CuGenDBv2

Gene ID	Sed0008094
Organism	Sechium edule (Chayote v1)
Description	ferredoxin-thioredoxin reductase, variable chain
Genome location	LG07:39423422..39425400
RNA-Seq Expression	Sed0008094
Synteny	Sed0008094
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0016310 - phosphorylation (biological process) GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0003951 - NAD+ kinase activity (molecular function) GO:0017050 - D-erythro-sphingosine kinase activity (molecular function)
InterPro domains	IPR004207 - Ferredoxin thioredoxin reductase, alpha chain IPR008990 - Electron transport accessory-like domain superfamily IPR044166 - Ferredoxin-thioredoxin reductase, variable chain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034101.1 sphingoid long-chain bases kinase 1 [Cucumis melo var. makuwa]

1.5e-54

71.82

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Query:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A
        M+ IA+SIG++P P P+    AAR  CS  VFS SD +   SSS  SLSSV VNPFN SIRRGRR+       SDSG SSS T+VSAA TSLSEEET  A
Subjt:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A

Query:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        AA +IGARVRVKVPLKVYHVAKLPEA+LEGMEG LKDYVRVWKGK VSANLP+KVEFVVP++GR P+KFVAHL+EEEFEYV
Subjt:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

XP_004147092.1 ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus]

7.8e-56

73.48

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Query:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A
        M+SIA+SIGVIPSPAP+    AAR  CS  VFS +D K   SSS  SLSS+ VNPFN SIRRGRR+       SDSG SSS T+VSAA TSLSEEET  A
Subjt:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A

Query:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        AA +IGARVRVKVPLKVYHVAKLP+A+LEGMEG +KDYVRVWKGK VSANLP+KVEFVVP++GR PVKFVAHL+EEEFEYV
Subjt:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

XP_022957590.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita moschata]

1.1e-54

73.03

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Query:  MMSIASSIGVIPSPAPAPAARLGCSTAVFSISDYKSS---SANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-AAAG
        M+++A+SIGVIP+PAP  AAR  CS  VFS +D+KSS   S +SLSSV VNPFN SI RGRR        SDSG  SS  +VSAA TSLSE+ET  AAA 
Subjt:  MMSIASSIGVIPSPAPAPAARLGCSTAVFSISDYKSS---SANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-AAAG

Query:  KIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        +IGARVRVKVPLKVYHVAKLPEADLEGMEG LKDYVRVWKGK VSANLP+KVEFVVP++GR PVKFVAHL+EEEFEYV
Subjt:  KIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

XP_023549490.1 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like [Cucurbita pepo subsp. pepo]

2.3e-55

73.6

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Query:  MMSIASSIGVIPSPAPAPAARLGCSTAVFSISDYKSS---SANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-AAAG
        M+++A+SIGVIP+PAP  AAR  CS  VFS +D+KSS   S +SLSSV VNPFN SIRRGRR        SDSG  SS  +VSAA TSLSE+ET  AAA 
Subjt:  MMSIASSIGVIPSPAPAPAARLGCSTAVFSISDYKSS---SANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-AAAG

Query:  KIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        +IGARVRVKVPLKVYHVAKLPEADLEGMEG LKDYVRVWKGK VSANLP+KVEFVVP++GR PVKFVAHL+EEEFEYV
Subjt:  KIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

XP_038893043.1 ferredoxin-thioredoxin reductase, variable chain-like [Benincasa hispida]

2.3e-55

73.48

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Query:  MMSIASSIGVIPSPAP---APAARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A
        M+SIA+SIGVIP+PAP   + AAR  CS  VFS +D K   SSS  SLSSV VNPFN SIRRGRR+       SDSG S S T+VSAA TSLSEEET  A
Subjt:  MMSIASSIGVIPSPAP---APAARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A

Query:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        AA +IGARVRVKVPLKVYHVAKLPEA+LEGMEG LKDYVRVWKGK VSANLP+KVEFVVP++GR PVKFVAHL+EEEFEY+
Subjt:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV36 FeThRed_A domain-containing protein

3.8e-56

73.48

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Query:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A
        M+SIA+SIGVIPSPAP+    AAR  CS  VFS +D K   SSS  SLSS+ VNPFN SIRRGRR+       SDSG SSS T+VSAA TSLSEEET  A
Subjt:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A

Query:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        AA +IGARVRVKVPLKVYHVAKLP+A+LEGMEG +KDYVRVWKGK VSANLP+KVEFVVP++GR PVKFVAHL+EEEFEYV
Subjt:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

A0A1S3BEI2 ferredoxin-thioredoxin reductase, variable chain

7.1e-55

71.82

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Query:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A
        M+ IA+SIG++P P P+    AAR  CS  VFS SD +   SSS  SLSSV VNPFN SIRRGRR+       SDSG SSS T+VSAA TSLSEEET  A
Subjt:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A

Query:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        AA +IGARVRVKVPLKVYHVAKLPEA+LEGMEG LKDYVRVWKGK VSANLP+KVEFVVP++GR P+KFVAHL+EEEFEYV
Subjt:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

A0A5D3D039 Sphingoid long-chain bases kinase 1

7.1e-55

71.82

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Query:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A
        M+ IA+SIG++P P P+    AAR  CS  VFS SD +   SSS  SLSSV VNPFN SIRRGRR+       SDSG SSS T+VSAA TSLSEEET  A
Subjt:  MMSIASSIGVIPSPAPAP---AARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-A

Query:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        AA +IGARVRVKVPLKVYHVAKLPEA+LEGMEG LKDYVRVWKGK VSANLP+KVEFVVP++GR P+KFVAHL+EEEFEYV
Subjt:  AAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

A0A6J1H0Z6 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

5.5e-55

73.03

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Query:  MMSIASSIGVIPSPAPAPAARLGCSTAVFSISDYKSS---SANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-AAAG
        M+++A+SIGVIP+PAP  AAR  CS  VFS +D+KSS   S +SLSSV VNPFN SI RGRR        SDSG  SS  +VSAA TSLSE+ET  AAA 
Subjt:  MMSIASSIGVIPSPAPAPAARLGCSTAVFSISDYKSS---SANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-AAAG

Query:  KIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        +IGARVRVKVPLKVYHVAKLPEADLEGMEG LKDYVRVWKGK VSANLP+KVEFVVP++GR PVKFVAHL+EEEFEYV
Subjt:  KIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

A0A6J1KDF2 ferredoxin-thioredoxin reductase, variable chain, chloroplastic-like

2.7e-54

72.47

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Query:  MMSIASSIGVIPSPAPAPAARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-AAAG
        M+++A+SIGVIP+PAP  AAR  CS  VFS +D+K   SSS +SLSSV VNPFN SI RGRR        SDSG  SS  +VSAA TSLSE+ET  AAA 
Subjt:  MMSIASSIGVIPSPAPAPAARLGCSTAVFSISDYK---SSSANSLSSVTVNPFNYSIRRGRRISG-----SDSGISSSGTSVSAAATSLSEEETG-AAAG

Query:  KIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        +IGARVRVKVPL VYHVAKLPEADLEGMEG LKDYVRVWKGK VSANLP+KVEFVVP++GR PVKFVAHL+EEEFEYV
Subjt:  KIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

SwissProt top hits

e value

%identity

Alignment

P38365 Ferredoxin-thioredoxin reductase, variable chain, chloroplastic

4.7e-19

48.54

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Query:  SSSGTSVSAAATSLSEEETGAAAGKIGARVRVKVPLKVYHVAKLPEADL-EGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEF
        SS+G   S+++    +EE      K+G +V+VK PLKVYHV KLPE +L   M G +K YV  WKGK++S N PFKVE+ + +  R  VK V HL+EEEF
Subjt:  SSSGTSVSAAATSLSEEETGAAAGKIGARVRVKVPLKVYHVAKLPEADL-EGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEF

Query:  EYV
        E +
Subjt:  EYV

P80680 Ferredoxin-thioredoxin reductase, variable chain

2.8e-24

62.79

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Query:  ETGAAAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGR-SPVKFVAHLREEEFEYV
        E  AAA KIG RVRV  PL+VYHV K P+ D++GMEG +K YV VWKGK V+AN PFKVEF + ++G+  PV+F AHLRE+EFE+V
Subjt:  ETGAAAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGR-SPVKFVAHLREEEFEYV

Q55781 Ferredoxin-thioredoxin reductase, variable chain

1.1e-04

38.67

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Query:  IGARVRVKVPLKVYH--VAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEE
        +G RVRV   + VYH    K    DL+GMEG +   +  W+G+ +SANLP  V+F          +F AH R +E
Subjt:  IGARVRVKVPLKVYH--VAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEE

Arabidopsis top hits

e value

%identity

Alignment

AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

5.1e-29

63.83

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Query:  AAATSLSEEETGAAAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
        +++TSL  EE   A  KIGARVRV VPLKVYHV ++PE +L GMEG +KDYV +WKGK +SANLPFKV+FV  I+GR PVKF  HL+E+EFE +
Subjt:  AAATSLSEEETGAAAGKIGARVRVKVPLKVYHVAKLPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1

5.6e-28

48.08

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Query:  PAARLGCSTAVFSI----SDYKSSSANSLSSVTVNPFNYSIRRGRRISGSDSGISSSGTSVSAAATSLSEEETGAAAGKIGARVRVKVPLKVYHVAKLPE
        P A   C  A  S+    S  K SS+   S  T+   + +I+    I+ +D+  SSS +S         EE    A  KIG+RVRV  PLKVYHV ++PE
Subjt:  PAARLGCSTAVFSI----SDYKSSSANSLSSVTVNPFNYSIRRGRRISGSDSGISSSGTSVSAAATSLSEEETGAAAGKIGARVRVKVPLKVYHVAKLPE

Query:  ADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV
         DLEGMEG LKDYV VWKGK +SANLP+K+EF   I+GR  VKFV+HL+E+EFE++
Subjt:  ADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATGAGCATCGCAAGCAGTATCGGCGTGATACCATCGCCGGCGCCGGCGCCGGCCGCTCGTCTTGGCTGTTCTACGGCGGTATTCTCCATTTCCGATTACAAATCCTC
CTCCGCTAATTCTCTATCGTCTGTTACTGTCAATCCTTTCAACTACTCGATTAGAAGAGGGAGAAGAATCTCCGGATCGGATTCCGGAATCTCGTCTTCAGGAACTTCCG
TTTCGGCGGCGGCGACGTCGTTATCGGAGGAGGAAACTGGCGCCGCCGCCGGTAAAATTGGGGCGAGAGTTAGGGTTAAGGTGCCGTTGAAGGTGTATCATGTAGCGAAG
TTACCGGAGGCAGATCTGGAGGGGATGGAAGGATCGTTGAAGGATTATGTACGCGTCTGGAAAGGGAAGCATGTTTCGGCCAATCTTCCGTTTAAGGTGGAGTTTGTTGT
TCCGATTGACGGCCGTTCGCCGGTCAAATTCGTTGCTCATCTCAGGGAGGAAGAATTCGAATACGTTTAA

mRNA sequence

Show/hide mRNA sequence

CGCGAAGTGGGAAATTAAAGCAAGAGAGAAAATTCTGAAAATATATATATATTTTTAAAAAAACAATAATAAATAACTCCTTCGGTGAACGACTCCACCGGCGCCACAGA
GATGATGAGCATCGCAAGCAGTATCGGCGTGATACCATCGCCGGCGCCGGCGCCGGCCGCTCGTCTTGGCTGTTCTACGGCGGTATTCTCCATTTCCGATTACAAATCCT
CCTCCGCTAATTCTCTATCGTCTGTTACTGTCAATCCTTTCAACTACTCGATTAGAAGAGGGAGAAGAATCTCCGGATCGGATTCCGGAATCTCGTCTTCAGGAACTTCC
GTTTCGGCGGCGGCGACGTCGTTATCGGAGGAGGAAACTGGCGCCGCCGCCGGTAAAATTGGGGCGAGAGTTAGGGTTAAGGTGCCGTTGAAGGTGTATCATGTAGCGAA
GTTACCGGAGGCAGATCTGGAGGGGATGGAAGGATCGTTGAAGGATTATGTACGCGTCTGGAAAGGGAAGCATGTTTCGGCCAATCTTCCGTTTAAGGTGGAGTTTGTTG
TTCCGATTGACGGCCGTTCGCCGGTCAAATTCGTTGCTCATCTCAGGGAGGAAGAATTCGAATACGTTTAATCGGGATGATTGAATCTCAGGATTCATTCCAAGCTTCTT
CTGTGCAGTGTTATCATCAACTTCTTGAGGTTTGTGATCCTCTTCCATTTACATTATTTACTCTTTTTTTGCCTTTGTAATGTAGAAATTTGCTGATTAACTTTCTTGAT
TATCGATGTTTCTCTGTAAAATAATTGATCCAAGAGGTAAATTTAGTCATCTAATACATGTTGAATCAAATGGTTTCTAATTTAGTCTCTCTTTGAGTGCCCACGGTGTG
GTACAGTGGTCGAAAACTTGGGCTTCATGAGGTATGCTCCCTCAAGGTCGTCCTAGGTTCGAGAGTCACCTCTGACATTACTCCTTCAATCGATATCTCTCGGTGCCTGG
TCCAAGGACGGGTGTGGTTACCCTTGTTTCAACATAAATAAAATTAGTCTCTCTTTTATGGCATAGAGAGGTAATATTCTTTATCCATGTATGTGCAAAATAATCCAAGA
ATTGCCCAATGACCACCCCGTCTATTGTGACTGATTACTGATGTGGAGAAGAATTAGTGGGAGAACGCATGAAGCCTAATTTTAGATGATTATTGAGGGGTTTCCCGAGG
CCCACGTTTAGAGTTATGAGTTCAATTCATGATGGTCACGTACGTATTGTCTATGGATTTCCATGACAATTAGATGTAGTAGGGCCAAATGGTTGTCTTGTGAAGATATG
TTTGATGGATACTTGGCTAAGAAGCATGAATAGATACATATATGAGAGATGGATGCAACACAACATTGATAAGAAAAAGACAGGTACACGAGTTTGCCCAATGGTCAAAT
GCGCCTCGGAAAACTTAAAGATGATGAGTTTGATTCATGGTGGCCACCAACCTAGGAATTCATTTTCTAATAGTTTTCTTTGACAACTAACATGCAGTATGGTCATATGT
TTTCTTGTGAGAATAGTTGAGGTACGTATAAGATGACTCAGTCACTCATAGGTAACAAAAAAAAATGTTTATTAAGATATTTACGTAGCCCTGCCTAGTAGTCAAATAAA
ATAATGACCTTGTAAATCATTAAGTTCTGTTTTGATTCAATCTATGATGGTAGCCTACTTAAGAATTTATTTCATATACCTATCTTGACATTCAAATGTATGAGGGTGAG
ACCGTTGTCTCTTGAAAGTAGTCAAGGTGCATGTAAGCTAACCCAAACACTCACAAGTATTAAAAAACAATTAAGCGTTCAAGTTTATGCATTTATATGCTTCAAAAAAG
AATTTGATGTATTTTGCTCTCAGTTTATTTGTAAATATGAGTTTTGTAAGAATAGTTAAAGCCACTTGCATTCTGGTTTTAGTGGATGGTTGATTTGGTAGGTTTGGAT

Protein sequence

Show/hide protein sequence

MMSIASSIGVIPSPAPAPAARLGCSTAVFSISDYKSSSANSLSSVTVNPFNYSIRRGRRISGSDSGISSSGTSVSAAATSLSEEETGAAAGKIGARVRVKVPLKVYHVAK
LPEADLEGMEGSLKDYVRVWKGKHVSANLPFKVEFVVPIDGRSPVKFVAHLREEEFEYV

Sed0008094 (gene) of Chayote v1 genome