; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0008066 (gene) of Chayote v1 genome

Gene IDSed0008066
OrganismSechium edule (Chayote v1)
DescriptionNucleic acid-binding, OB-fold-like protein
Genome locationLG05:33890145..33892128
RNA-Seq ExpressionSed0008066
SyntenySed0008066
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144523.1 uncharacterized protein At4g28440 [Cucumis sativus]1.8e-6488.97Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MATP  NAPAKRKPVFVKVE+LKPGTSGHTLTVKV +S NVKVVNKG RS  L  RPQQLTRISECLVGDETGSIVFTARN+QVD+MKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]3.6e-6590.34Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MATP  NAPAKRKPVFVKVE+LKPGTSGHTLTVKV +S NVKVVNKG RS  L  RPQQLTRISECLVGDETGSIVFTARN+QVDIMKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

XP_022136009.1 uncharacterized protein At4g28440-like [Momordica charantia]6.7e-6488.28Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MAT  VNAPAKRKPVF+KVE+LKPGTSGHTL VKV +S NVK+VNKG RSA L  RPQQLTRISECLVGDETGSIVFTARN+QVDIMKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+E AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]3.0e-6488.28Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MATP VNAPAKRKPVF+KVEDLKPG+SGHTLTVKV +S NVKVVNKG RSA    RPQQLTRISECLVGDETGSIVFTARN+QVD+MKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+E AEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.2e-6591.03Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MATP VNAPAKRKPVFVKVE+LKPGTSGHTLTVKV +S NVKVVNKG RS  L  RPQQLTRISECLVGDETGSIVFTARN+QVDIMKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein8.5e-6588.97Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MATP  NAPAKRKPVFVKVE+LKPGTSGHTLTVKV +S NVKVVNKG RS  L  RPQQLTRISECLVGDETGSIVFTARN+QVD+MKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284401.7e-6590.34Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MATP  NAPAKRKPVFVKVE+LKPGTSGHTLTVKV +S NVKVVNKG RS  L  RPQQLTRISECLVGDETGSIVFTARN+QVDIMKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein1.7e-6590.34Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MATP  NAPAKRKPVFVKVE+LKPGTSGHTLTVKV +S NVKVVNKG RS  L  RPQQLTRISECLVGDETGSIVFTARN+QVDIMKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRVE AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1C327 uncharacterized protein At4g28440-like3.2e-6488.28Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MAT  VNAPAKRKPVF+KVE+LKPGTSGHTL VKV +S NVK+VNKG RSA L  RPQQLTRISECLVGDETGSIVFTARN+QVDIMKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+E AEPANFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like1.5e-6488.28Show/hide
Query:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI
        MATP VNAPAKRKPVF+KVEDLKPG+SGHTLTVKV +S NVKVVNKG RSA    RPQQLTRISECLVGDETGSIVFTARN+QVD+MKPG TVTLRNAKI
Subjt:  MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+E AEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284403.1e-4867.61Show/hide
Query:  ATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKID
        A  T  +  KRKPVFVKVE LKPGT+GHTLTVKV  +N V  V +  R A  + RP Q +RI ECL+GDETG I+FTARN+QVD+MKPG TV LRN++ID
Subjt:  ATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKID

Query:  MFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGR+EA   A+F VKEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNV

Arabidopsis top hitse value%identityAlignment
AT1G03810.1 Nucleic acid-binding, OB-fold-like protein1.7e-4161.87Show/hide
Query:  TPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKIDM
        T    AP KRKPVFVKV+ LKPGTSGHTL VKV  SN VK      R + L  +P    RI+ECL+GD+TG I+FTARN+QVD+MK G TV LRNAKID+
Subjt:  TPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKIDM

Query:  FKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELV
        FK +MR+AVD+WGR+E   P +FEV   NNLSLVEYE++
Subjt:  FKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELV

AT1G10590.1 Nucleic acid-binding, OB-fold-like protein1.7e-4164.71Show/hide
Query:  AKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKIDMFKGSMRL
        A RKPVF KV +L+PGT+GH+L VKV   N   V+ +G      MG   +  RI+ECLVGDETG I+FTARN+QVD+MK G  VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRVEAA-EPANFEVKEDNNLSLVEYELVNVE
        AVD+WGRVE A EP +  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRVEAA-EPANFEVKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein3.1e-4365.67Show/hide
Query:  RKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKIDMFKGSMRLAV
        +KP F KV+ L+PGTSGH + VK+ ++   K+V +  R+ G   R     RISEC+VGDETG IVFTARN+QVD+MK G TVTLRNAKIDM+KGSMRLAV
Subjt:  RKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKIDMFKGSMRLAV

Query:  DKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        DKWGRVE  EPA+F+VKED N+SL+EYELVNV E
Subjt:  DKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein2.1e-4773.33Show/hide
Query:  KRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKIDMFKGSMRLA
        K+KPVFVKV+ LKPGTSGHTLTVKV   N+V      A S+ L  RP    RISECLVGDET  I+FTARN+QV++MKPG TV LRNAKIDMFKGSMRLA
Subjt:  KRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE
        VDKWGR+EA EPA+  VKEDNNLSLVEYELVNV E
Subjt:  VDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein2.2e-4967.61Show/hide
Query:  ATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKID
        A  T  +  KRKPVFVKVE LKPGT+GHTLTVKV  +N V  V +  R A  + RP Q +RI ECL+GDETG I+FTARN+QVD+MKPG TV LRN++ID
Subjt:  ATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKID

Query:  MFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNV
        MFKG+MRL VDKWGR+EA   A+F VKEDNNLSLVEYEL+NV
Subjt:  MFKGSMRLAVDKWGRVEAAEPANFEVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCCAACAGTGAACGCCCCAGCCAAGAGGAAGCCTGTGTTCGTTAAAGTAGAAGACCTAAAGCCTGGCACGAGCGGCCACACCCTCACTGTCAAGGTCGCAAC
CTCCAACAATGTCAAGGTTGTCAATAAAGGAGCACGATCCGCCGGGCTTATGGGCCGCCCTCAGCAGTTAACTCGCATCTCTGAATGTCTTGTCGGCGATGAGACTGGTT
CCATCGTCTTCACAGCTCGAAATGAACAAGTTGATATCATGAAGCCAGGAGGCACTGTGACCCTAAGGAATGCTAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCA
GTAGATAAATGGGGACGAGTTGAAGCGGCTGAACCAGCAAACTTTGAGGTTAAAGAGGACAACAATCTCTCACTGGTCGAATATGAACTGGTTAATGTTGAAGAGTAA
mRNA sequenceShow/hide mRNA sequence
GAAAATCCCAAATTCTGAGTGCAACCTGAAATTAAATTCTTAGGGCTAGGGTTTTGACCTTCATTCTCCATTTTCACTTTTCAACAGAGCTTCGATTCGATTTCCATGGC
GACGCCAACAGTGAACGCCCCAGCCAAGAGGAAGCCTGTGTTCGTTAAAGTAGAAGACCTAAAGCCTGGCACGAGCGGCCACACCCTCACTGTCAAGGTCGCAACCTCCA
ACAATGTCAAGGTTGTCAATAAAGGAGCACGATCCGCCGGGCTTATGGGCCGCCCTCAGCAGTTAACTCGCATCTCTGAATGTCTTGTCGGCGATGAGACTGGTTCCATC
GTCTTCACAGCTCGAAATGAACAAGTTGATATCATGAAGCCAGGAGGCACTGTGACCCTAAGGAATGCTAAGATTGACATGTTTAAAGGTTCTATGAGGTTAGCAGTAGA
TAAATGGGGACGAGTTGAAGCGGCTGAACCAGCAAACTTTGAGGTTAAAGAGGACAACAATCTCTCACTGGTCGAATATGAACTGGTTAATGTTGAAGAGTAACTTTGAA
TCCGCAATGTTTATTTATCATGTCATGGATTTACTTTTTATTGTGTGGTGGACTGCTATTTAACTGTTATACAGTTTTATCTGATAACAAAAATCTTGCCGAGGGTAATA
TAAGCTTATTATTGCTGTTACTACTGATTTCTACACGTCTAATTTGGATCTGATGTGATAAAGATCTGGACAGGCAAGATCAATTGTTTCTTCTGAACGTATTAGTTTGA
AAAGTAAATATCTTGTCCCATTTTTGTGTTCGA
Protein sequenceShow/hide protein sequence
MATPTVNAPAKRKPVFVKVEDLKPGTSGHTLTVKVATSNNVKVVNKGARSAGLMGRPQQLTRISECLVGDETGSIVFTARNEQVDIMKPGGTVTLRNAKIDMFKGSMRLA
VDKWGRVEAAEPANFEVKEDNNLSLVEYELVNVEE