQ TTFQE+TADSEVDTP+ SVE+ELMRRHIRNLLSILSPKERRIIRLR+GIEDG++KTLLEIGNMFGLS+ERVRQL
Subjt: VERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQL
Query: ENRALYKLKRCCNSQGLGAYADLLT
ENRALYKLKRCCNSQGLGAYADLLT
Subjt: ENRALYKLKRCCNSQGLGAYADLLT
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 9.2e-64 | 35.57 | Show/hide |
Query: IALAKKALSASKQAASLVEESDLVGTNIDYSSEDSLSKERRT----VKSTRLQDRRPKKRR-VPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLW
+A++ + + K AS + + + E L +E+ + V+STR +R+ ++ + + K + + + +R + D NDPLR
Subjt: IALAKKALSASKQAASLVEESDLVGTNIDYSSEDSLSKERRT----VKSTRLQDRRPKKRR-VPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLW
Query: GPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQG
+ KLLTV+EE EL IQDL+ L+ ++ L + R+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+Q+G
Subjt: GPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQG
Query: SLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQ
GL++ EKF +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ P EE+AE G++++RL ++ + PRSL
Subjt: SLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQ
Query: QPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLG
Q + +Q EV AD E T D + KE MR+ + +L L +E+++IR RFG+EDG KTL EIG M G+SRERVRQ+E+ A KLK + L
Subjt: QPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLG
Query: AY
Y
Subjt: AY
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| P26683 RNA polymerase sigma factor SigA | 2.5e-61 | 38.65 | Show/hide |
Query: TTMHETYNSRGKETRRKTTENSD--PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFR
T + + + ++RR+T D +RL+L +LL EE EL +I DL+ L+ V+ RL + R+P EWAEA+ L + +LH R
Subjt: TTMHETYNSRGKETRRKTTENSD--PNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFR
Query: ISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRA
+++K++ +NLR+VV IAK+Y RGLS DL+Q+GSLGL+++ EKF + +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + +
Subjt: ISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRA
Query: GNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTL
KP++EE+A + +T+E+L + +++P SL+ P+ ++ + + +S+ +TP D V K L+R + +L LSP+ER ++RLR+G++DG KTL
Subjt: GNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTL
Query: LEIGNMFGLSRERVRQLENRALYKLK
EIG +F ++RER+RQ+E +AL KL+
Subjt: LEIGNMFGLSRERVRQLENRALYKLK
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| P38023 RNA polymerase sigma factor SigA1 | 3.6e-60 | 40.67 | Show/hide |
Query: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLS
D +RL+L +LL EE EL QI DL+ L+ ++ L Q R P+ EWA A+ + +L R +++K++ +NLR+VV IAK+Y RGLS
Subjt: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLS
Query: LHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFM
DL+Q+GSLGL+++ EKF + +F+TYA WWIRQ+I +AI + SRTIRLP ++Y + ++ + + KP++EE+A + +T+E+L +
Subjt: LHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFM
Query: SRIPRSLQQPVWSDQKTTFQE-VTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLK
+++P SL+ P+ ++ + + + AD E TP D V K L+R + +LS LSP+ER ++RLR+G++DG KTL EIG +F ++RER+RQ+E +AL KL+
Subjt: SRIPRSLQQPVWSDQKTTFQE-VTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLK
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| Q31ME3 RNA polymerase sigma factor SigA2 | 3.0e-54 | 39.23 | Show/hide |
Query: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLS
D +R +L +LLT +EE Q+Q LM+L + + L+ + EP+ EWA A+ L + L Q+ + ++ K+I ANLR+VV IAK+YQ R +
Subjt: DPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLS
Query: LHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFM
DL+Q+G+LGL + VEKF P +F+TYAYWWIRQ+I +AI + SRTIRLP ++ L K+ + + + + ELAE + + +E++ + + M
Subjt: LHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFM
Query: SRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKR
+R P SL V Q T QE+ D E +P+D VE+E +RR +RNL++ L+P+++ +I LR+G+++G+ +L ++G +SRERVR+LE +A+ L+R
Subjt: SRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKR
Query: CCNSQGLGAYA
S+ L YA
Subjt: CCNSQGLGAYA
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 1.5e-143 | 52.46 | Show/hide |
Query: MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATP----------ARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSV
MEA NL+SSS F ++ H + SS SS SS + + ++ TP +R+F S LSQE E R S L+DD+TSQ+T++RR + V
Subjt: MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATP----------ARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSV
Query: SIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEE-----SDLVGTNIDYS
S E + +L H W L+S S E K+ ++ L + E + +ALA+KALSASKQAA LV++ SD + ++ S
Subjt: SIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEE-----SDLVGTNIDYS
Query: SEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQ
S SL ++ V+S R +RR K RR PK E Y + ++K + +D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L+SQ
Subjt: SEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQ
Query: FSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIF
EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQ+GS+GLMKSVEKFKPQ+ CRFATYAYWWIRQSIRK+IF
Subjt: FSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIF
Query: EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHI
++SRTIRLPENVY LLGKV+EA+ V+ GNY+PSKEELA HVG++ E+LDKL++ +R P S+QQP+WSDQ TTFQE+T DS ++TP SV K+LMR H+
Subjt: EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHI
Query: RNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLL
RNLL++LSPKERRII+LRFGI+ G+Q++L EIG ++GLS+ERVRQLE+RALY+LK+ NS GL AYADLL
Subjt: RNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLL
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 6.5e-65 | 35.57 | Show/hide |
Query: IALAKKALSASKQAASLVEESDLVGTNIDYSSEDSLSKERRT----VKSTRLQDRRPKKRR-VPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLW
+A++ + + K AS + + + E L +E+ + V+STR +R+ ++ + + K + + + +R + D NDPLR
Subjt: IALAKKALSASKQAASLVEESDLVGTNIDYSSEDSLSKERRT----VKSTRLQDRRPKKRR-VPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLW
Query: GPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQG
+ KLLTV+EE EL IQDL+ L+ ++ L + R+PT +WA A G+ + L+ ++H + ++K+I +N+R+V+ IAK YQG G++L DL+Q+G
Subjt: GPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQG
Query: SLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQ
GL++ EKF +F+TYA+WWI+Q++RK++ + SR IRLP ++ +V EA+ P EE+AE G++++RL ++ + PRSL
Subjt: SLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQ
Query: QPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLG
Q + +Q EV AD E T D + KE MR+ + +L L +E+++IR RFG+EDG KTL EIG M G+SRERVRQ+E+ A KLK + L
Subjt: QPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLG
Query: AY
Y
Subjt: AY
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| AT1G64860.1 sigma factor A | 5.2e-30 | 28.57 | Show/hide |
Query: VSSMEKHF--NNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSSEDSLSKERRTVKSTRLQDRRPKKRRVP----KHVTTMHETYN
V+S EK + N T +EL EEE + L +S S +A L+++S ++ + + S E ++S E + R K+++P ++
Subjt: VSSMEKHF--NNTSRELLVEEEPENAIALAKKALSASKQAASLVEESDLVGTNIDYSSEDSLSKERRTVKSTRLQDRRPKKRRVP----KHVTTMHETYN
Query: SRGKE--TRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLIN
++ K T K + +R ++ G ++ +L+ E L +I+ + LD+ K+RL+ + EP+ + A +L ++ LQ+ L ++REKL
Subjt: SRGKE--TRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLIN
Query: ANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKE
+N+R+V+ IA++Y G + DL+Q G +GL++ +EKF R +TY YWWIRQ + +A+ ++SRT+RLP +++ LG + AK G PS +
Subjt: ANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKE
Query: ELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQK----TTFQEVTADSEVD-TPNDSVEKELMRRHIRNLLS-ILSPKERRIIRLRFGIEDGEQKTLLE
+AE + ++ +++ SL + + T AD+ ++ P + ++ + L+S L +E+ IIRL +G+ D E T +
Subjt: ELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQK----TTFQEVTADSEVD-TPNDSVEKELMRRHIRNLLS-ILSPKERRIIRLRFGIEDGEQKTLLE
Query: IGNMFGLSRERVRQLENRALYKLKRCCNSQGLGA
I GLSRERVRQ+ AL KLK + + A
Subjt: IGNMFGLSRERVRQLENRALYKLKRCCNSQGLGA
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| AT2G36990.1 RNApolymerase sigma-subunit F | 1.1e-144 | 52.46 | Show/hide |
Query: MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATP----------ARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSV
MEA NL+SSS F ++ H + SS SS SS + + ++ TP +R+F S LSQE E R S L+DD+TSQ+T++RR + V
Subjt: MEAGLNLLSSSSPFVSRCHSRSFVHPSCSSSSSSSSGISMFNEQATP----------ARYFSTSFLSQEQHHECRAQSQILKDDKTSQMTIDRRLIERSV
Query: SIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEE-----SDLVGTNIDYS
S E + +L H W L+S S E K+ ++ L + E + +ALA+KALSASKQAA LV++ SD + ++ S
Subjt: SIDEGSGSDLDHLVWELKHQAVEWPGLLSSWPSLQMGEYKVSSMEKHFNNTSRELLVEEEPENAIALAKKALSASKQAASLVEE-----SDLVGTNIDYS
Query: SEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQ
S SL ++ V+S R +RR K RR PK E Y + ++K + +D +D L+LFLWGPETK+LLT +EE+ELI IQ L+ L+ VK +L+SQ
Subjt: SEDSLSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDNVKARLQSQ
Query: FSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIF
EPT+ EWAEA+G++ L+S +H R SREKLI ANLR+VVHIAKQYQ RGL+ DLLQ+GS+GLMKSVEKFKPQ+ CRFATYAYWWIRQSIRK+IF
Subjt: FSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIRQSIRKAIF
Query: EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHI
++SRTIRLPENVY LLGKV+EA+ V+ GNY+PSKEELA HVG++ E+LDKL++ +R P S+QQP+WSDQ TTFQE+T DS ++TP SV K+LMR H+
Subjt: EHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVEKELMRRHI
Query: RNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLL
RNLL++LSPKERRII+LRFGI+ G+Q++L EIG ++GLS+ERVRQLE+RALY+LK+ NS GL AYADLL
Subjt: RNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAYADLL
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| AT3G53920.1 RNApolymerase sigma-subunit C | 4.9e-36 | 26.96 | Show/hide |
Query: QEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEK
+ E+E+ ++ + ++ ++ +L+ + + +L WA A G+ + L LH R++L+ + +V+ +A+ Y+G G++ DL+Q G +G+++ E+
Subjt: QEESELIVQIQDLMILDNVKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEK
Query: FKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK-PSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKT
F +F+TY +WIR+S+ + H+R + +P ++ + + +A+ + K + EE+A+ G +V+++ ++ S+ + V T
Subjt: FKPQARCRFATYAYWWIRQSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYK-PSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKT
Query: TFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAY
F E T D+ +++P ++V ++ RR I +LL L P+E++++ LR+G++D K+L EIG + +S+E +R++E RA+ KL+ N++ L Y
Subjt: TFQEVTADSEVDTPNDSVEKELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAY
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| AT5G13730.1 sigma factor 4 | 1.9e-40 | 31.82 | Show/hide |
Query: TNIDYSSEDS--LSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDN
T +D + S + E+ ++S + + RR ++RRV E N+ G E +T + + + G L+ EE +L + +++ L+N
Subjt: TNIDYSSEDS--LSKERRTVKSTRLQDRRPKKRRVPKHVTTMHETYNSRGKETRRKTTENSDPNDPLRLFLWGPETKKLLTVQEESELIVQIQDLMILDN
Query: VKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIR
+ ++ E V A G + L + +REK+ R+VV IA YQG+GL+L DL+Q+GS+GL++ E+F P + +TY YWWI+
Subjt: VKARLQSQFSREPTLVEWAEALGLTCQRLQSQLHSFRISREKLINANLRMVVHIAKQYQGRGLSLHDLLQQGSLGLMKSVEKFKPQARCRFATYAYWWIR
Query: QSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVE
Q+I +AI SR ++LP +++ L KV EA N R +PS EE+AEH+ + V + + SR P SL + + + T QE+ + P + V+
Subjt: QSIRKAIFEHSRTIRLPENVYGLLGKVTEAKNYFVRAGNYKPSKEELAEHVGITVERLDKLMFMSRIPRSLQQPVWSDQKTTFQEVTADSEVDTPNDSVE
Query: KELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAY
+E M+ I LL L+ +E R++ L FG+ + EIG LSRERVRQ+ AL KL+ N L Y
Subjt: KELMRRHIRNLLSILSPKERRIIRLRFGIEDGEQKTLLEIGNMFGLSRERVRQLENRALYKLKRCCNSQGLGAY
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