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Sed0007996 (gene) of Chayote v1 genome

Gene IDSed0007996
OrganismSechium edule (Chayote v1)
Descriptionethylene-responsive transcription factor 1-like
Genome locationLG12:117273..117918
RNA-Seq ExpressionSed0007996
SyntenySed0007996
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009873 - ethylene-activated signaling pathway (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001471 - AP2/ERF domain
IPR016177 - DNA-binding domain superfamily
IPR036955 - AP2/ERF domain superfamily
IPR044808 - Ethylene-responsive transcription factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048804.1 putative Ethylene-responsive element binding factor 13 [Cucumis melo var. makuwa]2.6e-2855.63Show/hide
Query:  SKMSSGLE--ESELVVVDWIRRHLLEDEVEK------VEAAVV-----------QINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPW
        S  SS LE   S+L +++ IRRHLLED++ K      VE  ++           +++NNNN  +N     SS     +P +   +  RGLQFRGVRRRPW
Subjt:  SKMSSGLE--ESELVVVDWIRRHLLEDEVEK------VEAAVV-----------QINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPW

Query:  GKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHM
        GKYAAEIRDP+RKGAR+WLGTYHT Q AALAYDRAAFQMRG KAKLNFPH+
Subjt:  GKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHM

KAG6597005.1 Ethylene-responsive transcription factor 13, partial [Cucurbita argyrosperma subsp. sororia]1.8e-3258.16Show/hide
Query:  MSSSDHESKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNR
        MSS+ + S+ SS    SE+ +++WIRRHLLEDE++ V            +  N+ S +SS          + ++ RGLQFRGVRRRPWGKYAAEIRDPNR
Subjt:  MSSSDHESKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNR

Query:  KGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        KGAR+WLGTY T ++AALAYDRAAFQMRG KAKLNFPHM G
Subjt:  KGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

XP_022950239.1 ethylene-responsive transcription factor 1-like [Cucurbita moschata]1.1e-3158.96Show/hide
Query:  SKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWL
        S  S G   SE+ +++WIRRHLLEDE++ V            +  N+ S +SS          + ++ RGLQFRGVRRRPWGKYAAEIRDPNRKGAR+WL
Subjt:  SKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWL

Query:  GTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        GTY T ++AALAYDRAAFQMRG KAKLNFPHM G
Subjt:  GTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

XP_022974259.1 ethylene-responsive transcription factor 13-like [Cucurbita maxima]2.5e-3158.21Show/hide
Query:  SKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWL
        S  S G   SE+ +++WIRRHLLEDE++ V            +  N+ S  S           + ++ RGLQFRGVRRRPWGKYAAEIRDPNRKGAR+WL
Subjt:  SKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWL

Query:  GTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        GTY T ++AALAYDRAAFQMRG KAKLNFPHM G
Subjt:  GTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

XP_023539438.1 ethylene-responsive transcription factor 13-like [Cucurbita pepo subsp. pepo]1.3e-3057.45Show/hide
Query:  MSSSDHESKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNR
        MSS+ + S+ SS    SE+ +++WIRRHLLEDE++ V            +  N+ S +S           + ++ RGLQFRGVRRRPWGKYAAEIRDPNR
Subjt:  MSSSDHESKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNR

Query:  KGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        KGAR+WLGTY T ++AALAYDRAAFQMRG KAKLNFPHM G
Subjt:  KGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

TrEMBL top hitse value%identityAlignment
A0A0A0L893 AP2/ERF domain-containing protein1.3e-2854.97Show/hide
Query:  SKMSSGLE--ESELVVVDWIRRHLLEDEVEK------VEAAVV-----------QINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPW
        S  SS LE   S+L  ++ IRRHLLED++ K      VE  ++           +++NNNN   N     SS     +P +      RGLQFRGVRRRPW
Subjt:  SKMSSGLE--ESELVVVDWIRRHLLEDEVEK------VEAAVV-----------QINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPW

Query:  GKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHM
        GKYAAEIRDP++KGAR+WLGTYHT Q AALAYDRAAFQMRG KAKLNFPH+
Subjt:  GKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHM

A0A5D3DAY8 Putative Ethylene-responsive element binding factor 131.3e-2855.63Show/hide
Query:  SKMSSGLE--ESELVVVDWIRRHLLEDEVEK------VEAAVV-----------QINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPW
        S  SS LE   S+L +++ IRRHLLED++ K      VE  ++           +++NNNN  +N     SS     +P +   +  RGLQFRGVRRRPW
Subjt:  SKMSSGLE--ESELVVVDWIRRHLLEDEVEK------VEAAVV-----------QINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPW

Query:  GKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHM
        GKYAAEIRDP+RKGAR+WLGTYHT Q AALAYDRAAFQMRG KAKLNFPH+
Subjt:  GKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHM

A0A6D2JZL0 AP2/ERF domain-containing protein2.6e-2660.83Show/hide
Query:  VDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYD
        +DWIRR LLED  +   AA               SSSSSSSS   P +  AN      ++GVRRRPWGKYAAEIRDPN+KGAR+WLGTY T  QAALAYD
Subjt:  VDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYD

Query:  RAAFQMRGPKAKLNFPHMAG
        RAAF+MRG KAKLNFPH+ G
Subjt:  RAAFQMRGPKAKLNFPHMAG

A0A6J1GF81 ethylene-responsive transcription factor 1-like5.5e-3258.96Show/hide
Query:  SKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWL
        S  S G   SE+ +++WIRRHLLEDE++ V            +  N+ S +SS          + ++ RGLQFRGVRRRPWGKYAAEIRDPNRKGAR+WL
Subjt:  SKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWL

Query:  GTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        GTY T ++AALAYDRAAFQMRG KAKLNFPHM G
Subjt:  GTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

A0A6J1IH30 ethylene-responsive transcription factor 13-like1.2e-3158.21Show/hide
Query:  SKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWL
        S  S G   SE+ +++WIRRHLLEDE++ V            +  N+ S  S           + ++ RGLQFRGVRRRPWGKYAAEIRDPNRKGAR+WL
Subjt:  SKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWL

Query:  GTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        GTY T ++AALAYDRAAFQMRG KAKLNFPHM G
Subjt:  GTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

SwissProt top hitse value%identityAlignment
O80337 Ethylene-responsive transcription factor 1A9.4e-2164.79Show/hide
Query:  PHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFP
        P      AA+G  +RGVR+RPWGK+AAEIRDP + GAR+WLGT+ T + AALAYDRAAF+MRG +A LNFP
Subjt:  PHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFP

Q40476 Ethylene-responsive transcription factor 12.9e-2267.14Show/hide
Query:  ANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        A   RG  +RGVRRRPWGK+AAEIRDP + GAR+WLGTY T ++AA+AYD+AA++MRG KA LNFPH  G
Subjt:  ANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

Q84XB3 Ethylene-responsive transcription factor 11.6e-2066.67Show/hide
Query:  RGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        +G  +RGVR+RPWGK+AAEIRDP + GAR+WLGTY + ++AALAY +AAF+MRG KA LNFPH  G
Subjt:  RGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

Q8L9K1 Ethylene-responsive transcription factor 138.2e-2560.23Show/hide
Query:  SSSSSDQDPHQVRANAA-----RGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        +S + +  P   +A+ +     +G+Q+RGVRRRPWGK+AAEIRDP + GAR+WLGTY TP+ AA+AYDRAAFQ+RG KAKLNFPH+ G
Subjt:  SSSSSDQDPHQVRANAA-----RGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

Q9LW50 Ethylene-responsive transcription factor 22.5e-2164.79Show/hide
Query:  RANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        +A   +G  +RGVR+RPWGK+AAEIRDP + GAR+WLGTY T ++AALAYD+AA++MRG KA LNFPH  G
Subjt:  RANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

Arabidopsis top hitse value%identityAlignment
AT2G44840.1 ethylene-responsive element binding factor 135.8e-2660.23Show/hide
Query:  SSSSSDQDPHQVRANAA-----RGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG
        +S + +  P   +A+ +     +G+Q+RGVRRRPWGK+AAEIRDP + GAR+WLGTY TP+ AA+AYDRAAFQ+RG KAKLNFPH+ G
Subjt:  SSSSSDQDPHQVRANAA-----RGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAG

AT3G23220.1 Integrase-type DNA-binding superfamily protein2.1e-2070.49Show/hide
Query:  LQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPH
        +++RGVR+RPWGKYAAEIRD  R GAR+WLGT++T + AA AYDRAAF MRG +A LNFPH
Subjt:  LQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPH

AT3G23230.1 Integrase-type DNA-binding superfamily protein9.6e-2160.24Show/hide
Query:  SSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPH
        S+ SS++  QD  Q R        FRGVRRRPWGK+AAEIRDP+R GAR+WLGT+ T ++AA AYDRAAF +RG  A LNFP+
Subjt:  SSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPH

AT4G17500.1 ethylene responsive element binding factor 16.7e-2264.79Show/hide
Query:  PHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFP
        P      AA+G  +RGVR+RPWGK+AAEIRDP + GAR+WLGT+ T + AALAYDRAAF+MRG +A LNFP
Subjt:  PHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFP

AT5G51190.1 Integrase-type DNA-binding superfamily protein3.3e-2169.84Show/hide
Query:  FRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAGR
        +RGVRRRPWGKYAAEIRDPN+KG R+WLGT+ T  +AA  YD+AAF++RG KA LNFP  AG+
Subjt:  FRGVRRRPWGKYAAEIRDPNRKGARMWLGTYHTPQQAALAYDRAAFQMRGPKAKLNFPHMAGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGTAGTGATCATGAGAGCAAGATGAGCAGTGGGTTAGAAGAGTCGGAGTTGGTGGTGGTGGACTGGATTCGGCGCCATCTTCTGGAAGACGAAGTTGAAAAAGT
GGAAGCTGCAGTAGTACAGATCAATAATAATAATAATATTCCAAGTAATAGTGGTAGTAGTAGTAGTAGTAGTAGTAGTGATCAGGATCCTCATCAGGTGAGGGCCAATG
CAGCCAGGGGGCTGCAGTTCCGAGGAGTTCGGAGGAGGCCGTGGGGGAAATACGCGGCAGAGATCAGAGATCCCAACAGAAAAGGGGCTCGAATGTGGCTCGGAACTTAC
CACACTCCCCAACAGGCTGCTCTAGCTTACGATCGAGCTGCTTTCCAGATGCGAGGACCCAAGGCCAAGCTCAACTTTCCGCACATGGCTGGCCGCCCCTAA
mRNA sequenceShow/hide mRNA sequence
TCCTTCCATATTATATTCATAGAAGAAGAAGAAGAATAAATATTCCAAGTGAAGAGTAAGAGTAAGAGTTAAGAGTAAGGCGATGAGCAGTAGTGATCATGAGAGCAAGA
TGAGCAGTGGGTTAGAAGAGTCGGAGTTGGTGGTGGTGGACTGGATTCGGCGCCATCTTCTGGAAGACGAAGTTGAAAAAGTGGAAGCTGCAGTAGTACAGATCAATAAT
AATAATAATATTCCAAGTAATAGTGGTAGTAGTAGTAGTAGTAGTAGTAGTGATCAGGATCCTCATCAGGTGAGGGCCAATGCAGCCAGGGGGCTGCAGTTCCGAGGAGT
TCGGAGGAGGCCGTGGGGGAAATACGCGGCAGAGATCAGAGATCCCAACAGAAAAGGGGCTCGAATGTGGCTCGGAACTTACCACACTCCCCAACAGGCTGCTCTAGCTT
ACGATCGAGCTGCTTTCCAGATGCGAGGACCCAAGGCCAAGCTCAACTTTCCGCACATGGCTGGCCGCCCCTAATAAAACTCATCACTGTTTCAATATTCAATTCCCTAC
CCACTGTGTGTGTGTGTGTGTGTCTTCCTTGTGTATCCAATCATCATCATCTATATATCAATTACCGCTCTCTTCTACCATAATACCATTATTGCA
Protein sequenceShow/hide protein sequence
MSSSDHESKMSSGLEESELVVVDWIRRHLLEDEVEKVEAAVVQINNNNNIPSNSGSSSSSSSSDQDPHQVRANAARGLQFRGVRRRPWGKYAAEIRDPNRKGARMWLGTY
HTPQQAALAYDRAAFQMRGPKAKLNFPHMAGRP