; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0007969 (gene) of Chayote v1 genome

Gene IDSed0007969
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG09:32328180..32328793
RNA-Seq ExpressionSed0007969
SyntenySed0007969
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC72938.1 hypothetical protein OsI_06800 [Oryza sativa Indica Group]1.2e-2035.66Show/hide
Query:  VASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWN
        V+ +I +   WDT+ I       +A+AI  I L S    D I W+ +  G FSV+SAYHLA+ L++V E S+S  + +++ WN+ WK  A  K+K+ AW 
Subjt:  VASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWN

Query:  ILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA
         + N +PT  N + + +++ + CT+CG+ +E  +H +  C +A
Subjt:  ILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA

XP_023902041.1 uncharacterized protein LOC112013897 [Quercus suber]9.0e-2138.62Show/hide
Query:  ASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLA---MDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGA
        A I  E  +W  ++++A+    EA  I  IPL      D+IIW  N  G FSVKSAY++A   +D   VGE+S+ D+   + LW   W +   PK+++ A
Subjt:  ASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLA---MDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGA

Query:  WNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA
        W +  N +PT  N+Q KG++I + C  CGM  E+N+HV   C+ A
Subjt:  WNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA

XP_035544594.1 uncharacterized protein LOC118347987 [Juglans regia]5.3e-2134.72Show/hide
Query:  KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW
        +V  ++    +W+T LI+ I +KEEAD IC IP+ SM+  D ++W+ +  G+FSV+SAYHL M+  +      S +    K W+S W+++   K+KL  W
Subjt:  KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW

Query:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA
            + + T+ N+  K I     C +C +  ET +HV+  C  A
Subjt:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA

XP_035544636.1 uncharacterized protein LOC118348020 [Juglans regia]9.0e-2138.31Show/hide
Query:  VASIIHEGNK-WDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW
        V  ++ EG K W+   IK+I S+EEAD I  IPL   D  D +IW  +  G+FSVKSAYHL    SRV +  +S+ +   KLW S W++      K   W
Subjt:  VASIIHEGNK-WDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW

Query:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYAVHECLLGGII
            N++ TR N++SK I   + C +C    ET +HV+  C  A ++   G +I
Subjt:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYAVHECLLGGII

XP_035546588.1 uncharacterized protein LOC118348634 [Juglans regia]9.0e-2134.72Show/hide
Query:  KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW
        +V  ++    +W+T LI+ I +KEEAD IC IP+ SM+  D ++W  +  G+FSV+SAYHL M+  +      S +    K W+S W+++   K+KL  W
Subjt:  KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW

Query:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA
            + + T+ N+  K I     C +C +  ET +HV+  C  A
Subjt:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA

TrEMBL top hitse value%identityAlignment
A0A2N9I4S0 Uncharacterized protein5.7e-2140.85Show/hide
Query:  ASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNI
        A I  +   W+  LI AI    EAD I  IPL      D IIW+   NGV+SV+SAYHL M   + GE  +S+NS    LW   W      KIKL  W  
Subjt:  ASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNI

Query:  LKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA
         KN++PT+ N+  K       C LC    E+ +HV+ DCK+A
Subjt:  LKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA

A0A6P9EAZ3 uncharacterized protein LOC1183479872.6e-2134.72Show/hide
Query:  KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW
        +V  ++    +W+T LI+ I +KEEAD IC IP+ SM+  D ++W+ +  G+FSV+SAYHL M+  +      S +    K W+S W+++   K+KL  W
Subjt:  KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW

Query:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA
            + + T+ N+  K I     C +C +  ET +HV+  C  A
Subjt:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA

A0A6P9EBC5 uncharacterized protein LOC1183480204.4e-2138.31Show/hide
Query:  VASIIHEGNK-WDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW
        V  ++ EG K W+   IK+I S+EEAD I  IPL   D  D +IW  +  G+FSVKSAYHL    SRV +  +S+ +   KLW S W++      K   W
Subjt:  VASIIHEGNK-WDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW

Query:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYAVHECLLGGII
            N++ TR N++SK I   + C +C    ET +HV+  C  A ++   G +I
Subjt:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYAVHECLLGGII

A0A6P9ERU8 uncharacterized protein LOC1183486344.4e-2134.72Show/hide
Query:  KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW
        +V  ++    +W+T LI+ I +KEEAD IC IP+ SM+  D ++W  +  G+FSV+SAYHL M+  +      S +    K W+S W+++   K+KL  W
Subjt:  KVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAW

Query:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA
            + + T+ N+  K I     C +C +  ET +HV+  C  A
Subjt:  NILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA

B8AFP4 Reverse transcriptase domain-containing protein5.7e-2135.66Show/hide
Query:  VASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWN
        V+ +I +   WDT+ I       +A+AI  I L S    D I W+ +  G FSV+SAYHLA+ L++V E S+S  + +++ WN+ WK  A  K+K+ AW 
Subjt:  VASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWN

Query:  ILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA
         + N +PT  N + + +++ + CT+CG+ +E  +H +  C +A
Subjt:  ILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein2.4e-1126.53Show/hide
Query:  WDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRA
        WD + I     + +   I  I L    + D+IIWN N+ G ++V+S Y L          + +    S  L    W +  +PK+K   W  L   + T  
Subjt:  WDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPTRA

Query:  NIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYAVHECLLGGIILARN
         + ++G+ I   C  C   NE+  H +  C +A     L    L RN
Subjt:  NIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYAVHECLLGGIILARN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTGCAAGTATTATTCATGAAGGTAATAAGTGGGATACAAATTTGATTAAGGCGATTTGCTCGAAAGAAGAGGCTGATGCTATTTGTGGCATCCCGTTGGGGTC
AATGGATAGGCATGATGAAATTATTTGGAATGCAAATTCTAACGGTGTGTTCAGTGTGAAAAGTGCCTACCACTTAGCGATGGATTTATCTAGAGTTGGAGAAGCTTCTA
CCTCTGATAATTCGATGTCAACAAAGTTGTGGAATTCTTTCTGGAAGGTTGAGGCAGTTCCCAAGATTAAGTTGGGTGCTTGGAATATTTTGAAAAATATGATTCCGACA
AGGGCCAACATTCAGTCGAAGGGAATTGATATTCGTAACTGTTGTACGTTATGTGGGATGCTGAATGAAACAAATTTGCATGTGATTAAGGATTGCAAGTATGCGGTCCA
TGAATGCTTACTCGGGGGAATTATTTTGGCAAGGAATTTGTGCAAAAATCCCTATTCAGGATCGGCCAAAAGCCGTAGTTATAATTTGGCAACTTTGGAACTTTCGAAAT
TCTGTGTTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTTGCAAGTATTATTCATGAAGGTAATAAGTGGGATACAAATTTGATTAAGGCGATTTGCTCGAAAGAAGAGGCTGATGCTATTTGTGGCATCCCGTTGGGGTC
AATGGATAGGCATGATGAAATTATTTGGAATGCAAATTCTAACGGTGTGTTCAGTGTGAAAAGTGCCTACCACTTAGCGATGGATTTATCTAGAGTTGGAGAAGCTTCTA
CCTCTGATAATTCGATGTCAACAAAGTTGTGGAATTCTTTCTGGAAGGTTGAGGCAGTTCCCAAGATTAAGTTGGGTGCTTGGAATATTTTGAAAAATATGATTCCGACA
AGGGCCAACATTCAGTCGAAGGGAATTGATATTCGTAACTGTTGTACGTTATGTGGGATGCTGAATGAAACAAATTTGCATGTGATTAAGGATTGCAAGTATGCGGTCCA
TGAATGCTTACTCGGGGGAATTATTTTGGCAAGGAATTTGTGCAAAAATCCCTATTCAGGATCGGCCAAAAGCCGTAGTTATAATTTGGCAACTTTGGAACTTTCGAAAT
TCTGTGTTGCATAG
Protein sequenceShow/hide protein sequence
MKVASIIHEGNKWDTNLIKAICSKEEADAICGIPLGSMDRHDEIIWNANSNGVFSVKSAYHLAMDLSRVGEASTSDNSMSTKLWNSFWKVEAVPKIKLGAWNILKNMIPT
RANIQSKGIDIRNCCTLCGMLNETNLHVIKDCKYAVHECLLGGIILARNLCKNPYSGSAKSRSYNLATLELSKFCVA