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Sed0007544 (gene) of Chayote v1 genome

Gene IDSed0007544
OrganismSechium edule (Chayote v1)
DescriptionWD_REPEATS_REGION domain-containing protein
Genome locationLG05:2506218..2507038
RNA-Seq ExpressionSed0007544
SyntenySed0007544
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2724061.1 hypothetical protein I3760_01G000500, partial [Carya illinoinensis]1.5e-0456.58Show/hide
Query:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        +LV+G   GF     A   + SRE  VP L   +  H GGVVAVELSRVI G  +LIT+ ADKTLAIW TISFK L
Subjt:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
KAG6666004.1 hypothetical protein CIPAW_01G000400, partial [Carya illinoinensis]1.5e-0456.58Show/hide
Query:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        +LV+G   GF     A   + SRE  VP L   +  H GGVVAVELSRVI G  +LIT+ ADKTLAIW TISFK L
Subjt:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
KAG6728899.1 hypothetical protein I3842_01G000300 [Carya illinoinensis]1.5e-0456.58Show/hide
Query:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        +LV+G   GF     A   + SRE  VP L   +  H GGVVAVELSRVI G  +LIT+ ADKTLAIW TISFK L
Subjt:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
XP_042971922.1 uncharacterized protein LOC122303981 isoform X1 [Carya illinoinensis]1.5e-0456.58Show/hide
Query:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        +LV+G   GF     A   + SRE  VP L   +  H GGVVAVELSRVI G  +LIT+ ADKTLAIW TISFK L
Subjt:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
XP_042971936.1 uncharacterized protein LOC122303981 isoform X3 [Carya illinoinensis]1.5e-0456.58Show/hide
Query:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        +LV+G   GF     A   + SRE  VP L   +  H GGVVAVELSRVI G  +LIT+ ADKTLAIW TISFK L
Subjt:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
TrEMBL top hitse value%identityAlignment
A0A2I4DL18 uncharacterized protein LOC1089811759.3e-0555.26Show/hide
Query:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        +LV+G   GF     A   + SRE  VP L   +  H GGVVA+ELSRVI G  +LIT+ ADKTLAIW TISFK L
Subjt:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
A0A2N9ITM7 WD_REPEATS_REGION domain-containing protein3.2e-0552.44Show/hide
Query:  EVHELYILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        EV E+ +LV+G   G      A   + SRE  VP L   +  H GGVVAVELSRV+ G  +LIT+ ADKTLAIW TI+FK L
Subjt:  EVHELYILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
A0A5A7SMW9 WD_REPEATS_REGION domain-containing protein1.6e-0455.26Show/hide
Query:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        +LV+G   G      A + + SRE  VP L   +  H GGVVAVELSRVI G  +LIT+ ADKTLAIW TISFK L
Subjt:  ILVTGR--GFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
A0A6A4P520 Putative transcription factor WD40-like family1.2e-0466.67Show/hide
Query:  KMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        K SRE  VP L   +  H GGVVAVELSRVI G  +LIT+ ADKTLAIW TISFK L
Subjt:  KMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
A0A6A5P488 WD_REPEATS_REGION domain-containing protein (Fragment)1.2e-0466.67Show/hide
Query:  KMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        K SRE  VP L   +  H GGVVAVELSRVI G  +LIT+ ADKTLAIW TISFK L
Subjt:  KMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G24710.1 Transducin/WD40 repeat-like superfamily protein1.1e-0562.79Show/hide
Query:  ISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL
        +  H GGVVAVELSRV     +LIT+ ADKTLAIW T++FK L
Subjt:  ISGHGGGVVAVELSRVIVGVSKLITV-ADKTLAIWYTISFKVL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGTCGGATTTCGCCGATAAAGTTTCAGAGAACGATTGATGATGGTATCAATAGCTTTTTTCAAGAGGTTCATGAGCTTTACATTCTAGTTACCGGTCGGGGATT
CTGCCGATTTTGTCGAGCAGTCAGCCGGAAAATGTCAAGGGAAAATCGGGTTCCATCCCTTTTATACCTTATTTCTGGACATGGTGGTGGGGTAGTAGCTGTCGAACTTT
CCAGAGTGATTGTAGGTGTTTCAAAACTTATCACAGTAGCAGACAAAACACTTGCTATTTGGTACACCATCTCTTTTAAGGTTCTTGAATATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGTCGGATTTCGCCGATAAAGTTTCAGAGAACGATTGATGATGGTATCAATAGCTTTTTTCAAGAGGTTCATGAGCTTTACATTCTAGTTACCGGTCGGGGATT
CTGCCGATTTTGTCGAGCAGTCAGCCGGAAAATGTCAAGGGAAAATCGGGTTCCATCCCTTTTATACCTTATTTCTGGACATGGTGGTGGGGTAGTAGCTGTCGAACTTT
CCAGAGTGATTGTAGGTGTTTCAAAACTTATCACAGTAGCAGACAAAACACTTGCTATTTGGTACACCATCTCTTTTAAGGTTCTTGAATATTAA
Protein sequenceShow/hide protein sequence
MAGRISPIKFQRTIDDGINSFFQEVHELYILVTGRGFCRFCRAVSRKMSRENRVPSLLYLISGHGGGVVAVELSRVIVGVSKLITVADKTLAIWYTISFKVLEY