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Sed0007937 (gene) of Chayote v1 genome

Gene IDSed0007937
OrganismSechium edule (Chayote v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationLG04:45589463..45591066
RNA-Seq ExpressionSed0007937
SyntenySed0007937
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645904.1 hypothetical protein Csa_011859 [Cucumis sativus]1.7e-3069.72Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPPS------GQLFGLLL------RNGFAVSRPPPLNLEKVR
        DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V A GR   DPAK PP+      G  F LLL      RNGFAV + P LNL+KVR
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPPS------GQLFGLLL------RNGFAVSRPPPLNLEKVR

Query:  KEASVENIY
         EA+VE ++
Subjt:  KEASVENIY

KAG7030269.1 RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]3.4e-2682.05Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPPSGQL---FGLLLRNG
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V AQGR GADPAKAPP   +   F  +L NG
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPPSGQL---FGLLLRNG

XP_022139562.1 RPM1-interacting protein 4 [Momordica charantia]9.9e-2693.65Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V A+GRPGADP+KAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP

XP_022975420.1 uncharacterized protein LOC111474733 isoform X1 [Cucurbita maxima]1.3e-2595.24Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V AQGR GADPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP

XP_023535777.1 uncharacterized protein LOC111797108 isoform X1 [Cucurbita pepo subsp. pepo]1.3e-2595.24Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V AQGR GADPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP

TrEMBL top hitse value%identityAlignment
A0A0A0K6Y6 AvrRpt-cleavage domain-containing protein4.5e-3270.27Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPPS------GQLFGLLL------RNGFAVSRPPPLNLEK
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V A GR   DPAK PP+      G  F LLL      RNGFAV + P LNL+K
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPPS------GQLFGLLL------RNGFAVSRPPPLNLEK

Query:  VRKEASVENIY
        VR EA+VE ++
Subjt:  VRKEASVENIY

A0A6J1CEA3 RPM1-interacting protein 44.8e-2693.65Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V A+GRPGADP+KAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP

A0A6J1FE40 uncharacterized protein LOC1114432506.2e-2695.24Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V AQGR GADPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP

A0A6J1ID15 uncharacterized protein LOC111474733 isoform X26.2e-2695.24Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V AQGR GADPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP

A0A6J1IGN4 uncharacterized protein LOC111474733 isoform X16.2e-2695.24Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP
        MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG V AQGR GADPAKAPP
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPP

SwissProt top hitse value%identityAlignment
O22633 Protein NOI48.4e-2075.38Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG--NVGAQGRPGADPAKAPP
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPG  + G     G DP+K  P
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG--NVGAQGRPGADPAKAPP

Q8GYN5 RPM1-interacting protein 49.0e-0654.05Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG
        +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein9.5e-1989.13Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG
        M DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPG
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein1.2e-2154.64Show/hide
Query:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG--NVGAQGRPGADPAKAPPSGQLFGLLLRNGFAVSRPPPLNLEKVRKEASV
        M+DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPG  + G     G DP+K  P  ++  L   +   +     ++L   +K+ +V
Subjt:  MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG--NVGAQGRPGADPAKAPPSGQLFGLLLRNGFAVSRPPPLNLEKVRKEASV

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein7.8e-2154.74Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG--NVGAQGRPGADPAKAPPSGQLFGLLLRNGFAVSRPPPLNLEKVRKEASV
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPG  + G     G DP+K  P  ++  L   +   +     ++L   +K+ +V
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG--NVGAQGRPGADPAKAPPSGQLFGLLLRNGFAVSRPPPLNLEKVRKEASV

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein3.9e-2076.19Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG--NVGAQGRPGADPAKAPP
        DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPG  + G     G DP+K  P
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPG--NVGAQGRPGADPAKAPP

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein2.3e-1271.74Show/hide
Query:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS
        +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Subjt:  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGGACAAAGGTCGCCCATTGCCAAAATTTGGTGAATGGGATGTTAATGATCCGACATCTGCTGAGGGATTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAA
AACAGGCGGAAAACCGGATTCACCTGGAAACGTTGGTGCACAGGGCAGGCCTGGAGCAGATCCTGCCAAGGCACCGCCTTCTGGACAATTGTTTGGTCTATTACTAAGAA
ATGGCTTTGCTGTATCCAGACCCCCCCCGCTGAATCTTGAGAAGGTTCGTAAAGAAGCCTCAGTTGAGAACATATACTGTAATTGTGTCTGCTTTGGCTTCTCGAATACG
ATGAACTTTCATGGAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGGACAAAGGTCGCCCATTGCCAAAATTTGGTGAATGGGATGTTAATGATCCGACATCTGCTGAGGGATTCACTGTGATTTTTAACAAAGCTAGAGATGAGAAGAA
AACAGGCGGAAAACCGGATTCACCTGGAAACGTTGGTGCACAGGGCAGGCCTGGAGCAGATCCTGCCAAGGCACCGCCTTCTGGACAATTGTTTGGTCTATTACTAAGAA
ATGGCTTTGCTGTATCCAGACCCCCCCCGCTGAATCTTGAGAAGGTTCGTAAAGAAGCCTCAGTTGAGAACATATACTGTAATTGTGTCTGCTTTGGCTTCTCGAATACG
ATGAACTTTCATGGAGCCTAG
Protein sequenceShow/hide protein sequence
MTDKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGNVGAQGRPGADPAKAPPSGQLFGLLLRNGFAVSRPPPLNLEKVRKEASVENIYCNCVCFGFSNT
MNFHGA