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Sed0008012 (gene) of Chayote v1 genome

Gene IDSed0008012
OrganismSechium edule (Chayote v1)
DescriptionZinc ion binding,DNA binding, putative isoform 3
Genome locationLG07:22366139..22370622
RNA-Seq ExpressionSed0008012
SyntenySed0008012
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060565.1 Zinc ion binding,DNA binding, putative isoform 3 [Cucumis melo var. makuwa]7.5e-1367.21Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVATDGRY
        MEKR++LQK SEQARLIHELP+V+PDIPEPT++DLL+  EE N++LVD  D  KVATD  +
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVATDGRY

KAG7031352.1 hypothetical protein SDJN02_05392, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-1480.7Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT
        MEKRL+LQKSSEQARLIHELPEV+ DI EPT+DDL K  E+EN+MLVDGRDD KVAT
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT

XP_022942556.1 uncharacterized protein At5g08430-like [Cucurbita moschata]2.7e-1582.46Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT
        MEKRL+LQKSSEQARLIHELPEV+ DI EPT+DDLLK  E+EN+MLVDGRDD KVAT
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT

XP_022984438.1 uncharacterized protein At5g08430-like [Cucurbita maxima]2.7e-1582.46Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT
        MEKRL+LQKSSEQARLIHELPEV+ DI EPT+DDLLK  E+EN+MLVDGRDD KVAT
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT

XP_023539109.1 uncharacterized protein At5g08430-like [Cucurbita pepo subsp. pepo]1.5e-1378.95Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT
        MEKRL+LQKSSEQARLIHELPEV+ DI EPT+DDLLK  E+EN+MLVDG D  KVAT
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT

TrEMBL top hitse value%identityAlignment
A0A1S3BSR8 uncharacterized protein At5g08430 isoform X14.0e-1270.18Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT
        MEKR++LQK SEQARLIHELP+V+PDIPEPT++DLL+  EE N++LVD  D  KVAT
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT

A0A1S3BTE6 uncharacterized protein At5g08430 isoform X24.0e-1270.18Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT
        MEKR++LQK SEQARLIHELP+V+PDIPEPT++DLL+  EE N++LVD  D  KVAT
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT

A0A5A7V3X4 Zinc ion binding,DNA binding, putative isoform 33.6e-1367.21Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVATDGRY
        MEKR++LQK SEQARLIHELP+V+PDIPEPT++DLL+  EE N++LVD  D  KVATD  +
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVATDGRY

A0A6J1FP67 uncharacterized protein At5g08430-like1.3e-1582.46Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT
        MEKRL+LQKSSEQARLIHELPEV+ DI EPT+DDLLK  E+EN+MLVDGRDD KVAT
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT

A0A6J1JAH4 uncharacterized protein At5g08430-like1.3e-1582.46Show/hide
Query:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT
        MEKRL+LQKSSEQARLIHELPEV+ DI EPT+DDLLK  E+EN+MLVDGRDD KVAT
Subjt:  MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVAT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAAAGACTTGTACTTCAAAAGTCGTCAGAACAAGCACGGTTGATACATGAGCTTCCAGAAGTGTTACCAGATATTCCTGAACCTACGTACGATGATTTACTAAA
GAATGCTGAAGAAGAAAATTACATGTTGGTTGATGGGAGAGACGACACAAAAGTTGCCACAGATGGTAGATACAGGGGCTCCAGAGTCAAGATTATCGAATCCATGAAAG
ACAGAGCATTCATAATTTCCATCCACTGGTCTTCGTGGATTACATCTACATTTTCGGCCTCATTCAATGTGTCCCTCAACCACAAATTTTTCAAGGTAGAAAGAACAGAT
GATTTCACACTTTGGGTGGAGAAAACCAGTAATAAGAATGAATACCTGGTTGAGCTCACAAAGCTTAAACAACAATGGCAAGATCACAAAGCTAGTCATCCCAATGGCGG
GAACAAGCCTTTATTGCAGACCAATCCTCCACTTGTTATTAATGGACCCCCTAATACACAAGCGACCCCTTACAGGTCAGCCTTACTTAAGACAAAGCAACGGAACATTC
CTCGCAACCAAGAGAGAAGAACAGAGGAGAATAGACACAAAAAAGCTGAGTGGGTGATTCGATCCACAACTGCTCCAGGCAATAAGAAAGAGATTCAACCCAAGGAGGAT
CTGTATACCAGAAACCCATTTCCTCTCGACAATAGATTATTGTTGACTGGAATGACCACGATATTCTTCTCCAAAAAACACCTATGTACTGGAAAAACAGTGATCCCTTC
TACAATGCAAAGTTTGGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAAAGACTTGTACTTCAAAAGTCGTCAGAACAAGCACGGTTGATACATGAGCTTCCAGAAGTGTTACCAGATATTCCTGAACCTACGTACGATGATTTACTAAA
GAATGCTGAAGAAGAAAATTACATGTTGGTTGATGGGAGAGACGACACAAAAGTTGCCACAGATGGTAGATACAGGGGCTCCAGAGTCAAGATTATCGAATCCATGAAAG
ACAGAGCATTCATAATTTCCATCCACTGGTCTTCGTGGATTACATCTACATTTTCGGCCTCATTCAATGTGTCCCTCAACCACAAATTTTTCAAGGTAGAAAGAACAGAT
GATTTCACACTTTGGGTGGAGAAAACCAGTAATAAGAATGAATACCTGGTTGAGCTCACAAAGCTTAAACAACAATGGCAAGATCACAAAGCTAGTCATCCCAATGGCGG
GAACAAGCCTTTATTGCAGACCAATCCTCCACTTGTTATTAATGGACCCCCTAATACACAAGCGACCCCTTACAGGTCAGCCTTACTTAAGACAAAGCAACGGAACATTC
CTCGCAACCAAGAGAGAAGAACAGAGGAGAATAGACACAAAAAAGCTGAGTGGGTGATTCGATCCACAACTGCTCCAGGCAATAAGAAAGAGATTCAACCCAAGGAGGAT
CTGTATACCAGAAACCCATTTCCTCTCGACAATAGATTATTGTTGACTGGAATGACCACGATATTCTTCTCCAAAAAACACCTATGTACTGGAAAAACAGTGATCCCTTC
TACAATGCAAAGTTTGGCCTAA
Protein sequenceShow/hide protein sequence
MEKRLVLQKSSEQARLIHELPEVLPDIPEPTYDDLLKNAEEENYMLVDGRDDTKVATDGRYRGSRVKIIESMKDRAFIISIHWSSWITSTFSASFNVSLNHKFFKVERTD
DFTLWVEKTSNKNEYLVELTKLKQQWQDHKASHPNGGNKPLLQTNPPLVINGPPNTQATPYRSALLKTKQRNIPRNQERRTEENRHKKAEWVIRSTTAPGNKKEIQPKED
LYTRNPFPLDNRLLLTGMTTIFFSKKHLCTGKTVIPSTMQSLA