CuGenDBv2

Gene ID	Sed0008020
Organism	Sechium edule (Chayote v1)
Description	protein MODIFIER OF SNC1 11-like
Genome location	LG03:46516047..46519582
RNA-Seq Expression	Sed0008020
Synteny	Sed0008020
Gene Ontology terms	GO:0016973 - poly(A)+ mRNA export from nucleus (biological process) GO:0005634 - nucleus (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008447291.1 PREDICTED: protein MODIFIER OF SNC1 11-like [Cucumis melo]

6.3e-70

79.41

Show/hide

Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVA AGLNDISNSKN LGENPSQTL+PTISS      SVPPSST        DE K SGK     DG  VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ TT NG+GASNK+EEVKRKARAERFGLSASVTTDDE KKKARLA+FSSTSKPDPQEEEKRKARA+RFSN T NS+TQ DGKGN ETIAD+AGKS
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

XP_022949856.1 protein MODIFIER OF SNC1 11-like [Cucurbita moschata]

1.3e-70

80.39

Show/hide

Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVASAG+NDISNSKN LGENPSQTLDPTISS      SVP SST        DE KGS K  VEGDGE VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ TT NG+GASNKSEEVKRKARAERFGL ASV TDDE KKKARL +FSSTSKPD QEEEKRKARA+RFSN T NSLTQ DGKGN ETIADIAGK+
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

XP_022977777.1 protein MODIFIER OF SNC1 11-like [Cucurbita maxima]

3.3e-71

80.88

Show/hide

Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVASAG+NDISNSKNSLGENPSQTLDPTISS      SVP SST        DE KGS K  VEGDGE VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ TT NG+GASNKSEEVKRKARAERFGL ASV TDDE KKKARL +FSSTSKPD QEEEKRKARA+RFSN T NSLTQ DGKGN ETIADIAGK+
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

XP_023543781.1 protein MODIFIER OF SNC1 11-like [Cucurbita pepo subsp. pepo]

2.8e-70

79.9

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Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVAS+G+NDISNSKN LGENPSQTLDPTISS      SVP SST        DE KGS K  VEGDGE VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ TT NG+GASNKSEEVKRKARAERFGL ASV TDDE KKKARL +FSSTSKPD QEEEKRKARA+RFSN T NSLTQ DGKGN ETIADIAGK+
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

XP_038882639.1 protein MODIFIER OF SNC1 11 [Benincasa hispida]

6.7e-72

80.88

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Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVASAGLNDISNSK+ LGENPSQTLDPTISS      SVP SST        DE KGSGKA VEGDG  VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ T  NG+GASNK+EEVKRKARAERFGLSASVTTDDE KKKARLA+FSSTSKPDPQEEEKRKARA+RFSN T NS TQ DGKGN ETIAD+AGK+
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L0R4 Tho1_MOS11_C domain-containing protein

4.0e-70

79.41

Show/hide

Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVA AGLNDISNSKN LGENPSQTL+ TISS      SVPPSST        DE K +GK   E DG  VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ TT NG+GASNK+EEVKRKARAERFGLSASVTTDDE KKKARLA+FSSTSKPDPQEEEKRKARA+RFSN T NSLTQ DGKGN ETIAD+AGKS
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

A0A1S3BHQ8 protein MODIFIER OF SNC1 11-like

3.0e-70

79.41

Show/hide

Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVA AGLNDISNSKN LGENPSQTL+PTISS      SVPPSST        DE K SGK     DG  VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ TT NG+GASNK+EEVKRKARAERFGLSASVTTDDE KKKARLA+FSSTSKPDPQEEEKRKARA+RFSN T NS+TQ DGKGN ETIAD+AGKS
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

A0A5A7TZD8 Protein MODIFIER OF SNC1 11-like

3.0e-70

79.41

Show/hide

Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVA AGLNDISNSKN LGENPSQTL+PTISS      SVPPSST        DE K SGK     DG  VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ TT NG+GASNK+EEVKRKARAERFGLSASVTTDDE KKKARLA+FSSTSKPDPQEEEKRKARA+RFSN T NS+TQ DGKGN ETIAD+AGKS
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

A0A6J1GD78 protein MODIFIER OF SNC1 11-like

6.1e-71

80.39

Show/hide

Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVASAG+NDISNSKN LGENPSQTLDPTISS      SVP SST        DE KGS K  VEGDGE VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ TT NG+GASNKSEEVKRKARAERFGL ASV TDDE KKKARL +FSSTSKPD QEEEKRKARA+RFSN T NSLTQ DGKGN ETIADIAGK+
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

A0A6J1IR28 protein MODIFIER OF SNC1 11-like

1.6e-71

80.88

Show/hide

Query:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR
        MATVASAG+NDISNSKNSLGENPSQTLDPTISS      SVP SST        DE KGS K  VEGDGE VSDV+RKMRRAERFGISVQLSE+EKRNSR
Subjt:  MATVASAGLNDISNSKNSLGENPSQTLDPTISS------SVPPSST--------DEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSR

Query:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS
        AERFG+ TT NG+GASNKSEEVKRKARAERFGL ASV TDDE KKKARL +FSSTSKPD QEEEKRKARA+RFSN T NSLTQ DGKGN ETIADIAGK+
Subjt:  AERFGICTTGNGMGASNKSEEVKRKARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKS

Query:  GGGA
        GGGA
Subjt:  GGGA

SwissProt top hits

e value

%identity

Alignment

Q9LZ08 Protein MODIFIER OF SNC1 11

7.1e-24

57.38

Show/hide

Query:  GSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSRAERFGICTTG--NGMGASNKSEEVKRKARAERFGL-SASVTTD---DETKKKARLAKF
        GS      GD   V D+++K+RRAERFG+SV+L+E+EKRNSRAERFG       NG   + K+EE+KRKARA+RFG+ SA+ TTD   +E KKKARLA+F
Subjt:  GSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSRAERFGICTTG--NGMGASNKSEEVKRKARAERFGL-SASVTTD---DETKKKARLAKF

Query:  SSTSKPDPQEEEKRKARAVRFS
           +K D  EE KRKARA+RFS
Subjt:  SSTSKPDPQEEEKRKARAVRFS

Arabidopsis top hits

e value

%identity

Alignment

AT5G02770.1 unknown protein

5.0e-25

57.38

Show/hide

Query:  GSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSRAERFGICTTG--NGMGASNKSEEVKRKARAERFGL-SASVTTD---DETKKKARLAKF
        GS      GD   V D+++K+RRAERFG+SV+L+E+EKRNSRAERFG       NG   + K+EE+KRKARA+RFG+ SA+ TTD   +E KKKARLA+F
Subjt:  GSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSRAERFGICTTG--NGMGASNKSEEVKRKARAERFGL-SASVTTD---DETKKKARLAKF

Query:  SSTSKPDPQEEEKRKARAVRFS
           +K D  EE KRKARA+RFS
Subjt:  SSTSKPDPQEEEKRKARAVRFS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGACGGTAGCATCTGCAGGACTCAACGACATTAGTAATAGCAAAAACTCCCTTGGAGAAAACCCTAGCCAAACCCTAGACCCGACCATTTCTTCCTCCGTTCCGCC
GTCGTCAACTGATGAGCCCAAGGGCTCTGGTAAGGCGCCGGTTGAAGGGGACGGTGAATTTGTTTCCGATGTCGAGAGGAAAATGCGCCGGGCTGAGCGGTTTGGGATTT
CTGTGCAGTTGTCTGAGAAAGAAAAGCGGAATTCTCGAGCAGAACGGTTTGGTATCTGTACCACAGGAAATGGGATGGGAGCATCAAATAAGTCGGAGGAGGTGAAGAGG
AAGGCTAGAGCTGAGAGATTTGGGCTTTCTGCATCTGTGACTACTGATGATGAGACGAAGAAGAAAGCACGTCTTGCTAAGTTTTCATCAACGTCAAAGCCAGACCCCCA
GGAGGAAGAAAAGAGGAAGGCAAGGGCTGTCAGGTTTTCTAATTCAACATTAAACTCTCTTACTCAAGGGGATGGGAAAGGAAACGCTGAGACGATTGCAGATATTGCAG
GCAAGTCTGGAGGTGGTGCCTGA

mRNA sequence

Show/hide mRNA sequence

TAAAAAGTTCAGAAACCTGCGCCATTGTCTTTTTCGCGGCAATTCTCCTCCGTAGCCTTCGTCGTTTCCAACCAGTCTCCGATTAGGGTTCCGGTGCTCAAATCCGCTCC
TCCAATGGCGACGGTAGCATCTGCAGGACTCAACGACATTAGTAATAGCAAAAACTCCCTTGGAGAAAACCCTAGCCAAACCCTAGACCCGACCATTTCTTCCTCCGTTC
CGCCGTCGTCAACTGATGAGCCCAAGGGCTCTGGTAAGGCGCCGGTTGAAGGGGACGGTGAATTTGTTTCCGATGTCGAGAGGAAAATGCGCCGGGCTGAGCGGTTTGGG
ATTTCTGTGCAGTTGTCTGAGAAAGAAAAGCGGAATTCTCGAGCAGAACGGTTTGGTATCTGTACCACAGGAAATGGGATGGGAGCATCAAATAAGTCGGAGGAGGTGAA
GAGGAAGGCTAGAGCTGAGAGATTTGGGCTTTCTGCATCTGTGACTACTGATGATGAGACGAAGAAGAAAGCACGTCTTGCTAAGTTTTCATCAACGTCAAAGCCAGACC
CCCAGGAGGAAGAAAAGAGGAAGGCAAGGGCTGTCAGGTTTTCTAATTCAACATTAAACTCTCTTACTCAAGGGGATGGGAAAGGAAACGCTGAGACGATTGCAGATATT
GCAGGCAAGTCTGGAGGTGGTGCCTGAAAAGAACACTCCGTTTCGATGGTCTAGTATCTGGTTAGGTTCCCATAATGGCTTCCATACCCATGTGCATTCCTTTATATGAT
TATGTAGTGCAAAAGTAACATCCATTCTGAGGGCAGATTCATTACTGCAAGGTGCTTTACTAGGCGTTGCTGTGAGACAAGATTCTCTAGTTTCAATTGTGTCAGGATAT
TAATTATCTGGATAGGTGTTAAAGTAATAGCAAATATACCTCCAAAGTTCAAGCCTATCTTACAGTTTATTAAGAATATCAGAAAATTTTCTGAAGTTTTTAACCCTCCA
TTGATTTGGTTCTCCTCATCATTTTATATCTTCTTTGTGATCACAAGTTGGATATCCATGATAGCATTTGAACGGCAGTGCTAAGTTTCCATGTGGATTGGTAACATCTG
ACACTGACTGGTTGAAATTTACTAATTTTGTCAAATTGGGTTTTAGTATTAGTAAAGTTAACGCATCTTGCTTGCATTTCTTTGAGTTTATTATATCGTTAGATTTTTTG
AGTTTTCAAACTATAATTTGTTTGGGTTCTTAGCTTCTTGTTCCTATTTAATGGTAGGCTTTTTTTTGGTATCTTGCTGACTGTAATAATGTAGGATTATGGCCAACTCT
CAAGAGTCTGATCACAGCTAGCTATTATTCGACCATTTACGATCGAGGTTTGGTCTCTTAGCAGCACATCTCATCATCTCATGGCATCACTTATAATTACTCATCAAGGA
AATGATTAGTTTTTATATATAACCTCCAGAATACTATTAAGATTAGAATGGTCATGTGTTGAATGTTATTTAGAACTGCTGTTCAAAATGTCATCATCTCATGAGATTAT
AGCTCCAACTTGTTTTAGAATAAACTGAAGATAAATCTTGAGAGGGGAAGGAAGTATCGAATCCCCTCGGTAGTGGTTGTGTCGTGTCGGAGAAGCTGAATTCTCTGTTC
TAACTTGGGAGTTTCTGATATTCTTGTTTGGTAACGTAGGATAGGCCTAGTCTTTTGGAGGTATATGTTGGTTCTCTTAGAGATATCTGAATGAATTGAGGTCTCTAGCT
CAGAATGGATTGAACTCTACATATAGGTTTCCCGTTATGTGTTTGTTATTTCGTTGTTTTTTTTTCTTTATGTATTTAGTCTCTTCTGTATTTTCGGTTGGATTGTAATG
GTATGGAAGGACTGCAACGTTTTATATGGAATCGATATTTTGATCAAA

Protein sequence

Show/hide protein sequence

MATVASAGLNDISNSKNSLGENPSQTLDPTISSSVPPSSTDEPKGSGKAPVEGDGEFVSDVERKMRRAERFGISVQLSEKEKRNSRAERFGICTTGNGMGASNKSEEVKR
KARAERFGLSASVTTDDETKKKARLAKFSSTSKPDPQEEEKRKARAVRFSNSTLNSLTQGDGKGNAETIADIAGKSGGGA

Sed0008020 (gene) of Chayote v1 genome