; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0008060 (gene) of Chayote v1 genome

Gene IDSed0008060
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L18
Genome locationLG08:40065738..40067663
RNA-Seq ExpressionSed0008060
SyntenySed0008060
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK06187.1 50S ribosomal protein L18 [Cucumis melo var. makuwa]2.5e-5286.72Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYVLRLFISLKYITANV+DRNNG VVATAST EHSIK+SLECGRSCNAKAA +VGEVLAMRLKVDGL+QGQGRGIH D+NKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNV-DDASQPSY
        AIVNSLKN+GVKL  DNNV DDA+Q +Y
Subjt:  AIVNSLKNHGVKLNFDNNV-DDASQPSY

XP_022943852.1 uncharacterized protein LOC111448460 [Cucurbita moschata]1.0e-5387.4Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYV+RLFISLKYITANV+DRNNG +VATAST EHSIK SLECGRSCNAKAA VVGEVLAMRLKVDGL+QGQGRGIH+D+NKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNVDDASQPSY
        AIVNSLKN+GVKL  DNN DDAS+PSY
Subjt:  AIVNSLKNHGVKLNFDNNVDDASQPSY

XP_022985582.1 uncharacterized protein LOC111483610 [Cucurbita maxima]5.1e-5386.61Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYV+RLFISLKYITANV+DRNNG +VATAST EHSIK SLECGRSCNAKAA VVGEVLAMRLKVDGL+QGQGRGIH+D+NKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNVDDASQPSY
        AIVNSLKN+GVKL  DNN DDA +PSY
Subjt:  AIVNSLKNHGVKLNFDNNVDDASQPSY

XP_023511782.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo]7.9e-5488.19Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYV+RLFISLKYITANV+DRNNG +VATAST EHSIK SLECGRSCNAKAA VVGEVLAMRLKVDGL+QGQGRGIH+DVNKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNVDDASQPSY
        AIVNSLKN+GVKL  DNN DDAS+PSY
Subjt:  AIVNSLKNHGVKLNFDNNVDDASQPSY

XP_038901007.1 uncharacterized protein LOC120088052 [Benincasa hispida]1.4e-5388.19Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYVLRLFISLKYITANV+DRNNG +VATAST EHSIK SLECGRSCNAKAA VVGEVLAMRLKVDGL+QGQGRGIH DVNKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNVDDASQPSY
        AIVN+LKN+GVKL  DNNVDDAS+ SY
Subjt:  AIVNSLKNHGVKLNFDNNVDDASQPSY

TrEMBL top hitse value%identityAlignment
A0A1S4E442 uncharacterized protein LOC1035015014.7e-5285.94Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYVLRLFISLKYITANV+DRNNG VVATAST EHSIK+SLECGRSCNAKAA +VGEVLAMRLKVDGL+QGQGRGIH D+NKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNV-DDASQPSY
        AIVNSLKN+GVKL  +NNV DDA+Q +Y
Subjt:  AIVNSLKNHGVKLNFDNNV-DDASQPSY

A0A5A7SM55 50S ribosomal protein L184.7e-5285.94Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYVLRLFISLKYITANV+DRNNG VVATAST EHSIK+SLECGRSCNAKAA +VGEVLAMRLKVDGL+QGQGRGIH D+NKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNV-DDASQPSY
        AIVNSLKN+GVKL  +NNV DDA+Q +Y
Subjt:  AIVNSLKNHGVKLNFDNNV-DDASQPSY

A0A5D3C2Z2 50S ribosomal protein L181.2e-5286.72Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYVLRLFISLKYITANV+DRNNG VVATAST EHSIK+SLECGRSCNAKAA +VGEVLAMRLKVDGL+QGQGRGIH D+NKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNV-DDASQPSY
        AIVNSLKN+GVKL  DNNV DDA+Q +Y
Subjt:  AIVNSLKNHGVKLNFDNNV-DDASQPSY

A0A6J1FXG0 uncharacterized protein LOC1114484605.0e-5487.4Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYV+RLFISLKYITANV+DRNNG +VATAST EHSIK SLECGRSCNAKAA VVGEVLAMRLKVDGL+QGQGRGIH+D+NKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNVDDASQPSY
        AIVNSLKN+GVKL  DNN DDAS+PSY
Subjt:  AIVNSLKNHGVKLNFDNNVDDASQPSY

A0A6J1JBQ5 uncharacterized protein LOC1114836102.5e-5386.61Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYV+RLFISLKYITANV+DRNNG +VATAST EHSIK SLECGRSCNAKAA VVGEVLAMRLKVDGL+QGQGRGIH+D+NKEIEKKGF NRTKIW
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNVDDASQPSY
        AIVNSLKN+GVKL  DNN DDA +PSY
Subjt:  AIVNSLKNHGVKLNFDNNVDDASQPSY

SwissProt top hitse value%identityAlignment
A4XLR4 50S ribosomal protein L187.8e-0442.19Show/hide
Query:  LRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGL
        L ++ SLKYI A +ID   GH +  AS+ E  IKS L   +S   +AA+ +G V+A R K  G+
Subjt:  LRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGL

B5YDV9 50S ribosomal protein L182.4e-0531.73Show/hide
Query:  LRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIWAIVNSLKN
        L ++ SL+YI A +ID   GH + +AS+ E  I+S L+  +  N +AA++VGEV+A R     L++G  + +        ++ GF+   K+ A+ +S + 
Subjt:  LRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIWAIVNSLKN

Query:  HGVK
         G++
Subjt:  HGVK

B7K233 50S ribosomal protein L187.8e-0440.91Show/hide
Query:  LRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQ
        L +F S  +I A +ID    H +A AST E  +K SL  G +C A AA  VG+++A R    G++Q
Subjt:  LRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQ

B8E1E9 50S ribosomal protein L182.4e-0531.73Show/hide
Query:  LRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIWAIVNSLKN
        L ++ SL+YI A +ID   GH +  AS+ E  ++S L+  +  N +AA++VGEV+A R     L++G  R +        ++ GF+   K+ A+ +S + 
Subjt:  LRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIWAIVNSLKN

Query:  HGVK
         G++
Subjt:  HGVK

Arabidopsis top hitse value%identityAlignment
AT3G45020.1 Ribosomal L18p/L5e family protein4.1e-4875.21Show/hide
Query:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW
        MTVLKRYVLRLF+S+KYITANV+DRNNG +V TAST EH+IK+SLECGR+CNAKAA +VGEVLAMRLKV+GL  GQGRGIH DV KEIEKKGF +RTK+W
Subjt:  MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIW

Query:  AIVNSLKNHGVKLNFDNNVDD
        A++NSL+N+GV L  D++ DD
Subjt:  AIVNSLKNHGVKLNFDNNVDD

AT5G27820.1 Ribosomal L18p/L5e family protein3.6e-0427.27Show/hide
Query:  LKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIWAIV
        LK YVL++  + K++ A VI      V  +AS+ E +++ +++  R  +  AA  +G++L  RL +  +       + + + KE    G     K+ A++
Subjt:  LKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIWAIV

Query:  NSLKNHGVKL
        +S++  GVKL
Subjt:  NSLKNHGVKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGTGCTAAAGCGATATGTGTTGCGATTATTCATATCTTTGAAGTACATTACAGCCAATGTGATAGATAGAAATAATGGACACGTTGTAGCAACTGCATCCACATG
TGAACACTCCATCAAGAGCTCACTTGAATGTGGCCGGTCTTGTAACGCTAAGGCAGCAGAAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGATC
AAGGGCAAGGAAGAGGGATTCACGTGGATGTAAACAAGGAAATCGAGAAGAAGGGGTTCATAAACCGCACAAAAATCTGGGCTATCGTGAACTCACTCAAGAATCATGGA
GTTAAACTTAATTTCGACAACAATGTTGATGATGCATCTCAACCAAGCTACAATACGCATCAAAGACAATCGTATCGCGACCAGCCAGATTAG
mRNA sequenceShow/hide mRNA sequence
CCCAACTGAAGTCCAGCCCTAGCTTGGGGGACGAACACCAAACCCCTAAATCCCCAAAGCCAACCCATCCATCCATCCATCCATCGAAGAAGAAGATCGCTACCACAAAG
CTTGGCTCTGTCCCAACAATCAAATTCCAATATCCCTTACTTTCTCTTCATGTTTGAGGTGATTTGAAGAAGATTTTGAACATATGACATCTGAGAATGACAGTGCTAAA
GCGATATGTGTTGCGATTATTCATATCTTTGAAGTACATTACAGCCAATGTGATAGATAGAAATAATGGACACGTTGTAGCAACTGCATCCACATGTGAACACTCCATCA
AGAGCTCACTTGAATGTGGCCGGTCTTGTAACGCTAAGGCAGCAGAAGTTGTTGGAGAGGTGTTGGCTATGCGACTCAAAGTCGATGGTCTCGATCAAGGGCAAGGAAGA
GGGATTCACGTGGATGTAAACAAGGAAATCGAGAAGAAGGGGTTCATAAACCGCACAAAAATCTGGGCTATCGTGAACTCACTCAAGAATCATGGAGTTAAACTTAATTT
CGACAACAATGTTGATGATGCATCTCAACCAAGCTACAATACGCATCAAAGACAATCGTATCGCGACCAGCCAGATTAGATAAAGGTGACTATCTAATGCTAAATGAGTT
CGCCTTTTCAAATGGTTGCTAACTTTTTGTAAGTTTAAATGTTCGAGTTGCTCTTTGCCAAACTAGTGGTAACAATGAAACTGTCTTGAATACGTTCTTGAATATCTATC
AGAATCTTCTTGAATCCTTAACAGTGCATTTTCAGGCAACATACTCAAATGATGATGTTATTTTATCTTGAAGAAAAAAAAAGGGGAAGGATTAGAAGAAGAG
Protein sequenceShow/hide protein sequence
MTVLKRYVLRLFISLKYITANVIDRNNGHVVATASTCEHSIKSSLECGRSCNAKAAEVVGEVLAMRLKVDGLDQGQGRGIHVDVNKEIEKKGFINRTKIWAIVNSLKNHG
VKLNFDNNVDDASQPSYNTHQRQSYRDQPD