CuGenDBv2

Gene ID	Sed0007887
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Genome location	LG05:34495313..34500955
RNA-Seq Expression	Sed0007887
Synteny	Sed0007887
Gene Ontology terms	GO:0005635 - nuclear envelope (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR029159 - Casein Kinase 2 substrate IPR038985 - At5g43822-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022136277.1 uncharacterized protein At5g43822 isoform X1 [Momordica charantia]

2.2e-81

78.5

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS F NAS IIGRLQ++QD KNYGSLSG+DGI DA+LAKQ+ SLQL+++SI  TMEELGN+ RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA
        GKQL+K GS+QPS KQLQQRVG+KPSIE C++GL LLCDMHR+EYHLKES+VSAL +LFWK  NH AQDLSSLQQLLIDQPNI KEEVE ++D ILV EA
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

XP_022928123.1 uncharacterized protein At5g43822 isoform X1 [Cucurbita moschata]

4.9e-81

83.42

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEE
        GKQLIK GS+QPS KQLQQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQPNI KEE
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEE

XP_022928127.1 uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata]

3.0e-86

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA
        GKQLIK GS+QPS KQLQQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQPNI KEEVE I+D ILVPEA
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

XP_022989465.1 uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima]

7.3e-85

81.5

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMD WDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA
        GKQLIK GS+QPS KQLQQRVG+KPS+E C++GL+LLCDMHRSEY+LKES+VSAL +LFWKP NH AQDLSSLQQLL+DQPNI KEEVE ++DIILVPEA
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

XP_023529794.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo]

4.4e-82

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDPKNYGSLS   GI DA+LAKQ+ SLQL ++SI  TM ELGNI RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA
        GKQLIK GS+QPS KQLQQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VS+L ELFWKP NH AQDLSSLQQLL+DQPNI KEEVE I+D ILVPEA
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C552 uncharacterized protein At5g43822 isoform X1

1.1e-81

78.5

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS F NAS IIGRLQ++QD KNYGSLSG+DGI DA+LAKQ+ SLQL+++SI  TMEELGN+ RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA
        GKQL+K GS+QPS KQLQQRVG+KPSIE C++GL LLCDMHR+EYHLKES+VSAL +LFWK  NH AQDLSSLQQLLIDQPNI KEEVE ++D ILV EA
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

A0A6J1EJ12 uncharacterized protein At5g43822 isoform X3

1.4e-86

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA
        GKQLIK GS+QPS KQLQQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQPNI KEEVE I+D ILVPEA
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

A0A6J1EJF6 uncharacterized protein At5g43822 isoform X2

2.4e-81

83.42

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEE
        GKQLIK GS+QPS KQLQQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQPNI KEE
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEE

A0A6J1EQT0 uncharacterized protein At5g43822 isoform X1

2.4e-81

83.42

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMDRWDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEE
        GKQLIK GS+QPS KQLQQRVG+KPS+E C++GL+LLCDMHRSEYHLKES+VSAL ELFWKP NH AQDLSSLQQLL+DQPNI KEE
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEE

A0A6J1JMF9 uncharacterized protein At5g43822 isoform X2

3.5e-85

81.5

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEAMVKKYQQ+FRKFKDEMD WDE QV LIS FTNASSIIGRLQV+QDP NYGSLSGMDGI DA+LAKQ+ SLQL ++SI  TMEELGNI RSMEKIYRD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA
        GKQLIK GS+QPS KQLQQRVG+KPS+E C++GL+LLCDMHRSEY+LKES+VSAL +LFWKP NH AQDLSSLQQLL+DQPNI KEEVE ++DIILVPEA
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

SwissProt top hits

e value

%identity

Alignment

Q6NPG7 Uncharacterized protein At5g43822

5.3e-46

49.25

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEA+++K+QQKFRK K+EM++W+  QV  +S F NASSII RLQ +Q+  +YG+L  + GIEDAV+ +Q+G L+    S++N MEE      + EK++RD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPE
        G QL +  S   SK+++++R+G+KP I  C+ GL +L DMH+SEYHLK SI+S L  L  KP      DL++LQ L++DQPNIPK+EV+ I+D+I   E
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPE

Arabidopsis top hits

e value

%identity

Alignment

AT5G43822.1 Pentatricopeptide repeat (PPR) superfamily protein

3.8e-47

49.25

Show/hide

Query:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD
        MEA+++K+QQKFRK K+EM++W+  QV  +S F NASSII RLQ +Q+  +YG+L  + GIEDAV+ +Q+G L+    S++N MEE      + EK++RD
Subjt:  MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRD

Query:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPE
        G QL +  S   SK+++++R+G+KP I  C+ GL +L DMH+SEYHLK SI+S L  L  KP      DL++LQ L++DQPNIPK+EV+ I+D+I   E
Subjt:  GKQLIKSGSDQPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGGCTATGGTGAAAAAGTATCAGCAAAAATTCAGAAAGTTCAAGGATGAAATGGATCGCTGGGATGAGTTTCAAGTTCTCTTGATTTCACATTTCACAAATGCTTC
CTCTATCATCGGGAGATTGCAGGTGATTCAAGACCCTAAGAATTATGGCAGTCTATCTGGCATGGATGGGATTGAAGATGCGGTATTGGCTAAGCAGCTGGGATCCTTGC
AACTTAGTTACACATCTATTAGAAATACAATGGAAGAACTTGGGAATATTTTTCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAAGTGGTTCCGAT
CAGCCATCGAAAAAACAACTACAACAAAGAGTTGGTATAAAACCCAGTATTGAAGTTTGCGTGCATGGGTTAAAGCTTCTATGTGACATGCATCGCTCTGAGTATCATCT
TAAAGAATCTATTGTCTCGGCACTTCGGGAACTTTTCTGGAAACCCGGGAATCATAGAGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGATTGATCAGCCCAACATTC
CGAAAGAGGAAGTTGAACTCATCTATGATATTATACTGGTTCCAGAAGCCTAA

mRNA sequence

Show/hide mRNA sequence

TGAGTTTAGGCATTAATCATCAATTTGGGAGTAAATCTGGAAGTAGAACTACTGGAAAAGGGTTTAGGGTTTTAAGCAAAAGAGGAAGAGAGAGAAAAGGGAGGAAACGA
ATTCCCCTGCCCTTTCATCGCCGCTCTCCATCGCCGCGGGTTCGCCTTTTCGCCGCCATTGCTTGATTCCGACGCCGACGAAGGTTTTTGGGGCAGAATCACCAATTAGA
TCAATCCATATATTTTTTTATATTTAATCCTGAAATCTTCTCAAAGTTCCTCGCAAATAGTGTTCGTTTGGGGTTGTTTCGCGATTTTCAGCAAAGACACTTAATTTTGG
ACTTCCAAATCACTCCGACTCGTGTTTGCCACCCAGGTTTGGCTTGAATTCAAGTATCCATCGGCTGTTGAGTTCATACTGGCGATTTTGCAACAAATCAAACACTTTCC
AGCCAAGAGTGGAGTCCGTTTGACGAACTTTGGTGGTTTTAGCAAAGCAACCTTAAATTCCTATCTATGGAGGCTATGGTGAAAAAGTATCAGCAAAAATTCAGAAAGTT
CAAGGATGAAATGGATCGCTGGGATGAGTTTCAAGTTCTCTTGATTTCACATTTCACAAATGCTTCCTCTATCATCGGGAGATTGCAGGTGATTCAAGACCCTAAGAATT
ATGGCAGTCTATCTGGCATGGATGGGATTGAAGATGCGGTATTGGCTAAGCAGCTGGGATCCTTGCAACTTAGTTACACATCTATTAGAAATACAATGGAAGAACTTGGG
AATATTTTTCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAAGTGGTTCCGATCAGCCATCGAAAAAACAACTACAACAAAGAGTTGGTATAAAACC
CAGTATTGAAGTTTGCGTGCATGGGTTAAAGCTTCTATGTGACATGCATCGCTCTGAGTATCATCTTAAAGAATCTATTGTCTCGGCACTTCGGGAACTTTTCTGGAAAC
CCGGGAATCATAGAGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGATTGATCAGCCCAACATTCCGAAAGAGGAAGTTGAACTCATCTATGATATTATACTGGTTCCA
GAAGCCTAAATTGATATGGAGATATTCAAAACAGTTCAAGAACTTTTGATTGCATCTACAAGCTTTCTTCCAAGCAGAGACTTGTATTTTTGCAATGTTGAGTATTGGAA
GAGATATTTACGAAGGTAAAGCTTAATGGATATTTATCTGTATATCCCCCTGTTTCCACAGTTCTAGGAAGTAGTCTGGCAACTAATTTTTATTTTTGTTTTAGAGGAAA
GA

Protein sequence

Show/hide protein sequence

MEAMVKKYQQKFRKFKDEMDRWDEFQVLLISHFTNASSIIGRLQVIQDPKNYGSLSGMDGIEDAVLAKQLGSLQLSYTSIRNTMEELGNIFRSMEKIYRDGKQLIKSGSD
QPSKKQLQQRVGIKPSIEVCVHGLKLLCDMHRSEYHLKESIVSALRELFWKPGNHRAQDLSSLQQLLIDQPNIPKEEVELIYDIILVPEA

Sed0007887 (gene) of Chayote v1 genome