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Sed0007564 (gene) of Chayote v1 genome

Gene IDSed0007564
OrganismSechium edule (Chayote v1)
Descriptionprotein SKIP34
Genome locationLG14:19513094..19513357
RNA-Seq ExpressionSed0007564
SyntenySed0007564
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7034234.1 Protein SKIP34, partial [Cucurbita argyrosperma subsp. argyrosperma]7.4e-2673.96Show/hide
Query:  MCNGRHRSLFRSSLS----------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
        MCNG HRSLFR S+S          G+ASVVDNL+ RLAETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYL+R+Y DRQ++VVR+L P+SR
Subjt:  MCNGRHRSLFRSSLS----------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
XP_011657944.1 protein SKIP34 [Cucumis sativus]3.7e-2573.68Show/hide
Query:  MCNGRHRSLFRSSL---------SGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
        MCNG HR LFR SL         +G  SVVDNL+GRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYL+RQY DRQ++VVR+L P+SR
Subjt:  MCNGRHRSLFRSSL---------SGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
XP_022950522.1 protein SKIP34 [Cucurbita moschata]1.1e-2675Show/hide
Query:  MCNGRHRSLFRSSLS----------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
        MCNG HRSLFR S+S          G+ASVVDNL+GRLAETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYL+R+Y DRQ++VVR+L P+SR
Subjt:  MCNGRHRSLFRSSLS----------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
XP_022978829.1 protein SKIP34 [Cucurbita maxima]3.9e-2775.79Show/hide
Query:  MCNGRHRSLFRSSLS---------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
        MCNG HRSLFR S+S         G+ASVVDNL+GRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYL+R+YRDRQ++VVR+L PLSR
Subjt:  MCNGRHRSLFRSSLS---------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]1.5e-2674.74Show/hide
Query:  MCNGRHRSLFRSSLS---------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
        MCNG HRSLFR ++S         G+ASVVDNL+GRLAETESRLAQVRAREA LSRLLEEMKRLV VMEILENYL+R+YRDRQ++VVR+L P+SR
Subjt:  MCNGRHRSLFRSSLS---------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
TrEMBL top hitse value%identityAlignment
A0A0A0KIR5 Uncharacterized protein1.8e-2573.68Show/hide
Query:  MCNGRHRSLFRSSL---------SGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
        MCNG HR LFR SL         +G  SVVDNL+GRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYL+RQY DRQ++VVR+L P+SR
Subjt:  MCNGRHRSLFRSSL---------SGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
A0A5D3CN14 Protein SKIP344.0e-2573.68Show/hide
Query:  MCNGRHRSLFRSS---------LSGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
        MCNG HR LFR S          +G ASVVDNL+GRL ETE RLAQVRAREAELSRLLEEMKRLVSVMEILENYL+RQY DRQ++VVR+L P+SR
Subjt:  MCNGRHRSLFRSS---------LSGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
A0A6J1BVG6 protein SKIP344.0e-2577.78Show/hide
Query:  MCNGRHRSLFRSSLSGEASVV-----DNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLS
        MCNG  RSLFR SL+   S V     DNL+GRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYL+RQYRDRQ++ VR+L PLS
Subjt:  MCNGRHRSLFRSSLSGEASVV-----DNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLS
A0A6J1GF20 protein SKIP345.5e-2775Show/hide
Query:  MCNGRHRSLFRSSLS----------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
        MCNG HRSLFR S+S          G+ASVVDNL+GRLAETESRLAQVRAREA LSRLLEEMKRLVSVMEILENYL+R+Y DRQ++VVR+L P+SR
Subjt:  MCNGRHRSLFRSSLS----------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
A0A6J1IV54 protein SKIP341.9e-2775.79Show/hide
Query:  MCNGRHRSLFRSSLS---------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
        MCNG HRSLFR S+S         G+ASVVDNL+GRLAETESRLAQVRAREA LSR+LEEMKRLVSVMEIL+NYL+R+YRDRQ++VVR+L PLSR
Subjt:  MCNGRHRSLFRSSLS---------GEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSR
SwissProt top hitse value%identityAlignment
Q8GWU7 Protein SKIP341.2e-1553.26Show/hide
Query:  MCNGRHRSL-FRSSL------SGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLS
        MC G ++SL  RSSL        + SVVD+L+ RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R++++++D + R+  P+S
Subjt:  MCNGRHRSL-FRSSL------SGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLS
Arabidopsis top hitse value%identityAlignment
AT5G65495.1 unknown protein8.8e-1753.26Show/hide
Query:  MCNGRHRSL-FRSSL------SGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLS
        MC G ++SL  RSSL        + SVVD+L+ RLAETE+RL + RAREAELSR LE MKR VSVMEI+E +L+R++++++D + R+  P+S
Subjt:  MCNGRHRSL-FRSSL------SGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCAACGGCCGCCACCGATCTCTGTTCAGAAGCAGCCTCTCCGGCGAGGCTTCCGTCGTGGACAATCTACAGGGTCGATTGGCGGAAACGGAGTCGCGACTGGCTCA
AGTTAGGGCTCGAGAGGCGGAGCTCAGCCGGCTCTTGGAGGAGATGAAGCGATTAGTCTCTGTGATGGAGATCCTCGAGAACTACCTCCAACGCCAGTATCGCGACCGCC
AAGATCATGTGGTTCGCATTCTTCCTCCTCTATCTCGAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGCAACGGCCGCCACCGATCTCTGTTCAGAAGCAGCCTCTCCGGCGAGGCTTCCGTCGTGGACAATCTACAGGGTCGATTGGCGGAAACGGAGTCGCGACTGGCTCA
AGTTAGGGCTCGAGAGGCGGAGCTCAGCCGGCTCTTGGAGGAGATGAAGCGATTAGTCTCTGTGATGGAGATCCTCGAGAACTACCTCCAACGCCAGTATCGCGACCGCC
AAGATCATGTGGTTCGCATTCTTCCTCCTCTATCTCGAAATTAG
Protein sequenceShow/hide protein sequence
MCNGRHRSLFRSSLSGEASVVDNLQGRLAETESRLAQVRAREAELSRLLEEMKRLVSVMEILENYLQRQYRDRQDHVVRILPPLSRN