; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0007752 (gene) of Chayote v1 genome

Gene IDSed0007752
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG12:10571729..10573960
RNA-Seq ExpressionSed0007752
SyntenySed0007752
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY19851.1 Zinc finger, CCHC-type-like protein [Theobroma cacao]1.8e-0849.23Show/hide
Query:  RGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGE
        R KF+R+K L+D+  PLRR L L  E     KW+ L YE LP+FC  CGR+GH+  NC+Y  + E
Subjt:  RGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGE

OQU92454.1 hypothetical protein SORBI_3001G347001 [Sorghum bicolor]1.4e-0838.21Show/hide
Query:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGE
        IG  +  D E D    G FLR+K  IDIR PL R + L+        W  + YE LP FC GCG +GH+   C   V  E     FG+ LR   + ++G+
Subjt:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGE

Query:  KPLIQR--QGGQGRGG--GRGRE
            QR  +GG    G  GR RE
Subjt:  KPLIQR--QGGQGRGG--GRGRE

TVU42476.1 hypothetical protein EJB05_08883, partial [Eragrostis curvula]1.8e-0843.84Show/hide
Query:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNC
        IG+ IG   E D+ + G FLR+K  +DIR+P+ R + L+ +     +W  L YE LPEFC  CG +GH+  NC
Subjt:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNC

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]8.7e-1131.39Show/hide
Query:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELR--EPTSHFR
        +GEF+  D E D+   G+FLRVK  I+I  PLRR + +     A ++W  ++YE LP+FC  CGR+GH    C    +  G   PFG ELR   P   F 
Subjt:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELR--EPTSHFR

Query:  GEKPLIQ--------RQGG-----QGRGGGRGREEDVRAEN-SWCGEDLAEEEAVAAPAREERQFPMDLERRMAGNDYSGAASRARDSKGQIQSEGFAEF
        GE    Q        R GG      G  GGRG     R++  SW  +D+ E+ +      EE   P  ++          A     D+  ++  +     
Subjt:  GEKPLIQ--------RQGG-----QGRGGGRGREEDVRAEN-SWCGEDLAEEEAVAAPAREERQFPMDLERRMAGNDYSGAASRARDSKGQIQSEGFAEF

Query:  GGKSGTELEDGIIRRENREKFGG
         G SG   E G   ++N+E   G
Subjt:  GGKSGTELEDGIIRRENREKFGG

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]1.1e-1028.76Show/hide
Query:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELR--EPTSHFR
        +GEF+  D E D    G+FLRVK  I+I  PLRR + +     A ++W  ++YE LP+FC  CGR+GH    C   +  E    PFG ELR   P   F 
Subjt:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELR--EPTSHFR

Query:  GEKPLIQ--------RQGG-----QGRGGGRGREEDVRAEN-SWCGEDLAE-------EEAVAAPAR-----------EERQFPMDLERRMAGNDYSGAA
        GE    Q        R GG      G  GGRG     R++  SW  +D+ E       EE V +P++           + ++   D    M+ ++   AA
Subjt:  GEKPLIQ--------RQGG-----QGRGGGRGREEDVRAEN-SWCGEDLAE-------EEAVAAPAR-----------EERQFPMDLERRMAGNDYSGAA

Query:  --SRARDSKGQIQSEGFA------EFGGKSGTELEDGIIRRENREKFGGNKGHVAEDDKVVTNEKGKSKVLMEGRNELLFGPFDIHIKTHDGFDFKKSEH
          S  R+ KGQ   E  A      E    S  +LE    R     +    K          ++E+  + V+M  RN +     D+  ++  G    ++EH
Subjt:  --SRARDSKGQIQSEGFA------EFGGKSGTELEDGIIRRENREKFGGNKGHVAEDDKVVTNEKGKSKVLMEGRNELLFGPFDIHIKTHDGFDFKKSEH

Query:  GQAKGI
         +  G+
Subjt:  GQAKGI

TrEMBL top hitse value%identityAlignment
A0A061FRZ1 Zinc finger, CCHC-type-like protein8.7e-0949.23Show/hide
Query:  RGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGE
        R KF+R+K L+D+  PLRR L L  E     KW+ L YE LP+FC  CGR+GH+  NC+Y  + E
Subjt:  RGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGE

A0A1Z5S941 CCHC-type domain-containing protein6.7e-0938.21Show/hide
Query:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGE
        IG  +  D E D    G FLR+K  IDIR PL R + L+        W  + YE LP FC GCG +GH+   C   V  E     FG+ LR   + ++G+
Subjt:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGE

Query:  KPLIQR--QGGQGRGG--GRGRE
            QR  +GG    G  GR RE
Subjt:  KPLIQR--QGGQGRGG--GRGRE

A0A2T7EQ43 CCHC-type domain-containing protein1.1e-0836.8Show/hide
Query:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGE
        +GEF+  + E D+   G+FL +KA +DIR PL R   L         W  L YE LP+FC  CGR+GHL   C  VV+ +G    F ++L       R +
Subjt:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGE

Query:  KPLIQRQGG---------QGRGGGR
             R GG          GRG GR
Subjt:  KPLIQRQGG---------QGRGGGR

A0A5J9W3H8 Uncharacterized protein (Fragment)8.7e-0943.84Show/hide
Query:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNC
        IG+ IG   E D+ + G FLR+K  +DIR+P+ R + L+ +     +W  L YE LPEFC  CG +GH+  NC
Subjt:  IGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNC

A0A803LAB8 Uncharacterized protein1.0e-0938.26Show/hide
Query:  IGEFIGWDYEGDQRNR---GKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSY----VVIGEGIPFPFGEELR-E
        IG+F+G   E D  +    G+FLR+K +IDI  PLRR L L +   +  KWV L YE+L EFC  CGR+ H  M CS+      +   I + +G  LR  
Subjt:  IGEFIGWDYEGDQRNR---GKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSY----VVIGEGIPFPFGEELR-E

Query:  PTSHFRGEKPLIQRQ
        P    R  +  I+++
Subjt:  PTSHFRGEKPLIQRQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGGCGAATTTATTGGATGGGACTATGAAGGGGATCAAAGAAATAGGGGAAAATTTCTGAGAGTAAAGGCGTTGATTGACATTCGTTTACCTTTGAGAAGAGCCTT
GAAATTGAAGAGCGAGTCTATGGCTCCTAAGAAATGGGTGCGTTTATCCTATGAAAAACTGCCTGAGTTCTGTCGAGGTTGTGGAAGAGTCGGCCATTTAGCGATGAATT
GCAGTTATGTGGTCATTGGTGAGGGTATCCCATTTCCTTTTGGAGAGGAGTTGAGAGAACCAACAAGCCATTTTAGGGGAGAAAAACCTTTAATTCAGAGACAAGGAGGA
CAAGGAAGAGGTGGCGGAAGAGGTCGAGAAGAAGATGTTCGAGCAGAAAACTCATGGTGTGGAGAAGATCTTGCAGAGGAAGAGGCTGTTGCTGCACCAGCAAGGGAGGA
GAGGCAGTTTCCGATGGATCTTGAGCGGAGAATGGCCGGAAACGACTACTCGGGTGCTGCCTCGAGAGCTCGCGATTCGAAAGGTCAAATTCAATCTGAGGGCTTTGCAG
AATTTGGGGGCAAGTCAGGTACGGAACTGGAAGATGGTATTATCAGAAGGGAAAATCGTGAAAAATTTGGAGGAAATAAGGGACACGTGGCGGAGGATGATAAGGTCGTA
ACTAATGAAAAGGGGAAAAGTAAAGTTCTTATGGAAGGGAGGAATGAATTACTATTTGGCCCTTTTGATATTCATATAAAAACCCATGATGGATTTGATTTTAAAAAGTC
AGAGCATGGGCAAGCTAAAGGAATTAAAATAAAAGAGGTGGGGCCTGATGCTTTCAATTTAAATAAAGAGTTTAAAGGGAATTTTAAAATTCCTTTAGTTCATGTTGAGC
CAGATTTTAAGTGTTTTAATGGGCCACTTTTTAAAGTGACTTTGGAGGAGAATGAAAATCCTTTTGTTCCTCAACAAAAAATTATGTCTTCTGCTGCAGAAAAGTTGATT
GATTTTGAATTTGATCCAAAAAAATTAGCTTCCAAAAATAATAAAAGGTTTGTTATTAGAGATGATGAGGGACTATTAAAAATGGAAAAATCTTTAAGGAAAAATAAGGA
ATTGGATTATGAAGGAGAGGAGAGTGGTGGGAAGAAAGAATGTGAGAAGCTTTCAGTAATCAAATGGAAGAGACGTGCTCGGCAAGGAGAGAGGCATTTAGAATCTTCAA
CTAATTGTGTATTGAAAAAGGAAGATGGGCTAATTGGAAAAAAACATGATATCGCAGAGGATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAGGCGAATTTATTGGATGGGACTATGAAGGGGATCAAAGAAATAGGGGAAAATTTCTGAGAGTAAAGGCGTTGATTGACATTCGTTTACCTTTGAGAAGAGCCTT
GAAATTGAAGAGCGAGTCTATGGCTCCTAAGAAATGGGTGCGTTTATCCTATGAAAAACTGCCTGAGTTCTGTCGAGGTTGTGGAAGAGTCGGCCATTTAGCGATGAATT
GCAGTTATGTGGTCATTGGTGAGGGTATCCCATTTCCTTTTGGAGAGGAGTTGAGAGAACCAACAAGCCATTTTAGGGGAGAAAAACCTTTAATTCAGAGACAAGGAGGA
CAAGGAAGAGGTGGCGGAAGAGGTCGAGAAGAAGATGTTCGAGCAGAAAACTCATGGTGTGGAGAAGATCTTGCAGAGGAAGAGGCTGTTGCTGCACCAGCAAGGGAGGA
GAGGCAGTTTCCGATGGATCTTGAGCGGAGAATGGCCGGAAACGACTACTCGGGTGCTGCCTCGAGAGCTCGCGATTCGAAAGGTCAAATTCAATCTGAGGGCTTTGCAG
AATTTGGGGGCAAGTCAGGTACGGAACTGGAAGATGGTATTATCAGAAGGGAAAATCGTGAAAAATTTGGAGGAAATAAGGGACACGTGGCGGAGGATGATAAGGTCGTA
ACTAATGAAAAGGGGAAAAGTAAAGTTCTTATGGAAGGGAGGAATGAATTACTATTTGGCCCTTTTGATATTCATATAAAAACCCATGATGGATTTGATTTTAAAAAGTC
AGAGCATGGGCAAGCTAAAGGAATTAAAATAAAAGAGGTGGGGCCTGATGCTTTCAATTTAAATAAAGAGTTTAAAGGGAATTTTAAAATTCCTTTAGTTCATGTTGAGC
CAGATTTTAAGTGTTTTAATGGGCCACTTTTTAAAGTGACTTTGGAGGAGAATGAAAATCCTTTTGTTCCTCAACAAAAAATTATGTCTTCTGCTGCAGAAAAGTTGATT
GATTTTGAATTTGATCCAAAAAAATTAGCTTCCAAAAATAATAAAAGGTTTGTTATTAGAGATGATGAGGGACTATTAAAAATGGAAAAATCTTTAAGGAAAAATAAGGA
ATTGGATTATGAAGGAGAGGAGAGTGGTGGGAAGAAAGAATGTGAGAAGCTTTCAGTAATCAAATGGAAGAGACGTGCTCGGCAAGGAGAGAGGCATTTAGAATCTTCAA
CTAATTGTGTATTGAAAAAGGAAGATGGGCTAATTGGAAAAAAACATGATATCGCAGAGGATGCTTAA
Protein sequenceShow/hide protein sequence
MIGEFIGWDYEGDQRNRGKFLRVKALIDIRLPLRRALKLKSESMAPKKWVRLSYEKLPEFCRGCGRVGHLAMNCSYVVIGEGIPFPFGEELREPTSHFRGEKPLIQRQGG
QGRGGGRGREEDVRAENSWCGEDLAEEEAVAAPAREERQFPMDLERRMAGNDYSGAASRARDSKGQIQSEGFAEFGGKSGTELEDGIIRRENREKFGGNKGHVAEDDKVV
TNEKGKSKVLMEGRNELLFGPFDIHIKTHDGFDFKKSEHGQAKGIKIKEVGPDAFNLNKEFKGNFKIPLVHVEPDFKCFNGPLFKVTLEENENPFVPQQKIMSSAAEKLI
DFEFDPKKLASKNNKRFVIRDDEGLLKMEKSLRKNKELDYEGEESGGKKECEKLSVIKWKRRARQGERHLESSTNCVLKKEDGLIGKKHDIAEDA