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Sed0007980 (gene) of Chayote v1 genome

Gene IDSed0007980
OrganismSechium edule (Chayote v1)
DescriptionG-patch domain-containing protein
Genome locationLG05:1346023..1348928
RNA-Seq ExpressionSed0007980
SyntenySed0007980
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000467 - G-patch domain
IPR026822 - Spp2/MOS2, G-patch domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571605.1 Protein MOS2, partial [Cucurbita argyrosperma subsp. sororia]4.5e-2858.02Show/hide
Query:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG
        L  SDESDLKFE+A       D K+S                   S + PR    EV+MLEK KADL+RLPED GFE+FE VPVE F  ALME YGWRQG
Subjt:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG

Query:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        RGIGRNAKEDV+ KEYN R  KQGLGF +DV
Subjt:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

KAG7011346.1 Protein MOS2, partial [Cucurbita argyrosperma subsp. argyrosperma]4.5e-2858.02Show/hide
Query:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG
        L  SDESDLKFE+A       D K+S                   S + PR    EV+MLEK KADL+RLPED GFE+FE VPVE F  ALME YGWRQG
Subjt:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG

Query:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        RGIGRNAKEDV+ KEYN R  KQGLGF +DV
Subjt:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

XP_008460410.2 PREDICTED: protein MOS2 [Cucumis melo]4.5e-2856.82Show/hide
Query:  LDPSDESDLKFETAD----------------------LKISSEDR-----PRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ
        LD SDESDLKFE+                        +KIS E +     PR    EV+MLEK KADL RLPED GFE+FE VPVE F  ALME YGWRQ
Subjt:  LDPSDESDLKFETAD----------------------LKISSEDR-----PRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ

Query:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        G+GIGRNAKEDV+ KEY+ R  KQGLGF SDV
Subjt:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

XP_022967248.1 protein MOS2-like [Cucurbita maxima]4.5e-2858.02Show/hide
Query:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG
        L  SDESDLKFE+A       D K+S                   S + PR    EV+MLEK KADL+RLPED GFE+FE VPVE F  ALME YGWRQG
Subjt:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG

Query:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        RGIGRNAKEDV+ KEYN R  KQGLGF +DV
Subjt:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

XP_038888213.1 protein MOS2 [Benincasa hispida]2.6e-2857.58Show/hide
Query:  LDPSDESDLKFETA---------------------------DLKISSEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ
        LD S ESDLKFE+A                           D   S+E+ PR    EV+MLEK KADL RLPED GFE+FE VPVE F  ALME YGWRQ
Subjt:  LDPSDESDLKFETA---------------------------DLKISSEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ

Query:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        GRGIGRNAKEDV+ KEYN R  KQGLGF SDV
Subjt:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

TrEMBL top hitse value%identityAlignment
A0A0A0LCH0 G-patch domain-containing protein4.1e-2755.3Show/hide
Query:  LDPSDESDLKFETAD----------------------LKISSEDR-----PRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ
        LD SDES LKFE+A                       +KIS E +     PR    EV+MLEK KADL RLPED GFE+FE VPVE F  ALM  YGWRQ
Subjt:  LDPSDESDLKFETAD----------------------LKISSEDR-----PRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ

Query:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        G+GIGRNAKEDV+ +EY+ R  KQGLGF SDV
Subjt:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

A0A1S3CCE8 protein MOS22.2e-2856.82Show/hide
Query:  LDPSDESDLKFETAD----------------------LKISSEDR-----PRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ
        LD SDESDLKFE+                        +KIS E +     PR    EV+MLEK KADL RLPED GFE+FE VPVE F  ALME YGWRQ
Subjt:  LDPSDESDLKFETAD----------------------LKISSEDR-----PRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ

Query:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        G+GIGRNAKEDV+ KEY+ R  KQGLGF SDV
Subjt:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

A0A5A7VL15 Protein MOS22.2e-2856.82Show/hide
Query:  LDPSDESDLKFETAD----------------------LKISSEDR-----PRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ
        LD SDESDLKFE+                        +KIS E +     PR    EV+MLEK KADL RLPED GFE+FE VPVE F  ALME YGWRQ
Subjt:  LDPSDESDLKFETAD----------------------LKISSEDR-----PRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQ

Query:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        G+GIGRNAKEDV+ KEY+ R  KQGLGF SDV
Subjt:  GRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

A0A6J1HGH8 protein MOS22.2e-2858.02Show/hide
Query:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG
        L  SDESDLKFE+A       D K+S                   S + PR    EV+MLEK KADL+RLPED GFE+FE VPVE F  ALME YGWRQG
Subjt:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG

Query:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        RGIGRNAKEDV+ KEYN R  KQGLGF +DV
Subjt:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

A0A6J1HTX0 protein MOS2-like2.2e-2858.02Show/hide
Query:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG
        L  SDESDLKFE+A       D K+S                   S + PR    EV+MLEK KADL+RLPED GFE+FE VPVE F  ALME YGWRQG
Subjt:  LDPSDESDLKFETA-------DLKIS-------------------SEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQG

Query:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV
        RGIGRNAKEDV+ KEYN R  KQGLGF +DV
Subjt:  RGIGRNAKEDVEAKEYNGRIGKQGLGFFSDV

SwissProt top hitse value%identityAlignment
Q4P9X4 Pre-mRNA-splicing factor SPP22.5e-0533.33Show/hide
Query:  EKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLG
        E L+ D+   PE    +++   P+++FG+AL+   GW++G G G+  K   +A E   R    GLG
Subjt:  EKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLG

Q4WP02 Pre-mRNA-splicing factor spp26.6e-0634.78Show/hide
Query:  DLKISSEDRPRSVSWEVLMLE--KLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNG---RIGKQGLGF
        DL I S  R    S+ V + E    + D+   PE A  +++  +PVE FG AL+   GW++G+ IGR  K    A +Y     RI ++  GF
Subjt:  DLKISSEDRPRSVSWEVLMLE--KLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNG---RIGKQGLGF

Q6NU07 G-patch domain and KOW motifs-containing protein1.2e-0735.71Show/hide
Query:  EKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLGFFSD
        ++ K D+   P+ A   +++VVPV+++G+A++   GW++G GIGR  K+DV+  E   ++  +GLG  +D
Subjt:  EKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLGFFSD

Q90X38 G-patch domain and KOW motifs-containing protein5.9e-0742.42Show/hide
Query:  EKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLG
        +K+  DLR  PE +   ++E VPVE +G+A+++  GW+Q  GIGR  K+DV+  E+  R    GLG
Subjt:  EKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLG

Q9C801 Protein MOS21.7e-1754.76Show/hide
Query:  EDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLGFFSD
        E+R  S+  E LML+ L+ DL  L +D   E+FE VPV+ FG ALM  YGW+ G+GIG+NAKEDVE KEY     K+GLGF  D
Subjt:  EDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLGFFSD

Arabidopsis top hitse value%identityAlignment
AT1G33520.1 D111/G-patch domain-containing protein1.2e-1854.76Show/hide
Query:  EDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLGFFSD
        E+R  S+  E LML+ L+ DL  L +D   E+FE VPV+ FG ALM  YGW+ G+GIG+NAKEDVE KEY     K+GLGF  D
Subjt:  EDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLGFFSD

AT4G25020.1 D111/G-patch domain-containing protein5.1e-1442.35Show/hide
Query:  KISSEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLGF
        K+ + ++P  V  E ++L+ ++ DL  LP+    E+FE  PV+ FG AL+  YGW+ G+GIG  AKEDV+  EY    G +G GF
Subjt:  KISSEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTTGATCCATCGGACGAATCTGATCTCAAGTTCGAGACCGCCGATTTGAAGATTTCGTCGGAGGATCGGCCGCGGTCTGTTTCTTGGGAGGTTCTTATGCTGGA
AAAATTGAAAGCGGATCTGAGGAGGTTACCGGAGGATGCAGGGTTCGAGGAATTTGAGGTTGTTCCTGTTGAAAGATTTGGTGTTGCTTTGATGGAAAGCTATGGATGGC
GGCAGGGTCGGGGAATTGGGAGAAACGCTAAGGAGGATGTTGAAGCTAAGGAATATAATGGAAGAATTGGTAAGCAAGGGCTAGGGTTTTTCAGCGACGTGCACAGGAAT
TGA
mRNA sequenceShow/hide mRNA sequence
AAACAACCGGCCCATGAATACTCTATAAATAAGCAGACGATTTCGAAGATAACTCAACAACGAAAGAAAAATTGATTCACTAAACCCAGACTTCCATTCCCAAAATCAAA
GCAATATGTATTCAAATTCAACCATGAATCTTCCTTCCAAATCCTCATCTTCTTCAAAGCCAAATCTCATGTATTCCATCGGCCGCTGAAGAGAATGGCGCTTGATCCAT
CGGACGAATCTGATCTCAAGTTCGAGACCGCCGATTTGAAGATTTCGTCGGAGGATCGGCCGCGGTCTGTTTCTTGGGAGGTTCTTATGCTGGAAAAATTGAAAGCGGAT
CTGAGGAGGTTACCGGAGGATGCAGGGTTCGAGGAATTTGAGGTTGTTCCTGTTGAAAGATTTGGTGTTGCTTTGATGGAAAGCTATGGATGGCGGCAGGGTCGGGGAAT
TGGGAGAAACGCTAAGGAGGATGTTGAAGCTAAGGAATATAATGGAAGAATTGGTAAGCAAGGGCTAGGGTTTTTCAGCGACGTGCACAGGAATTGAAACAGAGATTCGG
ATTTGAAAAGTCAAAATTGGGGAGAAATTGGATCTTCATTGGCTTATGTTGATTCTTTTTGTAGCTAAGATTTTGTGGAAACTGTGTATTTACCAGAGTATAGGATAAAA
GCCTTGCTGAGATGTAATCTGGACAAGTCTTTTACATGAACGAGCTCTCTTACCCCCAGGATGCTTCTCAATGGTGAAATATGGTAATTATCATTTCACTTGTTTGCAAC
TTAGATTCTTTCAGTTCCAAGAATTATCTGGTGTGTTGTTGATAATGAATCGTGGAGGATATTGGGTCAAATCCCATGGGGGGTTTTAGGCTAATCATAATTGAATCCTG
TGTGAATGTGACAAAATGTATATAGCTTAACGGTAATTGATATTATATACAATGTTTTAACTAAGAGATTATGAGTTCAATTAATGGTTGTCATTTAGAAATTAG
Protein sequenceShow/hide protein sequence
MALDPSDESDLKFETADLKISSEDRPRSVSWEVLMLEKLKADLRRLPEDAGFEEFEVVPVERFGVALMESYGWRQGRGIGRNAKEDVEAKEYNGRIGKQGLGFFSDVHRN