; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0007548 (gene) of Chayote v1 genome

Gene IDSed0007548
OrganismSechium edule (Chayote v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationLG07:33339098..33341464
RNA-Seq ExpressionSed0007548
SyntenySed0007548
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002110 - Ankyrin repeat
IPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]2.8e-7082.35Show/hide
Query:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
        MAS+SC++SIN+ P S +  RPP KL S FLG QS LR  SP+ +IGPSNGSR+TCW N RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA
        KMEALLSQDIHPVDILLMLAASEGD PKLEELLRAGA+YDVKD DGRTA+DRA NEEIKDFILNFS +KA
Subjt:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]2.5e-7185.88Show/hide
Query:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY
        MAS+SC S SIN+ P+SL+  RPPLKL SQFLG QS LR  SPI AIGPSNGSR+TCW N RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY
Subjt:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY

Query:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK
        DKMEALLSQDIHPVDILLMLAASEGD PKLEELLRAGA YDVKD DGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]7.4e-7185.29Show/hide
Query:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY
        MAS+SC S SIN+ P+S +  RPPLKL SQFLG QS LR  SPI AIGPSNGSR+TCW N RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY
Subjt:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY

Query:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK
        DKMEALLSQDIHPVDILLMLAASEGD PKLEELLRAGA YDVKD DGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK

XP_023520446.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita pepo subsp. pepo]4.8e-7084.12Show/hide
Query:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY
        MAS+SC S SIN+ P+S +  RPPLKL SQFLG QS  R  SPI AIGPSNGSR+TCW N RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY
Subjt:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY

Query:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK
        DKMEALLSQDIHPVDILLMLAASEGD PKLEELL+AGA YDVKD DGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]8.8e-7284.12Show/hide
Query:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
        MAS+SC+ S+N+ P S +  RPP KL SQFLG QS LR  SP+ AIGPSNGSR+TCW N RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA
        KMEALLSQDIHPVDILLMLAASEGD PKLEELLRAGANYDVKD DGRTAIDRAPNEEIKDFILN SV+ A
Subjt:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein1.4e-7082.35Show/hide
Query:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
        MAS+SC++SIN+ P S +  RPP KL S FLG QS LR  SP+ +IGPSNGSR+TCW N RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA
        KMEALLSQDIHPVDILLMLAASEGD PKLEELLRAGA+YDVKD DGRTA+DRA NEEIKDFILNFS +KA
Subjt:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT5.2e-7082.35Show/hide
Query:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
        MAS+SC+ SIN+ P S +  RPP KL S FLG QS LR  SP+ +IGPSNGSR+TCW N RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA
        KMEALLSQDIHPVDILLMLAASEGD PKLEELLRAGA+YDVKD DGRTAIDRA NEEIKDFIL FS +KA
Subjt:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT5.2e-7082.35Show/hide
Query:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
        MAS+SC+ SIN+ P S +  RPP KL S FLG QS LR  SP+ +IGPSNGSR+TCW N RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA
        KMEALLSQDIHPVDILLMLAASEGD PKLEELLRAGA+YDVKD DGRTAIDRA NEEIKDFIL FS +KA
Subjt:  KMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT1.2e-7185.88Show/hide
Query:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY
        MAS+SC S SIN+ P+SL+  RPPLKL SQFLG QS LR  SPI AIGPSNGSR+TCW N RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY
Subjt:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY

Query:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK
        DKMEALLSQDIHPVDILLMLAASEGD PKLEELLRAGA YDVKD DGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT3.6e-7185.29Show/hide
Query:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY
        MAS+SC S SIN+ P+S +  RPPLKL SQFLG QS LR  SPI AIGPSNGSR+TCW N RQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY
Subjt:  MASISC-SASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY

Query:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK
        DKMEALLSQDIHPVDILLMLAASEGD PKLEELLRAGA YDVKD DGRTAIDRAPN+EIKDFILNFSV+K
Subjt:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT2.5e-4560.12Show/hide
Query:  MASISCSASINVPPSSLHCLRPPLK--LCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEG
        MASI C+  ++   SS        +    +  LG+    RL++ + A   S     TC+  F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG
Subjt:  MASISCSASINVPPSSLHCLRPPLK--LCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEG

Query:  TYDKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA
        TYDKMEALL+QDIHPVDILLMLAASEGD PKLEELLRAGA YDVKD DGRTA+DRA  ++ ++FIL F+   A
Subjt:  TYDKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT2.5e-4560.12Show/hide
Query:  MASISCSASINVPPSSLHCLRPPLK--LCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEG
        MASI C+  ++   SS        +    +  LG+    RL++ + A   S     TC+  F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEG
Subjt:  MASISCSASINVPPSSLHCLRPPLK--LCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEG

Query:  TYDKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA
        TYDKMEALL+QDIHPVDILLMLAASEGD PKLEELLRAGA YDVKD DGRTA+DRA  ++ ++FIL F+   A
Subjt:  TYDKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT6.5e-5467.25Show/hide
Query:  SISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY
        S SC+ S+     S     P L L S+FLG ++ L+L    A +GPSNGSR+TCW  F +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY
Subjt:  SISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY

Query:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA
         KMEALL+ +IHPVDILLMLAA+EGD PK+EELL+AGA+Y VKDADGRTAIDRA +EEI+D IL +S QKA
Subjt:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein4.7e-5567.25Show/hide
Query:  SISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY
        S SC+ S+     S     P L L S+FLG ++ L+L    A +GPSNGSR+TCW  F +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY
Subjt:  SISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTY

Query:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA
         KMEALL+ +IHPVDILLMLAA+EGD PK+EELL+AGA+Y VKDADGRTAIDRA +EEI+D IL +S QKA
Subjt:  DKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTGCAAAAGCTCATTTGGTGTTTACAGAAGCCAAGCTGCTGCAGATACTACTCTAATGGCTTCCATCTCCTGCTCTGCCTCCATAAATGTGCCCCCAAGCTCCCT
CCATTGCCTTCGCCCCCCATTGAAATTGTGCTCCCAGTTTCTTGGTTTTCAATCCAAGCTCCGATTGGCCTCACCCATCGCCGCCATTGGACCCTCCAATGGCTCTAGAT
CTACCTGCTGGTTGAATTTTAGGCAAAACGCCGAAGGTGCCGGCATTTATGGCAGCCAGTCTCGAGATGACTTCAACAGAGACGATGTTGAGCAGTATTTTAACTACATG
GGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGTTGATGCTGGCTGCATCAGAAGGGGACACACC
AAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGCAGATGGCCGAACCGCCATTGATAGGGCACCTAATGAAGAAATTAAGGATTTTATTCTTA
ATTTTTCAGTTCAAAAGGCATAA
mRNA sequenceShow/hide mRNA sequence
CCTCATTGGGGGTGGATGGATAGAATCAAGAATGTGCTGCAAAAGCTCATTTGGTGTTTACAGAAGCCAAGCTGCTGCAGATACTACTCTAATGGCTTCCATCTCCTGCT
CTGCCTCCATAAATGTGCCCCCAAGCTCCCTCCATTGCCTTCGCCCCCCATTGAAATTGTGCTCCCAGTTTCTTGGTTTTCAATCCAAGCTCCGATTGGCCTCACCCATC
GCCGCCATTGGACCCTCCAATGGCTCTAGATCTACCTGCTGGTTGAATTTTAGGCAAAACGCCGAAGGTGCCGGCATTTATGGCAGCCAGTCTCGAGATGACTTCAACAG
AGACGATGTTGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTAGAGGGTACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGT
TGATGCTGGCTGCATCAGAAGGGGACACACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAATTATGATGTGAAAGATGCAGATGGCCGAACCGCCATTGATAGGGCA
CCTAATGAAGAAATTAAGGATTTTATTCTTAATTTTTCAGTTCAAAAGGCATAATTTGGTCTCTAAGTTTAGTTTCTCTTTTTTGTTTTTTGTTTCTGGAAATGGCAATA
TTTTGATAACGAAGGGTTTAGAAAGAGGCTTAAGATTTGTATAATTTCACTAAATGGTACACCCTGTTTTCATCCATTGGAGAATGTCTTCTACTGCATCTAAGATCTTG
TGTCTGTTAGTTTAGAGTTTGATAACTTTGGTTTTGATCTTTTAAAAGAGATATTTTTTAATTATCAAACTTGTTCAAAGAATCAAAATTGTTGTACTTCTCTTCCAGAC
TTCAAAATATCAAGTCATTGTCTGCTAAAATAAACTGC
Protein sequenceShow/hide protein sequence
MCCKSSFGVYRSQAAADTTLMASISCSASINVPPSSLHCLRPPLKLCSQFLGFQSKLRLASPIAAIGPSNGSRSTCWLNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYM
GMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDTPKLEELLRAGANYDVKDADGRTAIDRAPNEEIKDFILNFSVQKA