; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0007870 (gene) of Chayote v1 genome

Gene IDSed0007870
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG02:46014121..46014648
RNA-Seq ExpressionSed0007870
SyntenySed0007870
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ37402.1 putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Rosa chinensis]6.7e-1029.71Show/hide
Query:  MCWCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMI
        + W +W+DRN  +  R +  D   +    C  +  E K+   K    H+   +  N  + +W        K+N D A     G SG+G VIRNE  E + 
Subjt:  MCWCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMI

Query:  FMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKIASRLTFV
         +A P         VEA+A+QEGL  +  +G + +EVE D+  I+N L Q    +TE+G +++ +  +     FV
Subjt:  FMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKIASRLTFV

TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]3.9e-1030.63Show/hide
Query:  WCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMIFM
        W +W +RN  V G         + W    ++ NEF+  N      H+E        +  W       FK+N DA+ +   G +GVG++IR+ K  A+   
Subjt:  WCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMIFM

Query:  AKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIV
        + PV   + V+++EA A  EG+ +A  +G   V +E D+ S++ LL  +T   TELG I+
Subjt:  AKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIV

XP_021809818.1 uncharacterized protein LOC110753261 [Prunus avium]1.4e-1033.33Show/hide
Query:  MCWCVWRDRNKEV-EGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM
        +CW +W++RNK V EGR S  + +     F         K   K+                +W+P     +K+N DAA   E G+SG+G V+RN+K E M
Subjt:  MCWCVWRDRNKEV-EGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM

Query:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVN
          MA P+   T  +  E MA+Q G+  A   GF    +E DS  +VN
Subjt:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVN

XP_023905928.1 uncharacterized protein LOC112017706 [Quercus suber]5.1e-1028.9Show/hide
Query:  WCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMIFM
        W +W  RN+ V+G G  +D   ++ N    ++ EF+  +  +  TH   + Q+      W P +   FK+N DAA+   +  SG G VIRN+KCE M  M
Subjt:  WCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMIFM

Query:  AKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKIASRLTFV
        A     V+  +  E +A ++ +  A   GF  + +E D++SI+  +       + LG ++ +I  +   L +V
Subjt:  AKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKIASRLTFV

XP_030940963.1 uncharacterized protein LOC115965806 [Quercus lobata]6.7e-1030.18Show/hide
Query:  MCWCVWRDRNKEV-EGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM
        + W +W +RN+ V EG G   D +   W      I EFK    K  ++ ++        +K W P     FKMN D  +    G SGVG+VIR+ + + +
Subjt:  MCWCVWRDRNKEV-EGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM

Query:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKI
           + P+ G   V+  EA+A+++G+++A+ MG +R   E DS   +  ++ K    + +G IVK   +I
Subjt:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKI

TrEMBL top hitse value%identityAlignment
A0A2N9GPD6 RNase H domain-containing protein9.5e-1028.48Show/hide
Query:  CWCVWRDRNKEVEGRGSD-YDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWN-PANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM
        CW +W  RN +     S+ Y  L   W   QS ++E+   N +      E  Q+    +  W  P N+  +KMN D AI ++    G+G+VIR+   + +
Subjt:  CWCVWRDRNKEVEGRGSD-YDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWN-PANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM

Query:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKE
          +++ VFG   V+++EA+A +  ++ A  +G   VEVE D+ +I+  L       T  G ++++
Subjt:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKE

A0A2P6QT88 Putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein3.3e-1029.71Show/hide
Query:  MCWCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMI
        + W +W+DRN  +  R +  D   +    C  +  E K+   K    H+   +  N  + +W        K+N D A     G SG+G VIRNE  E + 
Subjt:  MCWCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMI

Query:  FMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKIASRLTFV
         +A P         VEA+A+QEGL  +  +G + +EVE D+  I+N L Q    +TE+G +++ +  +     FV
Subjt:  FMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKIASRLTFV

A0A5C7H0P0 Uncharacterized protein1.9e-1030.63Show/hide
Query:  WCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMIFM
        W +W +RN  V G         + W    ++ NEF+  N      H+E        +  W       FK+N DA+ +   G +GVG++IR+ K  A+   
Subjt:  WCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMIFM

Query:  AKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIV
        + PV   + V+++EA A  EG+ +A  +G   V +E D+ S++ LL  +T   TELG I+
Subjt:  AKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIV

A0A6P5S7Q3 uncharacterized protein LOC1107532616.6e-1133.33Show/hide
Query:  MCWCVWRDRNKEV-EGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM
        +CW +W++RNK V EGR S  + +     F         K   K+                +W+P     +K+N DAA   E G+SG+G V+RN+K E M
Subjt:  MCWCVWRDRNKEV-EGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM

Query:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVN
          MA P+   T  +  E MA+Q G+  A   GF    +E DS  +VN
Subjt:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVN

A0A7N2MEF4 RNase H domain-containing protein1.2e-0939.25Show/hide
Query:  KKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMIFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITEL
        K  W P N   FK+NTD AI EE+G  G+G+VIRNE+ + M  M+K +    DV  VEA A++EG+L+A  +G + + +E DS  +V  L  +      +
Subjt:  KKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMIFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITEL

Query:  GKIVKEI
         K+++ I
Subjt:  GKIVKEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.0e-0423.86Show/hide
Query:  MCWCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFK-KTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM
        + W +W++RN E+  RG +++   +     +  + E++ +T A+   T     Q N      W P  +   K NTDA    +    G+G V+RNEK E  
Subjt:  MCWCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFK-KTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAM

Query:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKIASRLTFV
           A+ +  +  V   E  A++  +L      +  V  E DS  ++ +L    +    L   ++++ ++ S+ T V
Subjt:  IFMAKPVFGVTDVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKIASRLTFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGGTGTGTGTGGCGAGATCGAAATAAAGAGGTGGAGGGCAGAGGAAGCGATTATGATGGTTTGCCTATGGATTGGAATTTCTGTCAATCCTATATTAATGAATT
TAAGAAGACAAATGCAAAGGTTTTCTCTACTCATCGTGAGTATACACAACAGAACAATTTCGACAAAAAAGAGTGGAATCCCGCTAATTATCCTAATTTCAAAATGAATA
CTGATGCTGCTATTCGAGAGGAAATGGGAATTAGTGGAGTGGGCATGGTGATTCGAAATGAAAAATGTGAAGCTATGATTTTCATGGCCAAACCTGTTTTTGGAGTTACA
GACGTGCAACTGGTTGAGGCTATGGCCGTTCAAGAGGGTTTATTGATGGCAGAGGCGATGGGCTTTCAGCGTGTTGAAGTTGAGTTAGATTCGACTTCAATTGTGAATCT
CCTACAACAGAAAACGAAATGTATCACTGAATTGGGCAAAATCGTGAAGGAAATTTGGAAAATTGCAAGCCGCCTTACTTTCGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGGTGTGTGTGGCGAGATCGAAATAAAGAGGTGGAGGGCAGAGGAAGCGATTATGATGGTTTGCCTATGGATTGGAATTTCTGTCAATCCTATATTAATGAATT
TAAGAAGACAAATGCAAAGGTTTTCTCTACTCATCGTGAGTATACACAACAGAACAATTTCGACAAAAAAGAGTGGAATCCCGCTAATTATCCTAATTTCAAAATGAATA
CTGATGCTGCTATTCGAGAGGAAATGGGAATTAGTGGAGTGGGCATGGTGATTCGAAATGAAAAATGTGAAGCTATGATTTTCATGGCCAAACCTGTTTTTGGAGTTACA
GACGTGCAACTGGTTGAGGCTATGGCCGTTCAAGAGGGTTTATTGATGGCAGAGGCGATGGGCTTTCAGCGTGTTGAAGTTGAGTTAGATTCGACTTCAATTGTGAATCT
CCTACAACAGAAAACGAAATGTATCACTGAATTGGGCAAAATCGTGAAGGAAATTTGGAAAATTGCAAGCCGCCTTACTTTCGTGTAG
Protein sequenceShow/hide protein sequence
MCWCVWRDRNKEVEGRGSDYDGLPMDWNFCQSYINEFKKTNAKVFSTHREYTQQNNFDKKEWNPANYPNFKMNTDAAIREEMGISGVGMVIRNEKCEAMIFMAKPVFGVT
DVQLVEAMAVQEGLLMAEAMGFQRVEVELDSTSIVNLLQQKTKCITELGKIVKEIWKIASRLTFV