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Sed0007807 (gene) of Chayote v1 genome

Gene IDSed0007807
OrganismSechium edule (Chayote v1)
DescriptionTFIIIC_sub6 domain-containing protein
Genome locationLG11:35881030..35882916
RNA-Seq ExpressionSed0007807
SyntenySed0007807
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0000127 - transcription factor TFIIIC complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR019481 - Transcription factor TFIIIC, triple barrel domain
IPR042771 - TFIIIC subunit GTF3C6-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022133708.1 uncharacterized protein LOC111006225 [Momordica charantia]8.7e-4478.63Show/hide
Query:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMV--EEEARSSTTNRPAAETVEPKP
        MEKTTI    DGEE+YVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTF EEEVS+V  EEEA  S T    AE V P  
Subjt:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMV--EEEARSSTTNRPAAETVEPKP

Query:  ASRKELKPIAAVHKILKFKLLLNSSVPNSTS
        A RKELKPIA+VHKILKFKLL +S+VPNSTS
Subjt:  ASRKELKPIAAVHKILKFKLLLNSSVPNSTS

XP_022939121.1 uncharacterized protein LOC111445121, partial [Cucurbita moschata]1.5e-4374.63Show/hide
Query:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS
        MEK  I    DGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTF EEEVSMVEEEA  S TNR + + VEP  A 
Subjt:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS

Query:  RKELKPIAAVHKILKFKLL-----LNSSVPNSTS
        R++LKP+A+VHKILKFKLL     ++S+VP+STS
Subjt:  RKELKPIAAVHKILKFKLL-----LNSSVPNSTS

XP_022993830.1 uncharacterized protein LOC111489725 [Cucurbita maxima]3.9e-4477.1Show/hide
Query:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS
        MEK  I    DGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTF EEEVSMVEEEA  S TNR + + VEP  A 
Subjt:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS

Query:  RKELKPIAAVHKILKFKLL--LNSSVPNSTS
        RK+LKP+A+VHKILKFKLL  ++S+VP+STS
Subjt:  RKELKPIAAVHKILKFKLL--LNSSVPNSTS

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]3.9e-4476.12Show/hide
Query:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS
        MEK  I    DGEEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTF EEEVSMVEEEA  S TNR + + VEP  A 
Subjt:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS

Query:  RKELKPIAAVHKILKFKLL-----LNSSVPNSTS
        RK+LKP+A+VHKILKFKLL     ++S+VP+STS
Subjt:  RKELKPIAAVHKILKFKLL-----LNSSVPNSTS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]5.1e-4478.29Show/hide
Query:  MEKTTIDG----EEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS
        MEK TID     EEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTF EEEV +VEEEA  S +NR + E  EPK A 
Subjt:  MEKTTIDG----EEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS

Query:  RKELKPIAAVHKILKFKLLLNSSVPNSTS
        RKELKP+A+VHKILKFK LL+S+VPNS S
Subjt:  RKELKPIAAVHKILKFKLLLNSSVPNSTS

TrEMBL top hitse value%identityAlignment
A0A0A0LML8 TFIIIC_sub6 domain-containing protein5.7e-4175.19Show/hide
Query:  MEKTTIDG----EEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS
        MEK TID     EEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTF EEEV +VEEEA+ S T R + E VEP+ A+
Subjt:  MEKTTIDG----EEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS

Query:  RKELKPIAAVHKILKFKLLLNSSVPNSTS
        +KELK +A VHKILKFK LL+S VP+S S
Subjt:  RKELKPIAAVHKILKFKLLLNSSVPNSTS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like7.4e-4175.19Show/hide
Query:  MEKTTID----GEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS
        MEK TID     EEEYVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTF EEEV +VEEEA+ S TN  + E  EPK A+
Subjt:  MEKTTID----GEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS

Query:  RKELKPIAAVHKILKFKLLLNSSVPNSTS
        RKELK  A VHKILKFK LL+S VP+  S
Subjt:  RKELKPIAAVHKILKFKLLLNSSVPNSTS

A0A6J1BZW5 uncharacterized protein LOC1110062254.2e-4478.63Show/hide
Query:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMV--EEEARSSTTNRPAAETVEPKP
        MEKTTI    DGEE+YVLLDLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKM+GEYEETIGTCLTF EEEVS+V  EEEA  S T    AE V P  
Subjt:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMV--EEEARSSTTNRPAAETVEPKP

Query:  ASRKELKPIAAVHKILKFKLLLNSSVPNSTS
        A RKELKPIA+VHKILKFKLL +S+VPNSTS
Subjt:  ASRKELKPIAAVHKILKFKLLLNSSVPNSTS

A0A6J1FF13 uncharacterized protein LOC1114451217.2e-4474.63Show/hide
Query:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS
        MEK  I    DGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTF EEEVSMVEEEA  S TNR + + VEP  A 
Subjt:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS

Query:  RKELKPIAAVHKILKFKLL-----LNSSVPNSTS
        R++LKP+A+VHKILKFKLL     ++S+VP+STS
Subjt:  RKELKPIAAVHKILKFKLL-----LNSSVPNSTS

A0A6J1JTZ1 uncharacterized protein LOC1114897251.9e-4477.1Show/hide
Query:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS
        MEK  I    DGEEEYVL+DLGD+SLLDIPPNAPYVLSGLDTMNP+LTICDKIKMIGEYEETIGTCLTF EEEVSMVEEEA  S TNR + + VEP  A 
Subjt:  MEKTTI----DGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPAS

Query:  RKELKPIAAVHKILKFKLL--LNSSVPNSTS
        RK+LKP+A+VHKILKFKLL  ++S+VP+STS
Subjt:  RKELKPIAAVHKILKFKLL--LNSSVPNSTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80745.1 Transcription factor TFIIIC, tau55-related protein4.3e-1745.79Show/hide
Query:  EEEYVLLDLGDLSL-LDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPASRKELKPIAAVH
        E+E+V++DL D+S  +DIP +APY LSGLDT+NP+LTI  K+K++GEY  TIGTCL F ++                P  +TVE          P+A +H
Subjt:  EEEYVLLDLGDLSL-LDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPASRKELKPIAAVH

Query:  KILKFKL
        KILKF+L
Subjt:  KILKFKL

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein2.7e-1948.6Show/hide
Query:  EEEYVLLDLGDLSL-LDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPASRKELKPIAAVH
        EEE+V++DL ++S  ++IP +APY LSGLDT+NP+LTI  KIK++GEY ETIGTCL F E      +EE  +S    P           +K ++P+A +H
Subjt:  EEEYVLLDLGDLSL-LDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPASRKELKPIAAVH

Query:  KILKFKL
        KILKF+L
Subjt:  KILKFKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAACTACAATTGATGGCGAGGAAGAATATGTATTGCTTGATCTTGGTGATTTATCGCTACTTGACATTCCACCCAATGCTCCATACGTTCTATCCGGTTTGGA
CACCATGAATCCACTGTTGACTATATGTGATAAAATTAAGATGATCGGAGAATATGAAGAAACAATAGGCACATGTCTTACCTTTGGGGAAGAGGAAGTCTCCATGGTTG
AAGAAGAAGCTAGGTCATCTACAACTAATCGTCCTGCTGCCGAAACAGTTGAACCAAAACCAGCTTCAAGGAAGGAGTTGAAACCCATTGCTGCAGTACACAAGATTCTT
AAATTTAAATTGTTGCTTAATTCTTCTGTTCCAAACTCTACATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAACTACAATTGATGGCGAGGAAGAATATGTATTGCTTGATCTTGGTGATTTATCGCTACTTGACATTCCACCCAATGCTCCATACGTTCTATCCGGTTTGGA
CACCATGAATCCACTGTTGACTATATGTGATAAAATTAAGATGATCGGAGAATATGAAGAAACAATAGGCACATGTCTTACCTTTGGGGAAGAGGAAGTCTCCATGGTTG
AAGAAGAAGCTAGGTCATCTACAACTAATCGTCCTGCTGCCGAAACAGTTGAACCAAAACCAGCTTCAAGGAAGGAGTTGAAACCCATTGCTGCAGTACACAAGATTCTT
AAATTTAAATTGTTGCTTAATTCTTCTGTTCCAAACTCTACATCTTAG
Protein sequenceShow/hide protein sequence
MEKTTIDGEEEYVLLDLGDLSLLDIPPNAPYVLSGLDTMNPLLTICDKIKMIGEYEETIGTCLTFGEEEVSMVEEEARSSTTNRPAAETVEPKPASRKELKPIAAVHKIL
KFKLLLNSSVPNSTS