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Sed0007673 (gene) of Chayote v1 genome

Gene IDSed0007673
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L18a-like protein
Genome locationLG05:36906270..36908935
RNA-Seq ExpressionSed0007673
SyntenySed0007673
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146004.1 60S ribosomal protein L18a-like protein [Cucumis sativus]2.0e-5575.32Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQ-----PTSDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS +DKSAAVGVVVHHHH E NS HPHYGTFQGVANYPP+GF H       P SD  DPSQ Q     YQ +PGYAI EG PVRE R  LPCCGIGIGWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQ-----PTSDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGFF A IPWYAGAI+I+CGR DYREKPGYVACSIAAV+ TVAIIFGA READ W
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

XP_008452440.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]4.5e-5575.95Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS EDKSAAVGVVVHHHH E NS HPHYGTFQGVANYPP+ FP  QPT     SD  DPSQ Q     YQ +PGYAI EG PVRE    LPCCGIGIGWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGFF A IPWYAGAI+ILCGR DYREKPGYVACSIAAV+ T+AIIFGA READ W
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

XP_022135554.1 60S ribosomal protein L18a-like protein [Momordica charantia]8.4e-5470.89Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQP-----TSDFYDPSQSQP----YQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS E+K+AA   VV HHH E NSGHP YGTFQGVANYPP+GFP  QP      SD YDPSQSQP    YQ +PGYAI EG PVRERR  LPCCGIGIGWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQP-----TSDFYDPSQSQP----YQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGFF  GIPWYAGAI+ILCGR DYREKPGYVAC+IAA+L T+A+I G  +  D W
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

XP_023536200.1 60S ribosomal protein L18a-like protein [Cucurbita pepo subsp. pepo]2.5e-5072.15Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQP----YQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS EDKSAAVGVVVHHHH EPN GHPHYGTFQGVANYPP+GFP  QPT     SDF D SQ Q     YQ + GYAI EG PVRE R  LPCCGIG GWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQP----YQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGF      WY GAI+ILCGR  YREKPGYVACSIAAV+ TVAIIFGA + AD W
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

XP_038896754.1 60S ribosomal protein L18a-like protein [Benincasa hispida]1.3e-5778.48Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQP----YQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS EDKSAAVGVVVHHHH E NSGHP YGTFQGVANYPP+GFP  QPT     SD  DPSQ Q     YQ +PGY I EG PVRERR  LPCCGIGIGWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQP----YQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGFF A IPWYAGAI+ILCGR DYREKPGYVAC IAAVL TVAIIFGA READDW
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

TrEMBL top hitse value%identityAlignment
A0A0A0L1Y0 Uncharacterized protein9.7e-5675.32Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQ-----PTSDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS +DKSAAVGVVVHHHH E NS HPHYGTFQGVANYPP+GF H       P SD  DPSQ Q     YQ +PGYAI EG PVRE R  LPCCGIGIGWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQ-----PTSDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGFF A IPWYAGAI+I+CGR DYREKPGYVACSIAAV+ TVAIIFGA READ W
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

A0A1S3BUZ1 60S ribosomal protein L18a-like protein2.2e-5575.95Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS EDKSAAVGVVVHHHH E NS HPHYGTFQGVANYPP+ FP  QPT     SD  DPSQ Q     YQ +PGYAI EG PVRE    LPCCGIGIGWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGFF A IPWYAGAI+ILCGR DYREKPGYVACSIAAV+ T+AIIFGA READ W
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

A0A5D3D9U1 60S ribosomal protein L18a-like protein2.2e-5575.95Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS EDKSAAVGVVVHHHH E NS HPHYGTFQGVANYPP+ FP  QPT     SD  DPSQ Q     YQ +PGYAI EG PVRE    LPCCGIGIGWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGFF A IPWYAGAI+ILCGR DYREKPGYVACSIAAV+ T+AIIFGA READ W
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

A0A6J1C1R6 60S ribosomal protein L18a-like protein4.1e-5470.89Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQP-----TSDFYDPSQSQP----YQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS E+K+AA   VV HHH E NSGHP YGTFQGVANYPP+GFP  QP      SD YDPSQSQP    YQ +PGYAI EG PVRERR  LPCCGIGIGWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQP-----TSDFYDPSQSQP----YQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGFF  GIPWYAGAI+ILCGR DYREKPGYVAC+IAA+L T+A+I G  +  D W
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

A0A6J1INF5 60S ribosomal protein L18a-like protein1.6e-5072.15Show/hide
Query:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF
        MS EDKSAAVGVVVHHHH EPN GHPHYGTFQGVANYPP+GFP  QPT     SDF D SQ Q     YQ + GYAI EG PVRE R  LPCCGIG GWF
Subjt:  MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPT-----SDFYDPSQSQ----PYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWF

Query:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        LFIIGF      WY GAI+ILCGR  YREKPGYVACSIAAV+ TVAIIFGA + AD W
Subjt:  LFIIGFFFAGIPWYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein3.2e-2444.76Show/hide
Query:  HYGTFQGVANY-----PPLGFPHQQPTSDFYDPSQSQPYQPLPGYA----IAEGIP----------VRERRRH-LPCCGIGIGWFLFIIGFFFAGIPWYA
        +YGTFQGVAN+     PP     Q P + F        YQ L G+      A+G P          VR    H LPCCG+G+GWFLFI+GF F GIPWY 
Subjt:  HYGTFQGVANY-----PPLGFPHQQPTSDFYDPSQSQPYQPLPGYA----IAEGIP----------VRERRRH-LPCCGIGIGWFLFIIGFFFAGIPWYA

Query:  GAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        GA I+L    D+REK GYVACSIA+V+  +A++ G   + + W
Subjt:  GAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family2.9e-3653.52Show/hide
Query:  EPNSGHPHYGTFQGVANYPP-------LGFPHQQPTSDFYD---PSQSQPYQPLPGY-AIAEGIPVRERRRHLPCCGIGIGWFLFIIGFFFAGIPWYAGA
        E  + H  YGTFQGV+NYPP        GFP        YD   P  +  YQ +P +  +AEG PVR+RR  LPCCGIG+GWFLFI+GFF   IPWY G 
Subjt:  EPNSGHPHYGTFQGVANYPP-------LGFPHQQPTSDFYD---PSQSQPYQPLPGY-AIAEGIPVRERRRHLPCCGIGIGWFLFIIGFFFAGIPWYAGA

Query:  IIILCG-RFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
         I++ G R DYREKPGY+AC+IAA+L T+A+I G ++ ADDW
Subjt:  IIILCG-RFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

AT1G29970.1 60S ribosomal protein L18A-12.3e-2544.76Show/hide
Query:  HYGTFQGVANY-----PPLGFPHQQPTSDFYDPSQSQPYQPLPGYA----IAEGIP----------VRERRRH-LPCCGIGIGWFLFIIGFFFAGIPWYA
        +YGTFQGVAN+     PP     Q P + F        YQ L G+      A+G P          VR    H LPCCG+G+GWFLFI+GF F GIPWY 
Subjt:  HYGTFQGVANY-----PPLGFPHQQPTSDFYDPSQSQPYQPLPGYA----IAEGIP----------VRERRRH-LPCCGIGIGWFLFIIGFFFAGIPWYA

Query:  GAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        GA I+L    D+REK GYVACSIA+V+  +A++ G   + + W
Subjt:  GAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

AT1G29970.2 60S ribosomal protein L18A-14.1e-2248.39Show/hide
Query:  HYGTFQGVANY-----PPLGFPHQQPTSDFYDPSQSQPYQPLPGYA----IAEGIP----------VRERRRH-LPCCGIGIGWFLFIIGFFFAGIPWYA
        +YGTFQGVAN+     PP     Q P + F        YQ L G+      A+G P          VR    H LPCCG+G+GWFLFI+GF F GIPWY 
Subjt:  HYGTFQGVANY-----PPLGFPHQQPTSDFYDPSQSQPYQPLPGYA----IAEGIP----------VRERRRH-LPCCGIGIGWFLFIIGFFFAGIPWYA

Query:  GAIIILCGRFDYREKPGYVACSIA
        GA I+L    D+REK GYVACSIA
Subjt:  GAIIILCGRFDYREKPGYVACSIA

AT1G53560.1 Ribosomal protein L18ae family6.3e-3147.48Show/hide
Query:  YGTFQGVANYPPLGFPH--------------QQPTSDFYDPS---QSQPYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWFLFIIGFFFAGIPWYAGAII
        YGTFQGV  YPP  +PH                P S  +D S     Q +Q + GY +++G P R+ R  LPCCG+G+GWFLFIIGF    IPWY G  I
Subjt:  YGTFQGVANYPPLGFPH--------------QQPTSDFYDPS---QSQPYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWFLFIIGFFFAGIPWYAGAII

Query:  ILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        ++C R D REKPGYVAC+IAAV+ T+ I+FG       W
Subjt:  ILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW

AT3G14595.1 Ribosomal protein L18ae family3.3e-2445.21Show/hide
Query:  EDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPTSDFYDPSQSQPYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWFLFIIGFFFAGIP
        +DK+ +V V  H H Q+P         FQGV+NYP    P QQP +  Y P  +QPY    GY +  G+   E  R   CCGIGIGW LFI+GFFFA +P
Subjt:  EDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPTSDFYDPSQSQPYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWFLFIIGFFFAGIP

Query:  WYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW
        WY G  ++L  R + RE+PGY+AC++ AV  T+ +IFG  R +  W
Subjt:  WYAGAIIILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCGGAAGACAAATCCGCCGCCGTGGGAGTCGTCGTCCACCACCACCACCAGGAGCCCAATTCCGGCCACCCTCACTACGGAACCTTCCAAGGCGTCGCTAACTA
TCCTCCTCTCGGATTTCCCCACCAGCAGCCTACTTCCGATTTTTATGATCCCTCTCAATCTCAGCCCTACCAACCCCTCCCTGGATATGCTATCGCCGAAGGAATACCCG
TGAGAGAGCGGCGCCGGCACCTTCCTTGCTGTGGTATTGGCATTGGATGGTTCCTGTTCATTATTGGGTTCTTCTTTGCTGGTATCCCATGGTATGCTGGGGCAATTATT
ATACTATGTGGCAGGTTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTCTTGTCACAGTTGCAATTATTTTCGGTGCAGCAAGGGAAGCTGA
TGACTGGTAA
mRNA sequenceShow/hide mRNA sequence
GCCTTAAACTGTTTACTAAATTATAGGGACGAAAATGAATTTGAATTCACATGTCACATTCTGAATTTTGATACTATCTGCCCGTCGGAGAGAGGGAGAGAAAAGAGAAA
ATGAGCTCGGAAGACAAATCCGCCGCCGTGGGAGTCGTCGTCCACCACCACCACCAGGAGCCCAATTCCGGCCACCCTCACTACGGAACCTTCCAAGGCGTCGCTAACTA
TCCTCCTCTCGGATTTCCCCACCAGCAGCCTACTTCCGATTTTTATGATCCCTCTCAATCTCAGCCCTACCAACCCCTCCCTGGATATGCTATCGCCGAAGGAATACCCG
TGAGAGAGCGGCGCCGGCACCTTCCTTGCTGTGGTATTGGCATTGGATGGTTCCTGTTCATTATTGGGTTCTTCTTTGCTGGTATCCCATGGTATGCTGGGGCAATTATT
ATACTATGTGGCAGGTTTGACTACCGTGAGAAACCAGGATATGTTGCTTGCTCAATTGCTGCTGTTCTTGTCACAGTTGCAATTATTTTCGGTGCAGCAAGGGAAGCTGA
TGACTGGTAAATCAATCATCCTAAAGAAATTGCTTAGCGGGTGTTCCCCATGTTGTGCTTAAAAAAGTATAACATTGTGTAGAATCTGAAACTCATCTATCGGAATGTAC
TGATTCGGTAAATATATGTATTGTTTGGAATACTTTTTTTAATATCAAAACAGAAATCTGTTCTTCACCGATCAGACTTTTCTTCTAGCAAACATTCCCAGCCTGAAGAT
CTCGTTACTCACTTCATTGTAAGAAAGTTTTGGGGTTCATTGATGTGCATTTTTTTATACCTTTAAATAAATCAATTTCATCTTCCTCTA
Protein sequenceShow/hide protein sequence
MSSEDKSAAVGVVVHHHHQEPNSGHPHYGTFQGVANYPPLGFPHQQPTSDFYDPSQSQPYQPLPGYAIAEGIPVRERRRHLPCCGIGIGWFLFIIGFFFAGIPWYAGAII
ILCGRFDYREKPGYVACSIAAVLVTVAIIFGAAREADDW