; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0007731 (gene) of Chayote v1 genome

Gene IDSed0007731
OrganismSechium edule (Chayote v1)
DescriptionPhotosystem II reaction center Psb28 protein
Genome locationLG09:24499637..24501717
RNA-Seq ExpressionSed0007731
SyntenySed0007731
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009654 - photosystem II oxygen evolving complex (cellular component)
InterPro domainsIPR005610 - Photosystem II Psb28, class 1
IPR038676 - Photosystem II Psb28, class 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459971.1 PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic [Cucumis melo]5.7e-6487.16Show/hide
Query:  ASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ
        A SSFHGR+LSLST   C TL RR  R+R W  + MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F++PSVFDSS+EVGDITGFYMIDEEGVIQ
Subjt:  ASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ

Query:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Subjt:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

XP_011656766.1 photosystem II reaction center PSB28 protein, chloroplastic [Cucumis sativus]2.8e-6379.39Show/hide
Query:  LNENSHLPKL------CASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSE
        L+ +S  PKL       A SSFHGR+LSLST   C TL RR  R+R W  + MV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FE+PSVFDSS+E
Subjt:  LNENSHLPKL------CASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSE

Query:  VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QFVK
Subjt:  VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

XP_022157494.1 photosystem II reaction center Psb28 protein [Momordica charantia]4.1e-6283.78Show/hide
Query:  SSFHGRA----LSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ
        S+FHGR+    L+L +A+ C+TL    RRRR  +AMVQPKIQFIQGTDEQTVPDVRLTKSRDG+NGMAIF+FE+PSVFDSS+EVGDITGFYMIDEEGVIQ
Subjt:  SSFHGRA----LSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ

Query:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        SVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Subjt:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

XP_023005079.1 photosystem II reaction center PSB28 protein, chloroplastic-like [Cucurbita maxima]5.9e-6182.89Show/hide
Query:  ASSSFHGRALSLSTAANCETLNRR------RRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEE
        A S+F+GR+LS+S    C+TL RR      R R  + + MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF+EPSVFDSS+EVGDITGFYMIDEE
Subjt:  ASSSFHGRALSLSTAANCETLNRR------RRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEE

Query:  GVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        GVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Subjt:  GVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

XP_038875127.1 photosystem II reaction center Psb28 protein [Benincasa hispida]8.2e-6386.99Show/hide
Query:  ASSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSV
        A SSFHGR+LSLS A NC+TL  R  R    + MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F++PSVFDSS+EVGDITGFYMIDEEGVIQSV
Subjt:  ASSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSV

Query:  DVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        DVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Subjt:  DVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

TrEMBL top hitse value%identityAlignment
A0A0A0K9C2 Photosystem II reaction center Psb28 protein1.4e-6379.39Show/hide
Query:  LNENSHLPKL------CASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSE
        L+ +S  PKL       A SSFHGR+LSLST   C TL RR  R+R W  + MV PKIQFIQGTDEQT+PDVRLTKSRDGTNGMAIF+FE+PSVFDSS+E
Subjt:  LNENSHLPKL------CASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSE

Query:  VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        VGDITGFYMIDEEG+IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANG+QFVK
Subjt:  VGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

A0A1S3CCN2 Photosystem II reaction center Psb28 protein2.8e-6487.16Show/hide
Query:  ASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ
        A SSFHGR+LSLST   C TL RR  R+R W  + MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F++PSVFDSS+EVGDITGFYMIDEEGVIQ
Subjt:  ASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ

Query:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Subjt:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

A0A5A7TA18 Photosystem II reaction center Psb28 protein2.8e-6487.16Show/hide
Query:  ASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ
        A SSFHGR+LSLST   C TL RR  R+R W  + MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIF+F++PSVFDSS+EVGDITGFYMIDEEGVIQ
Subjt:  ASSSFHGRALSLSTAANCETLNRRRRRRRLW--VAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ

Query:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Subjt:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

A0A6J1DWM5 Photosystem II reaction center Psb28 protein2.0e-6283.78Show/hide
Query:  SSFHGRA----LSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ
        S+FHGR+    L+L +A+ C+TL    RRRR  +AMVQPKIQFIQGTDEQTVPDVRLTKSRDG+NGMAIF+FE+PSVFDSS+EVGDITGFYMIDEEGVIQ
Subjt:  SSFHGRA----LSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQ

Query:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        SVDVNAKF+NGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Subjt:  SVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

A0A6J1KY50 Photosystem II reaction center Psb28 protein2.9e-6182.89Show/hide
Query:  ASSSFHGRALSLSTAANCETLNRR------RRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEE
        A S+F+GR+LS+S    C+TL RR      R R  + + MVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKF+EPSVFDSS+EVGDITGFYMIDEE
Subjt:  ASSSFHGRALSLSTAANCETLNRR------RRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEE

Query:  GVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        GVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
Subjt:  GVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

SwissProt top hitse value%identityAlignment
A0T0H5 Photosystem II reaction center Psb28 protein2.9e-3455.75Show/hide
Query:  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFD-SSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFM
        ++ KIQFI+G DE+ +PDVRLT+S+DG+ G A F+F+ P++ D ++++ G+ITG Y+IDEEG++++ DVNA+F+NGKP  IE+ Y+M++P  WDRFMRFM
Subjt:  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFD-SSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFM

Query:  ERYSNANGLQFVK
        ERY   NGL F K
Subjt:  ERYSNANGLQFVK

P49508 Photosystem II reaction center Psb28 protein1.3e-3457.52Show/hide
Query:  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFD-SSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFM
        ++ KIQFI+G DE+ +PDVRLT+SRDG+ G A F+F+ P++ D S+++ G+ITG Y+ID+EG +++ DVNA+FINGKP  IE+ Y+M++P  WDRFMRFM
Subjt:  VQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFD-SSSEVGDITGFYMIDEEGVIQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFM

Query:  ERYSNANGLQFVK
        ERY  +NGL F K
Subjt:  ERYSNANGLQFVK

Q00UI6 Photosystem II reaction center psb28 protein, chloroplastic2.9e-3452.17Show/hide
Query:  ALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFIN
        AL+ S  A+ +  ++  RR  +  A     IQF++G +E  VP+VRLT+S+DG+NG A F F +P VF++    GDITG ++ DEEG + +VDVNAKF+N
Subjt:  ALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVDVNAKFIN

Query:  GKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        GKP GIEA+YVM+T  +W+RFMRFMERY+  NGL F K
Subjt:  GKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

Q0JG75 Photosystem II reaction center PSB28 protein, chloroplastic1.0e-5270Show/hide
Query:  PKLCASSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGV
        P     SSF G +L         +L+R R   ++ +   +P IQFIQGTDEQT+PDVRLTKSRDGTNG+AIF F++PSVFDSS+E+GDITGFYMID+EGV
Subjt:  PKLCASSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGV

Query:  IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        +QSVDV+AKF+NGKPA IEAKYVMRTPREWDRFMRFMERYS ANGLQFVK
Subjt:  IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

Q8W0Y8 Photosystem II reaction center PSB28 protein, chloroplastic1.8e-4966.21Show/hide
Query:  SSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVD
        SSSF G  +SL  A        R  +      MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F++PSVFDSS EVG+ITG YMIDEEGVIQS D
Subjt:  SSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVD

Query:  VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        VNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQFVK
Subjt:  VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

Arabidopsis top hitse value%identityAlignment
AT4G28660.1 photosystem II reaction center PSB28 protein1.3e-5066.21Show/hide
Query:  SSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVD
        SSSF G  +SL  A        R  +      MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F++PSVFDSS EVG+ITG YMIDEEGVIQS D
Subjt:  SSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVD

Query:  VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        VNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQFVK
Subjt:  VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK

AT4G28660.2 photosystem II reaction center PSB28 protein1.3e-5066.21Show/hide
Query:  SSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVD
        SSSF G  +SL  A        R  +      MV+P +QFIQGTDE T+PDV+LT+SRDG+NGMA+F F++PSVFDSS EVG+ITG YMIDEEGVIQS D
Subjt:  SSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGVIQSVD

Query:  VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK
        VNA+F+NGKP GI AK++MR+P+EWDRFMRFMERYS+ NGLQFVK
Subjt:  VNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCCTTAAATGAAAATTCTCATCTTCCCAAGTTGTGCGCCTCCTCCTCCTTCCACGGCCGTGCTCTCTCCCTCTCCACCGCCGCAAACTGCGAGACGCTGAACCG
GCGGCGGCGGAGGAGGAGGCTGTGGGTCGCGATGGTCCAGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGCGGCTGACGAAGTCGCGAG
ACGGCACGAACGGGATGGCGATCTTCAAGTTCGAGGAGCCGTCGGTGTTCGACTCCTCGAGCGAGGTCGGGGACATCACCGGGTTCTACATGATCGACGAGGAAGGCGTG
ATCCAGTCGGTGGACGTGAATGCGAAGTTCATCAATGGAAAGCCGGCGGGGATTGAGGCCAAGTACGTGATGCGGACTCCAAGGGAGTGGGACAGGTTCATGAGGTTCAT
GGAGCGGTACTCCAACGCCAATGGCTTGCAATTCGTCAAGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATCCTTAAATGAAAATTCTCATCTTCCCAAGTTGTGCGCCTCCTCCTCCTTCCACGGCCGTGCTCTCTCCCTCTCCACCGCCGCAAACTGCGAGACGCTGAACCG
GCGGCGGCGGAGGAGGAGGCTGTGGGTCGCGATGGTCCAGCCGAAGATCCAGTTCATCCAGGGCACGGACGAGCAGACGGTGCCGGACGTGCGGCTGACGAAGTCGCGAG
ACGGCACGAACGGGATGGCGATCTTCAAGTTCGAGGAGCCGTCGGTGTTCGACTCCTCGAGCGAGGTCGGGGACATCACCGGGTTCTACATGATCGACGAGGAAGGCGTG
ATCCAGTCGGTGGACGTGAATGCGAAGTTCATCAATGGAAAGCCGGCGGGGATTGAGGCCAAGTACGTGATGCGGACTCCAAGGGAGTGGGACAGGTTCATGAGGTTCAT
GGAGCGGTACTCCAACGCCAATGGCTTGCAATTCGTCAAGACATGA
Protein sequenceShow/hide protein sequence
MGSLNENSHLPKLCASSSFHGRALSLSTAANCETLNRRRRRRRLWVAMVQPKIQFIQGTDEQTVPDVRLTKSRDGTNGMAIFKFEEPSVFDSSSEVGDITGFYMIDEEGV
IQSVDVNAKFINGKPAGIEAKYVMRTPREWDRFMRFMERYSNANGLQFVKT