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Sed0007979 (gene) of Chayote v1 genome

Gene IDSed0007979
OrganismSechium edule (Chayote v1)
Descriptionactivating signal cointegrator 1
Genome locationLG01:17754837..17755616
RNA-Seq ExpressionSed0007979
SyntenySed0007979
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR039128 - Activating signal cointegrator 1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7020046.1 Activating signal cointegrator 1 [Cucurbita argyrosperma subsp. argyrosperma]5.8e-3169.23Show/hide
Query:  RKSVIDEHLRLQGHSDHYIKPPLN-----EKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIH
        R SVID+       SD+Y     N     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRKV +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIH
Subjt:  RKSVIDEHLRLQGHSDHYIKPPLN-----EKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIH

Query:  PIFLDPDPREKSTKGRN
        P+FLDP PREKSTK RN
Subjt:  PIFLDPDPREKSTKGRN

XP_022137696.1 uncharacterized protein C1A6.01c [Momordica charantia]3.1e-3270.43Show/hide
Query:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI
        R SVID   ++ +++G+S  ++     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRKV +NED ASE ESHNNILRP DEREVN+IKPNP++QIHP+
Subjt:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI

Query:  FLDPDPREKSTKGRN
        FLDP PREKSTKGRN
Subjt:  FLDPDPREKSTKGRN

XP_023001344.1 uncharacterized protein LOC111495503 [Cucurbita maxima]4.5e-3168.7Show/hide
Query:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI
        R SVID   ++ +++G++   I+    EKELLRKKQE I+EAERAK+NKVVVTFDL+GRKV +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIHP+
Subjt:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI

Query:  FLDPDPREKSTKGRN
        FLDP PREKSTK RN
Subjt:  FLDPDPREKSTKGRN

XP_023519595.1 uncharacterized protein LOC111782962 [Cucurbita pepo subsp. pepo]5.8e-3169.23Show/hide
Query:  RKSVIDEHLRLQGHSDHYIKPPLN-----EKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIH
        R SVID+       SD+Y     N     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRKV +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIH
Subjt:  RKSVIDEHLRLQGHSDHYIKPPLN-----EKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIH

Query:  PIFLDPDPREKSTKGRN
        P+FLDP PREKSTK RN
Subjt:  PIFLDPDPREKSTKGRN

XP_038894201.1 uncharacterized protein LOC120082886 [Benincasa hispida]2.6e-3169.57Show/hide
Query:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI
        R SVID   ++ +++G+S  ++     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRKV +NED ASE ESHNNILR PDEREVN+IKPNPS+QIHP+
Subjt:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI

Query:  FLDPDPREKSTKGRN
        FLDP PREKSTK  N
Subjt:  FLDPDPREKSTKGRN

TrEMBL top hitse value%identityAlignment
A0A0A0LSM8 zf-C2HC5 domain-containing protein1.1e-3066.96Show/hide
Query:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI
        R SVID   ++ +++G+S  ++     EKELL+KKQE I+EAERAK+NKVVVTFDL+GRKV +NED +SE ESH NI+RP DEREVN+IKPNPS+QIHP+
Subjt:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI

Query:  FLDPDPREKSTKGRN
        FLDP PREKSTK RN
Subjt:  FLDPDPREKSTKGRN

A0A5A7T3B5 Pentatricopeptide repeat-containing protein3.1e-3067.83Show/hide
Query:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI
        R SVID   ++ +++G+S  ++     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRKV +NED +SE ESH NILR  DEREVN+IKPNPS+QIHP+
Subjt:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI

Query:  FLDPDPREKSTKGRN
        FLDP PREKSTK RN
Subjt:  FLDPDPREKSTKGRN

A0A6J1C7E8 uncharacterized protein C1A6.01c1.5e-3270.43Show/hide
Query:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI
        R SVID   ++ +++G+S  ++     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRKV +NED ASE ESHNNILRP DEREVN+IKPNP++QIHP+
Subjt:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI

Query:  FLDPDPREKSTKGRN
        FLDP PREKSTKGRN
Subjt:  FLDPDPREKSTKGRN

A0A6J1E707 uncharacterized protein LOC1114313644.8e-3169.23Show/hide
Query:  RKSVIDEHLRLQGHSDHYIKPPLN-----EKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIH
        R SVID+       SD+Y     N     EKELLRKKQE I+EAERAK+NKVVVTFDL+GRKV +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIH
Subjt:  RKSVIDEHLRLQGHSDHYIKPPLN-----EKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIH

Query:  PIFLDPDPREKSTKGRN
        P+FLDP PREKSTK RN
Subjt:  PIFLDPDPREKSTKGRN

A0A6J1KMG5 uncharacterized protein LOC1114955032.2e-3168.7Show/hide
Query:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI
        R SVID   ++ +++G++   I+    EKELLRKKQE I+EAERAK+NKVVVTFDL+GRKV +NED  SE ES N+ILRPPDEREVN+IKPNPS+QIHP+
Subjt:  RKSVID---EHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPI

Query:  FLDPDPREKSTKGRN
        FLDP PREKSTK RN
Subjt:  FLDPDPREKSTKGRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G47610.1 transcription regulators;zinc ion binding3.6e-2354.95Show/hide
Query:  RKSVIDEHLRLQGHSDHYIKP-----PLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIH
        R +VID+       SD+Y           EKEL+RKK+E I+EAER K++KVV+TFDLIGRKV +NED  SE ES N IL PP+ + VN+IKPNP+ ++ 
Subjt:  RKSVIDEHLRLQGHSDHYIKP-----PLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIH

Query:  PIFLDPDPREK
        PIFLDP P EK
Subjt:  PIFLDPDPREK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAAAGTGTGATAGATGAGCATTTGCGGTTGCAAGGCCACTCTGACCACTACATCAAACCACCGTTGAATGAAAAGGAACTTTTGAGAAAGAAACAAGAGATGAT
CAAAGAGGCTGAGCGAGCTAAACAGAACAAGGTGGTTGTAACCTTTGACTTGATTGGCCGAAAGGTTCCTATGAATGAAGATGTTGCTTCTGAATACGAATCGCACAACA
ATATCTTGCGACCACCGGACGAAAGAGAAGTGAACCAGATTAAACCAAACCCATCTATTCAAATTCATCCAATCTTCTTAGATCCGGACCCCAGAGAGAAGTCGACCAAA
GGTAGAAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAAAGTGTGATAGATGAGCATTTGCGGTTGCAAGGCCACTCTGACCACTACATCAAACCACCGTTGAATGAAAAGGAACTTTTGAGAAAGAAACAAGAGATGAT
CAAAGAGGCTGAGCGAGCTAAACAGAACAAGGTGGTTGTAACCTTTGACTTGATTGGCCGAAAGGTTCCTATGAATGAAGATGTTGCTTCTGAATACGAATCGCACAACA
ATATCTTGCGACCACCGGACGAAAGAGAAGTGAACCAGATTAAACCAAACCCATCTATTCAAATTCATCCAATCTTCTTAGATCCGGACCCCAGAGAGAAGTCGACCAAA
GGTAGAAACTGA
Protein sequenceShow/hide protein sequence
MRKSVIDEHLRLQGHSDHYIKPPLNEKELLRKKQEMIKEAERAKQNKVVVTFDLIGRKVPMNEDVASEYESHNNILRPPDEREVNQIKPNPSIQIHPIFLDPDPREKSTK
GRN