CuGenDBv2

Gene ID	Sed0007878
Organism	Sechium edule (Chayote v1)
Description	ATP synthase subunit b, chloroplastic
Genome location	LG13:18666396..18667690
RNA-Seq Expression	Sed0007878
Synteny	Sed0007878
Gene Ontology terms	GO:0015986 - ATP synthesis coupled proton transport (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0045263 - proton-transporting ATP synthase complex, coupling factor F(o) (cellular component) GO:0046933 - proton-transporting ATP synthase activity, rotational mechanism (molecular function)
InterPro domains	IPR002146 - ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ASY96331.1 ATP synthase CF0 B subunit [Cucumis melo subsp. agrestis]

3.8e-76

85.95

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Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG----------------------KTREGAIEQLEKARARLRKVEMEADQFRVNG
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG                      + REGAIEQLEKARARLRKVEMEADQFRVNG
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG----------------------KTREGAIEQLEKARARLRKVEMEADQFRVNG

Query:  YSEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        YSEIEREKLNLINSTSKSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  YSEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

YP_004841769.1 ATP synthase CF0 subunit I [Cucumis melo subsp. melo]

2.9e-76

86.41

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Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG                     + REGAIEQLEKARARLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

YP_009752145.1 CF0 subunit I [Linnaeosicyos amara]

5.0e-76

87.5

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Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG              KT       REGAIEQLEKAR RLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQ ENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

YP_009752482.1 CF0 subunit I [Trichosanthes tubiflora]

1.7e-76

88.04

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Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG              KT       REGAIEQLEKARARLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQ ENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

YP_009945403.1 ATP synthase CF0 subunit I [Sechium edule]

3.5e-77

88.59

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Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG              KT       REGAIEQLEKARARLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

TrEMBL top hits

e value

%identity

Alignment

A0A1S4ETZ5 ATP synthase subunit b, chloroplastic

1.4e-76

86.41

Show/hide

Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG                     + REGAIEQLEKARARLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

A0A6H0ER88 ATP synthase subunit b, chloroplastic

8.4e-77

88.04

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Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG              KT       REGAIEQLEKARARLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQ ENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

A0A6H0ERF8 ATP synthase subunit b, chloroplastic

1.7e-77

88.59

Show/hide

Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG              KT       REGAIEQLEKARARLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG--------------KT-------REGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

A0A6M8YGS6 ATP synthase subunit b, chloroplastic

1.4e-76

86.41

Show/hide

Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG                     + REGAIEQLEKARARLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

G3ETX1 ATP synthase subunit b, chloroplastic

1.4e-76

86.41

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Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG                     + REGAIEQLEKARARLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

SwissProt top hits

e value

%identity

Alignment

Q09X31 ATP synthase subunit b, chloroplastic

3.5e-72

78.8

Show/hide

Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTD F+SL YWPSA SFGFNTDILATNPINLSVVLGVLIFFGKG                     + REGA+EQLEKAR+RLRKVE EADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSK+LEQ ENYKNETI FEQQRAIN+VRQ+VFQQAL+GALGTLNSCL+NELHLRTIS NIGMFGTMKEIT+
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

Q14FH1 ATP synthase subunit b, chloroplastic

3.5e-72

79.89

Show/hide

Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKN+TDSF+SLG+W SA SFGFNTDILATNPINLSVVLGVLIFFGKG                     + R GAIEQLEKARARLRKVE+EADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINST K+LEQ ENYKNETI FEQQRAINQVRQ+VFQQALQGALGTLNSCL NELHLRTISANIGMFG MKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

Q49L12 ATP synthase subunit b, chloroplastic

2.1e-72

79.89

Show/hide

Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSF+SLG+WPSA SFGFNTDILATNPINLSVVLGVLIFFGKG                     + R GAIEQLEKARARLRKVEMEA+QFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIE+EKLNLINST K+LEQ ENYKNETI FEQQRAINQVRQ+VFQQALQGALGTLNSCL+NELHLRTISANIGMFG MKEIT+
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

Q4VZP7 ATP synthase subunit b, chloroplastic

2.5e-78

85.87

Show/hide

Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG                     + R GAIEQLEKARARLRKVEMEADQFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINSTSKSLEQ ENYKNETIRFEQQ+AINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

Q8S8Y2 ATP synthase subunit b, chloroplastic

3.5e-72

79.35

Show/hide

Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKNVTDSF+SLG+WPSA SFGFNTDILATNPINLSVVLGVLIFFGKG                     + REGAIEQLEKAR+RLRKVE EA+QFRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINST K+LEQ ENYKNETI+FEQQRAINQVRQ+VFQQAL+GALGTLNSCL+NELHLRTISANIGM GTMKEIT+
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

Arabidopsis top hits

e value

%identity

Alignment

ATCG00130.1 ATPase, F0 complex, subunit B/B', bacterial/chloroplast

1.7e-69

Show/hide

Query:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY
        MKN+TDSF+ LG+WPSA SFGFNTDILATNPINLSVV GVLIFFGKG                     + REGAI+QLE ARARLR VE EAD+FRVNGY
Subjt:  MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKG---------------------KTREGAIEQLEKARARLRKVEMEADQFRVNGY

Query:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN
        SEIEREKLNLINST K+L+Q ENYKNETI FEQQR INQVR++VFQQALQGA+GTLNSCL NELHLRTI+ANIGMFGTMKEIT+
Subjt:  SEIEREKLNLINSTSKSLEQFENYKNETIRFEQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAAAATGTAACCGATTCTTTCATTTCTTTGGGTTACTGGCCATCTGCCGAGAGTTTCGGATTTAATACCGATATTTTAGCAACAAATCCAATAAATCTAAGCGTAGT
GCTTGGTGTATTGATTTTTTTTGGAAAGGGAAAGACTCGCGAGGGGGCCATTGAACAGCTGGAAAAAGCACGGGCCCGCTTACGGAAAGTCGAAATGGAAGCGGATCAGT
TTCGAGTGAATGGATACTCTGAGATAGAACGAGAAAAATTGAATTTGATTAATTCAACTTCTAAAAGTTTGGAACAATTCGAAAATTATAAAAATGAAACTATTCGTTTT
GAACAACAAAGAGCGATTAATCAAGTACGACAACAGGTTTTCCAACAAGCCTTACAAGGAGCTCTAGGAACTCTCAATAGTTGTTTGGACAACGAGTTACATTTACGTAC
CATCAGTGCTAATATTGGCATGTTTGGGACGATGAAAGAAATAACTAACTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MKNVTDSFISLGYWPSAESFGFNTDILATNPINLSVVLGVLIFFGKGKTREGAIEQLEKARARLRKVEMEADQFRVNGYSEIEREKLNLINSTSKSLEQFENYKNETIRF
EQQRAINQVRQQVFQQALQGALGTLNSCLDNELHLRTISANIGMFGTMKEITN

Sed0007878 (gene) of Chayote v1 genome