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Sed0008040 (gene) of Chayote v1 genome

Gene IDSed0008040
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich cell wall structural protein 1-like
Genome locationLG09:1566760..1568090
RNA-Seq ExpressionSed0008040
SyntenySed0008040
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022964503.1 glycine-rich protein 5-like [Cucurbita moschata]1.9e-3576.86Show/hide
Query:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH
        M+K +VVVVVV FV LVVHA+GRNVPG G  D    LD A APVA  PS    VD+KNI+GGVGGFAGMGG+IGGLFPHLGGVGVIGKYGGIGGGIGFGH
Subjt:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH

Query:  GGFDVGVGGAGGVGGGVFPFP
        GGF  GVGG GGVGGGV PFP
Subjt:  GGFDVGVGGAGGVGGGVFPFP

XP_023000565.1 glycine-rich protein 5-like [Cucurbita maxima]4.2e-3576.86Show/hide
Query:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH
        M K +VVVVVV FV LVVHA+GRNVPG G  D    LD A APVA  PS    VD+KNI+GGVGGFAGMGG+IGGLFPHLGGVGVIGKYGGIGGGIGFGH
Subjt:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH

Query:  GGFDVGVGGAGGVGGGVFPFP
        GGF  GVGG GGVGGGV PFP
Subjt:  GGFDVGVGGAGGVGGGVFPFP

XP_023515156.1 glycine-rich protein 23-like [Cucurbita pepo subsp. pepo]4.2e-3576.03Show/hide
Query:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH
        M+K +VVVVVV FV LVVHA+GRNVPG G  D    +D A APVA  PS    VD+KNI+GGVGGFAGMGG+IGGLFPHLGGVGVIGKYGGIGGGIGFGH
Subjt:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH

Query:  GGFDVGVGGAGGVGGGVFPFP
        GGF  GVGG GGVGGGV PFP
Subjt:  GGFDVGVGGAGGVGGGVFPFP

XP_031736587.1 glycine-rich protein 5-like isoform X3 [Cucumis sativus]2.1e-3473.28Show/hide
Query:  VVVVAFVFLVVHASGRNVPGEGPR--DKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFDV
        V+++ FVFL+++  GRNVPG G R  +K RTL+ AAAPVA+PPS GGV D+KNIFGGVG FAGMGG+IGGLFPHLGGVGVIGKYGGIGGG G GHGGF  
Subjt:  VVVVAFVFLVVHASGRNVPGEGPR--DKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFDV

Query:  GVGGAGGVGGGVFPFP
        GVGG GG+GGG+ PFP
Subjt:  GVGGAGGVGGGVFPFP

XP_038906734.1 glycine-rich protein 5-like [Benincasa hispida]1.3e-3677.59Show/hide
Query:  VVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFDV
        + +VVVAFVFL V+A GRNVP  G ++  +TL+ AAAPVADPPS  GV D+KNIFGGVGGFAGMGG+IGGLFPHLGGVGVIGKYGGIGGGIGFGHGGF  
Subjt:  VVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFDV

Query:  GVGGAGGVGGGVFPFP
        GVGG GGVGGG  PFP
Subjt:  GVGGAGGVGGGVFPFP

TrEMBL top hitse value%identityAlignment
A0A1S3CEA9 glycine-rich cell wall structural protein 1-like1.2e-3270.69Show/hide
Query:  VVVVVAFVFLVVHASGRNVP-GEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFDV
        +VV+VAFVF +++  GR VP G   + + +TL+ AA+PVA+PP  GGV D+KNIFGGVGGF GMGG+IGGLFPHLGGVG IGKYGGIGGG GFGHGGF  
Subjt:  VVVVVAFVFLVVHASGRNVP-GEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFDV

Query:  GVGGAGGVGGGVFPFP
        GVGG GGVGGGV PFP
Subjt:  GVGGAGGVGGGVFPFP

A0A5D3D259 Glycine-rich cell wall structural protein 1-like1.2e-3270.69Show/hide
Query:  VVVVVAFVFLVVHASGRNVP-GEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFDV
        +VV+VAFVF +++  GR VP G   + + +TL+ AA+PVA+PP  GGV D+KNIFGGVGGF GMGG+IGGLFPHLGGVG IGKYGGIGGG GFGHGGF  
Subjt:  VVVVVAFVFLVVHASGRNVP-GEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFDV

Query:  GVGGAGGVGGGVFPFP
        GVGG GGVGGGV PFP
Subjt:  GVGGAGGVGGGVFPFP

A0A6J1CDU6 WW domain-containing protein C660.063.2e-2564.93Show/hide
Query:  MSKSYVVVVVVAFVFLVVHASGRNVPG-EGPRDKGRTLDTAAAPVADPPSLGGVVDEKN-IFGGVGGFAGMGGFIGGLFPHL--GGVGVIGKYGGIGGGI
        M K YV VV+ AFV LVVHASGR+VPG +   DK +TL+ A  PVADPPS GGV ++K  IFGGVGGFAGMGGF+GGLFPHL  GGVG IGK+GGIGGG 
Subjt:  MSKSYVVVVVVAFVFLVVHASGRNVPG-EGPRDKGRTLDTAAAPVADPPSLGGVVDEKN-IFGGVGGFAGMGGFIGGLFPHL--GGVGVIGKYGGIGGGI

Query:  GF---GHGGFDVGVGGAGGVGGGV------FPFP
        G    G GG     GGAGGVGGGV       PFP
Subjt:  GF---GHGGFDVGVGGAGGVGGGV------FPFP

A0A6J1HL05 glycine-rich protein 5-like9.1e-3676.86Show/hide
Query:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH
        M+K +VVVVVV FV LVVHA+GRNVPG G  D    LD A APVA  PS    VD+KNI+GGVGGFAGMGG+IGGLFPHLGGVGVIGKYGGIGGGIGFGH
Subjt:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH

Query:  GGFDVGVGGAGGVGGGVFPFP
        GGF  GVGG GGVGGGV PFP
Subjt:  GGFDVGVGGAGGVGGGVFPFP

A0A6J1KIQ3 glycine-rich protein 5-like2.0e-3576.86Show/hide
Query:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH
        M K +VVVVVV FV LVVHA+GRNVPG G  D    LD A APVA  PS    VD+KNI+GGVGGFAGMGG+IGGLFPHLGGVGVIGKYGGIGGGIGFGH
Subjt:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGH

Query:  GGFDVGVGGAGGVGGGVFPFP
        GGF  GVGG GGVGGGV PFP
Subjt:  GGFDVGVGGAGGVGGGVFPFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G04660.1 glycine-rich protein1.2e-0848.84Show/hide
Query:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTL---DTAAAPV----ADPPSLGGVVDEKNIFG--GVGGFAGMGGF--IGGL-FPHLGGVGVIGK
        MS++  VV V+  +  V  A  R VPGE   D+G+T    DT   P+    AD      V D+K I G  GVGGFAG+GG   +GGL  P +GG+G IGK
Subjt:  MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTL---DTAAAPV----ADPPSLGGVVDEKNIFG--GVGGFAGMGGF--IGGL-FPHLGGVGVIGK

Query:  YGGIGGGIGFGHGGFDVGVGGAGGVGGGV
        YGGIGG  G G      GVGG GGVGGGV
Subjt:  YGGIGGGIGFGHGGFDVGVGGAGGVGGGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAAGAGTTACGTTGTCGTTGTCGTTGTCGCGTTTGTTTTTTTGGTCGTGCATGCTAGCGGGCGTAACGTTCCAGGCGAGGGACCCCGAGACAAGGGCCGAACCCT
AGACACGGCAGCGGCACCCGTGGCGGATCCGCCGAGTCTCGGGGGCGTTGTAGACGAAAAGAACATCTTTGGTGGGGTCGGAGGTTTCGCAGGGATGGGTGGCTTCATCG
GAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTGATTGGCAAGTACGGCGGAATTGGTGGCGGGATTGGCTTCGGTCACGGTGGCTTCGACGTCGGAGTTGGCGGCGCC
GGTGGTGTTGGTGGTGGAGTTTTTCCATTTCCTTAG
mRNA sequenceShow/hide mRNA sequence
TTATCATCTCCATGCATGGAACTTAACCTCAAGTGCCTTCAAAGAGTCTAGAGAGTAGAGAGGAAGAGCAATGTCGAAGAGTTACGTTGTCGTTGTCGTTGTCGCGTTTG
TTTTTTTGGTCGTGCATGCTAGCGGGCGTAACGTTCCAGGCGAGGGACCCCGAGACAAGGGCCGAACCCTAGACACGGCAGCGGCACCCGTGGCGGATCCGCCGAGTCTC
GGGGGCGTTGTAGACGAAAAGAACATCTTTGGTGGGGTCGGAGGTTTCGCAGGGATGGGTGGCTTCATCGGAGGATTGTTTCCACATCTTGGTGGGGTTGGTGTGATTGG
CAAGTACGGCGGAATTGGTGGCGGGATTGGCTTCGGTCACGGTGGCTTCGACGTCGGAGTTGGCGGCGCCGGTGGTGTTGGTGGTGGAGTTTTTCCATTTCCTTAGCATA
GCTAGTTAAATTAGTTATGTTTGTGTGTTATGTTTTAGTTTTCTAAGATTTTGAGGCA
Protein sequenceShow/hide protein sequence
MSKSYVVVVVVAFVFLVVHASGRNVPGEGPRDKGRTLDTAAAPVADPPSLGGVVDEKNIFGGVGGFAGMGGFIGGLFPHLGGVGVIGKYGGIGGGIGFGHGGFDVGVGGA
GGVGGGVFPFP