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Sed0007667 (gene) of Chayote v1 genome

Gene IDSed0007667
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan protein 23
Genome locationLG03:16739835..16740014
RNA-Seq ExpressionSed0007667
SyntenySed0007667
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035760.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa]1.9e-0967.74Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLG---ATLIAYCLQ
        MEMK  A   FI VVASL++V A++E+ +PAPGPSS  SATLPVVGTLLG   A+LIAYCLQ
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLG---ATLIAYCLQ
KAE8649766.1 hypothetical protein Csa_011936, partial [Cucumis sativus]2.3e-0767.86Show/hide
Query:  AVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLG---ATLIAYCLQ
        A   FI V ASL++V A++E+ +PAPGPSS+ASATLPVVGTLLG   A+LIAYCLQ
Subjt:  AVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLG---ATLIAYCLQ
KAE9590747.1 hypothetical protein Lalb_Chr20g0110921 [Lupinus albus]1.7e-0555.36Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
        MEMKK+A    ++  AS++   AA E PAPAPGPS+SASATLP+VG+L+GA+++++
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
PON58107.1 hypothetical protein PanWU01x14_168770 [Parasponia andersonii]5.8e-0662.5Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
        ME+KK++    IV  ASL+ V AANE  APAPGPSS ASATLPVVG+L+GA+L+++
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
PON91671.1 hypothetical protein TorRG33x02_125020 [Trema orientale]2.6e-0662.5Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
        ME+KK+++   IV  ASL+ V AANE  APAPGPSS ASATLPVVG+L+GA+L+++
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
TrEMBL top hitse value%identityAlignment
A0A2P5CAP7 Uncharacterized protein2.8e-0662.5Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
        ME+KK++    IV  ASL+ V AANE  APAPGPSS ASATLPVVG+L+GA+L+++
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
A0A2P5F1L3 Uncharacterized protein1.3e-0662.5Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
        ME+KK+++   IV  ASL+ V AANE  APAPGPSS ASATLPVVG+L+GA+L+++
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
A0A5D3E271 Arabinogalactan peptide 23-like9.3e-1067.74Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLG---ATLIAYCLQ
        MEMK  A   FI VVASL++V A++E+ +PAPGPSS  SATLPVVGTLLG   A+LIAYCLQ
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLG---ATLIAYCLQ
A0A6A4NW43 Uncharacterized protein8.1e-0655.36Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
        MEMKK+A    ++  AS++   AA E PAPAPGPS+SASATLP+VG+L+GA+++++
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
A0A6A5N125 Uncharacterized protein8.1e-0655.36Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
        MEMKK+A    ++  AS++   AA E PAPAPGPS+SASATLP+VG+L+GA+++++
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
SwissProt top hitse value%identityAlignment
Q8LD43 Arabinogalactan protein 405.6e-0444.64Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
        MEMK + V  FI  V   ++  A  ESPAP+PG SS+++   PVVG+++ A+L A+
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
Q8S2W4 Arabinogalactan protein 231.3e-0552.73Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIA
        MEMKK+A    +   AS+  V AA E  APAPGP+S+ASA LP +G+L+GA+L++
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIA
Arabidopsis top hitse value%identityAlignment
AT3G20865.1 arabinogalactan protein 404.0e-0544.64Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
        MEMK + V  FI  V   ++  A  ESPAP+PG SS+++   PVVG+++ A+L A+
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAY
AT3G57690.1 arabinogalactan protein 239.5e-0752.73Show/hide
Query:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIA
        MEMKK+A    +   AS+  V AA E  APAPGP+S+ASA LP +G+L+GA+L++
Subjt:  MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAATGAAGAAGTTGGCTGTTTTCACCTTCATTGTCGTTGTCGCCTCTTTGAACATCGTTTTCGCTGCCAACGAATCACCGGCCCCAGCCCCCGGGCCATCGAGTAG
CGCCTCCGCTACGTTGCCGGTCGTCGGGACATTGCTAGGTGCCACTCTCATTGCCTACTGTCTCCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAATGAAGAAGTTGGCTGTTTTCACCTTCATTGTCGTTGTCGCCTCTTTGAACATCGTTTTCGCTGCCAACGAATCACCGGCCCCAGCCCCCGGGCCATCGAGTAG
CGCCTCCGCTACGTTGCCGGTCGTCGGGACATTGCTAGGTGCCACTCTCATTGCCTACTGTCTCCAGTAA
Protein sequenceShow/hide protein sequence
MEMKKLAVFTFIVVVASLNIVFAANESPAPAPGPSSSASATLPVVGTLLGATLIAYCLQ