CuGenDBv2

Gene ID	Sed0007692
Organism	Sechium edule (Chayote v1)
Description	Signal recognition particle 9 kDa protein
Genome location	LG05:456507..460015
RNA-Seq Expression	Sed0007692
Synteny	Sed0007692
Gene Ontology terms	GO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process) GO:0045900 - negative regulation of translational elongation (biological process) GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component) GO:0008312 - 7S RNA binding (molecular function)
InterPro domains	IPR009018 - Signal recognition particle, SRP9/SRP14 subunit IPR039914 - Signal recognition particle SRP9

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004154105.1 signal recognition particle 9 kDa protein [Cucumis sativus]

1.8e-23

77.22

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+NIKYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFF LMAR PD DISEVTGK+QVDAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

XP_022146059.1 signal recognition particle 9 kDa protein isoform X1 [Momordica charantia]

7.9e-24

78.48

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+NIKYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFF LMAR PD DISEVTGKEQVDAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

XP_022930934.1 signal recognition particle 9 kDa protein-like [Cucurbita moschata]

7.9e-24

78.48

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+NIKYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFFALMAR PD DISEVTGKEQ DAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

XP_022963515.1 signal recognition particle 9 kDa protein [Cucurbita moschata]

2.3e-23

75.95

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+N+KYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFF LMAR PD DISEVTGK+QVDAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

XP_038887366.1 signal recognition particle 9 kDa protein [Benincasa hispida]

3.9e-23

75.95

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+N+KYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFF LMAR PD DISEVTGK+QVDAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLU0 Signal recognition particle 9 kDa protein

8.5e-24

77.22

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+NIKYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFF LMAR PD DISEVTGK+QVDAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

A0A5D3E2L2 Signal recognition particle 9 kDa protein

8.5e-24

77.22

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+NIKYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFF LMAR PD DISEVTGK+QVDAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

A0A6J1CY87 Signal recognition particle 9 kDa protein

3.8e-24

78.48

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+NIKYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFF LMAR PD DISEVTGKEQVDAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

A0A6J1EY60 Signal recognition particle 9 kDa protein

3.8e-24

78.48

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+NIKYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFFALMAR PD DISEVTGKEQ DAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

A0A6J1K1A1 Signal recognition particle 9 kDa protein

3.8e-24

78.48

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+NIKYRHCDGKLVLKVT +   L  +  + +DAKKMEKLNNIFFALMAR PD DISEVTGKEQ DAQPTKKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

SwissProt top hits

e value

%identity

Alignment

O04438 Signal recognition particle 9 kDa protein

1.3e-21

67.09

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+ +KYRHC+GKLVLKVT D   L  +  + +DAKKMEKLNNIFFALM R PD DISEV+GKEQ + Q  KKGRGR+Q
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

Q55GL2 Signal recognition particle 9 kDa protein

2.5e-04

43.75

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Query:  TRHNIKYRHCDGKLVLKVTKDFV-LSSRLTRHRDAKKMEKLNNIFFAL
        TR + K+RH +GK+VLKVT D V L  +  +  D K+++++N++FF L
Subjt:  TRHNIKYRHCDGKLVLKVTKDFV-LSSRLTRHRDAKKMEKLNNIFFAL

Q9SMU7 Signal recognition particle 9 kDa protein

9.1e-23

68.35

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+ +KYRHCDGKLVLKVT +   L  +  + ++AKKMEKLNNIFF LMAR PD D+SEVTGKEQ++ QP KKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G49100.1 Signal recognition particle, SRP9/SRP14 subunit

6.4e-24

68.35

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Query:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ
        TR+ +KYRHCDGKLVLKVT +   L  +  + ++AKKMEKLNNIFF LMAR PD D+SEVTGKEQ++ QP KKGRGRKQ
Subjt:  TRHNIKYRHCDGKLVLKVTKD-FVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQ

Sequences

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CDS sequence

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ATGGAATTGAGTGTGGAAACGCGGCACAACATCAAGTATCGACACTGTGATGGAAAATTGGTTCTTAAGGTCACTAAGGACTTTGTCTTAAGTTCAAGACTGACCAGGCA
CAGAGACGCCAAGAAGATGGAAAAACTCAACAACATATTCTTCGCTCTGATGGCCCGAGACCCTGATGGGGATATATCGGAAGTGACGGGCAAAGAGCAGGTTGATGCAC
AGCCAACCAAGAAAGGAAGGGGGAGGAAGCAACGAATTCCCATTGACTATTGCAATAATAGGTTTCTCGTAGTTCTCTAA

mRNA sequence

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Protein sequence

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MELSVETRHNIKYRHCDGKLVLKVTKDFVLSSRLTRHRDAKKMEKLNNIFFALMARDPDGDISEVTGKEQVDAQPTKKGRGRKQRIPIDYCNNRFLVVL

Sed0007692 (gene) of Chayote v1 genome