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Sed0007850 (gene) of Chayote v1 genome

Gene IDSed0007850
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationLG02:46580016..46584869
RNA-Seq ExpressionSed0007850
SyntenySed0007850
Gene Ontology termsGO:0006386 - termination of RNA polymerase III transcription (biological process)
GO:0042779 - tRNA 3'-trailer cleavage (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR034014 - Pol III subunit C11, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597716.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia]1.7e-5187.39Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DDMKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NE+CR  WRED
Subjt:  NENCRIIWRED

KAG7029162.1 DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-5187.39Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DDMKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NE+CR  WRED
Subjt:  NENCRIIWRED

XP_004141147.1 DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus]3.4e-5288.29Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DDMKNAAQTEATCP CAFGKAAF+QIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NENCR  WRED
Subjt:  NENCRIIWRED

XP_022932603.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata]1.7e-5187.39Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DDMKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NE+CR  WRED
Subjt:  NENCRIIWRED

XP_038903069.1 DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida]3.4e-5288.29Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DDMKNAAQTEATCP CAFGKAAF+QIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NENCR  WRED
Subjt:  NENCRIIWRED

TrEMBL top hitse value%identityAlignment
A0A0A0LCM4 DNA-directed RNA polymerase subunit1.7e-5288.29Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DDMKNAAQTEATCP CAFGKAAF+QIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NENCR  WRED
Subjt:  NENCRIIWRED

A0A1S3CQ50 DNA-directed RNA polymerase subunit1.7e-5288.29Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DDMKNAAQTEATCP CAFGKAAF+QIQLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NENCR  WRED
Subjt:  NENCRIIWRED

A0A6J1DGL3 DNA-directed RNA polymerase subunit1.8e-5185.59Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV +LENRVKIKRKQHL KKELEPII ++DMKNAAQTEATCP CAFGKAAF+Q+QLRSADEPA+TFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NE+CRI WRED
Subjt:  NENCRIIWRED

A0A6J1EXG3 DNA-directed RNA polymerase subunit8.3e-5287.39Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DDMKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NE+CR  WRED
Subjt:  NENCRIIWRED

A0A6J1IB59 DNA-directed RNA polymerase subunit8.3e-5287.39Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGNMLQFELP+MGK+ RFFC TCPYV+YLENRVKIKRKQHL KKELEPII +DDMKNAAQTEATCP C FGKAAF+QIQLRSADEPASTFYKCM
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
        NE+CR  WRED
Subjt:  NENCRIIWRED

SwissProt top hitse value%identityAlignment
O13896 DNA-directed RNA polymerase III subunit RPC106.0e-1539.47Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPII-CEDDMKNAAQTEATC--PKCAFGKAAFMQIQLRSADEPASTFY
        M+FCPTCGN L   +   G+   F C TCPY  +      +  +    +KE++ ++  E+  ++  QTE TC   KC   +A F Q+Q+RSADEP STFY
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPII-CEDDMKNAAQTEATC--PKCAFGKAAFMQIQLRSADEPASTFY

Query:  KCMNENCRIIWRED
        +C    C+  WRE+
Subjt:  KCMNENCRIIWRED

Q04307 DNA-directed RNA polymerase III subunit RPC107.3e-1336.84Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPK---CAFGKAAFMQIQLRSADEPASTFY
        + FCP+C NML       G      C +CPY   +E  ++I  ++ L +KE++ ++      N  QT+  CP    C    A F Q+Q+RSADEP +TFY
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPK---CAFGKAAFMQIQLRSADEPASTFY

Query:  KCMNENCRIIWRED
        KC+  NC   W+E+
Subjt:  KCMNENCRIIWRED

Q2M2S7 DNA-directed RNA polymerase III subunit RPC102.7e-1543.12Show/hide
Query:  FCPTCGNMLQFELPHMGKAC-RFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMN
        FCP CGN L  E    G+ C RF C+TCPYV  +  +V   RK    K+  + +      +N   T   CPKC   +A FMQ+Q R ADEP +TFYKC N
Subjt:  FCPTCGNMLQFELPHMGKAC-RFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMN

Query:  ENCRIIWRE
          C   WR+
Subjt:  ENCRIIWRE

Q9CQZ7 DNA-directed RNA polymerase III subunit RPC101.1e-1642.73Show/hide
Query:  FCPTCGNMLQFELPHMGKAC-RFFCSTCPYVAYLENRVKIKRKQHLDKKELEPII-CEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        FCP CGN L  E    G+ C RF C+TCPYV  +    K+  +++   KE++ ++      +N   T   CPKC   +A FMQ+Q RSADEP +TFYKC 
Subjt:  FCPTCGNMLQFELPHMGKAC-RFFCSTCPYVAYLENRVKIKRKQHLDKKELEPII-CEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRE
        N  C   WR+
Subjt:  NENCRIIWRE

Q9Y2Y1 DNA-directed RNA polymerase III subunit RPC106.4e-1742.73Show/hide
Query:  FCPTCGNMLQFELPHMGKAC-RFFCSTCPYVAYLENRVKIKRKQHLDKKELEPII-CEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        FCP CGN L  E    G+ C RF C+TCPYV  +    K+  +++   KE++ ++      +N   T  +CPKC   +A FMQ+Q RSADEP +TFYKC 
Subjt:  FCPTCGNMLQFELPHMGKAC-RFFCSTCPYVAYLENRVKIKRKQHLDKKELEPII-CEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRE
        N  C   WR+
Subjt:  NENCRIIWRE

Arabidopsis top hitse value%identityAlignment
AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal1.5e-3254.95Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGN+L++E    G   RFFCSTCPYVAY++ +V+IK+KQ L KK +E ++ +DD+  AA+TEA CP+C   KA F  +Q+RSADEP S FY+C+
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
           C   WRE+
Subjt:  NENCRIIWRED

AT2G38560.1 transcript elongation factor IIS1.7e-0435.53Show/hide
Query:  ENRVKIKRKQHLDK-KELEPIICEDDMKNAAQTEA-TCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWR
        E+    KRKQ  ++ KE     CE  +   A T+   C +C   K  + Q+Q RSADEP +T+  C+  NC   W+
Subjt:  ENRVKIKRKQHLDK-KELEPIICEDDMKNAAQTEA-TCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWR

AT4G07950.1 DNA-directed RNA polymerase, subunit M, archaeal1.3e-3356.76Show/hide
Query:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM
        MEFCPTCGN+L++E    G + RFFCSTCPYVA +E RV+IK+KQ L KK +EP++ +DD+  AA+TEA CP+C   KA F  +Q+RSADEP S FY+C+
Subjt:  MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCM

Query:  NENCRIIWRED
           C   WRE+
Subjt:  NENCRIIWRED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTTTGCCCAACTTGTGGGAATATGCTGCAATTTGAGTTGCCCCATATGGGTAAAGCTTGTAGATTCTTTTGCTCGACTTGTCCATATGTGGCTTACTTGGAGAA
TAGGGTTAAGATCAAGAGAAAGCAGCATTTGGATAAAAAGGAATTAGAACCCATAATCTGTGAGGACGATATGAAAAATGCAGCTCAAACTGAAGCAACATGTCCAAAGT
GTGCGTTTGGCAAGGCTGCTTTTATGCAAATACAATTGAGATCAGCCGATGAACCTGCTTCAACATTTTATAAGTGCATGAACGAAAACTGCCGTATAATTTGGCGTGAG
GATTAA
mRNA sequenceShow/hide mRNA sequence
GCACTTTCTATTTTCTTCACAAAAAAAAAGGCAATTTCGGAATCCGTTCACCAAATCAATTGTCAAATTTATACGTTCGCCGATCTTGACACAATCAGATCAAGCTAATG
GAGTTTTGCCCAACTTGTGGGAATATGCTGCAATTTGAGTTGCCCCATATGGGTAAAGCTTGTAGATTCTTTTGCTCGACTTGTCCATATGTGGCTTACTTGGAGAATAG
GGTTAAGATCAAGAGAAAGCAGCATTTGGATAAAAAGGAATTAGAACCCATAATCTGTGAGGACGATATGAAAAATGCAGCTCAAACTGAAGCAACATGTCCAAAGTGTG
CGTTTGGCAAGGCTGCTTTTATGCAAATACAATTGAGATCAGCCGATGAACCTGCTTCAACATTTTATAAGTGCATGAACGAAAACTGCCGTATAATTTGGCGTGAGGAT
TAAGTGCCATGAAGTGAGATCATGAATTTTTCATTACCCATTTTTTAATTTTTTTTTCCCAATAGGTGTAGAAGTATTTATTTTTAGATTAGAA
Protein sequenceShow/hide protein sequence
MEFCPTCGNMLQFELPHMGKACRFFCSTCPYVAYLENRVKIKRKQHLDKKELEPIICEDDMKNAAQTEATCPKCAFGKAAFMQIQLRSADEPASTFYKCMNENCRIIWRE
D