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Sed0008122 (gene) of Chayote v1 genome

Gene IDSed0008122
OrganismSechium edule (Chayote v1)
DescriptionChlorophyll A-B binding protein
Genome locationLG11:5555896..5563484
RNA-Seq ExpressionSed0008122
SyntenySed0008122
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0009579 - thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR022796 - Chlorophyll A-B binding protein
IPR023329 - Chlorophyll a/b binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008451793.1 PREDICTED: uncharacterized protein LOC103492970 isoform X1 [Cucumis melo]8.2e-5781.88Show/hide
Query:  ASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKF
        A+S +LILPINGGN L  S  LSFRH+HPSATFSR GWSRDQD G+STHRT+G AFRI    NVSP KDG IK+VIMVDPLEAKRMAAKEMEKIKAKEKF
Subjt:  ASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKF

Query:  KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ
        KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYF+ ++NFF++
Subjt:  KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

XP_022937783.1 uncharacterized protein LOC111444076 isoform X1 [Cucurbita moschata]4.2e-6184.46Show/hide
Query:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK
        +STALILPI+GGN       LSFRHTHPSATFSRWGW+RDQD GKSTHRT+G AFRILANPNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFK
Subjt:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK

Query:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ
        RRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLA Y AAV+NFFV+
Subjt:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

XP_022969695.1 uncharacterized protein LOC111468645 isoform X1 [Cucurbita maxima]4.2e-6185.14Show/hide
Query:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK
        +STALILPI+GGNR +SS  LSFRHTH SATFSRWGWSRD+D G STHRT+G AFRILANPNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFK
Subjt:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK

Query:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ
        RRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLA Y AAV+NFFV+
Subjt:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

XP_023538319.1 uncharacterized protein LOC111799137 isoform X1 [Cucurbita pepo subsp. pepo]2.5e-6184.46Show/hide
Query:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK
        +STALILPI+GGN       LSFRHTHPSATFSRWGW+RDQD GKSTHRT+G AFRILANPNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFK
Subjt:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK

Query:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ
        RRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLA Y AAV+NFFV+
Subjt:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

XP_038889814.1 uncharacterized protein LOC120079625 [Benincasa hispida]3.8e-5480.27Show/hide
Query:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK
        +ST+LILPI GGN L  S  LSFRHTHPSATFSR GWSRDQD G+STHRT+G AF+I    NVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFK
Subjt:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK

Query:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFV
        R+RQIEAINGAWAMIGLTAGLVIEGQTGKGILAQL  YF+ V+NFF+
Subjt:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFV

TrEMBL top hitse value%identityAlignment
A0A0A0LH95 Uncharacterized protein9.2e-5481.21Show/hide
Query:  ASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKF
        A+STALILPINGGN L  S  LSFRHT PSATFSR GWSR  DAG+ST RT+G AFRI    NVSPG+DG IK+VIMVDPLEAKRMAAKEMEKIKAKEKF
Subjt:  ASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKF

Query:  KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ
        KRRRQIEAINGAWAMIGLTAGLVIEG+TGKGILAQLADYF+ ++NFF++
Subjt:  KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

A0A1S3BSE0 uncharacterized protein LOC103492970 isoform X14.0e-5781.88Show/hide
Query:  ASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKF
        A+S +LILPINGGN L  S  LSFRH+HPSATFSR GWSRDQD G+STHRT+G AFRI    NVSP KDG IK+VIMVDPLEAKRMAAKEMEKIKAKEKF
Subjt:  ASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKF

Query:  KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ
        KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYF+ ++NFF++
Subjt:  KRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

A0A6J1DIT0 uncharacterized protein LOC1110208594.1e-5484.09Show/hide
Query:  SSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIG
        SS  LSFRH HP ATFSRWGW+RDQ  GK THRT+G AFRILANPNVSPGKDG +KEVIMVDPLEAKRMAAK+MEKIKAKEK KRRRQIEAINGAWAMIG
Subjt:  SSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIG

Query:  LTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ
        LTAGLVIEGQTGKGILAQL DYF  V++ FV+
Subjt:  LTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

A0A6J1FC77 uncharacterized protein LOC111444076 isoform X12.0e-6184.46Show/hide
Query:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK
        +STALILPI+GGN       LSFRHTHPSATFSRWGW+RDQD GKSTHRT+G AFRILANPNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFK
Subjt:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK

Query:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ
        RRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLA Y AAV+NFFV+
Subjt:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

A0A6J1I0N1 uncharacterized protein LOC111468645 isoform X12.0e-6185.14Show/hide
Query:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK
        +STALILPI+GGNR +SS  LSFRHTH SATFSRWGWSRD+D G STHRT+G AFRILANPNVSPGKD  IK+VIMVDPLEAKR+AAKEMEKIKAKEKFK
Subjt:  SSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFK

Query:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ
        RRRQIEAINGAWAMIGLTAGL++EGQTGKGILAQLA Y AAV+NFFV+
Subjt:  RRRQIEAINGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G28025.1 unknown protein1.8e-3059.84Show/hide
Query:  RHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVS----PGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA
        R   PS++  + G  R QDA    +R +    R+LANPNVS    PGK    KEVIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  
Subjt:  RHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVS----PGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTA

Query:  GLVIEGQTGKGILAQLADYFAAVMNFF
        GLVIE QTGKGILAQLA Y++AV++ F
Subjt:  GLVIEGQTGKGILAQLADYFAAVMNFF

AT4G28025.2 unknown protein.8.2e-3161.48Show/hide
Query:  SATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVS----PGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIE
        S++  R G  R QDA    +R +    R+LANPNVS    PGK    KEVIMVDPLEAKR+A+K+ME+IK +EK +RRR+IEAINGAWA+IGL  GLVIE
Subjt:  SATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVS----PGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAINGAWAMIGLTAGLVIE

Query:  GQTGKGILAQLADYFAAVMNFF
         QTGKGILAQLA Y++AV++ F
Subjt:  GQTGKGILAQLADYFAAVMNFF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTCCACTGCGCTGATTCTCCCCATCAATGGAGGAAACCGCCTTTCGTCTTCTCCACGCCTCTCTTTCCGCCATACCCATCCTTCTGCAACTTTCTCCAGGTG
GGGTTGGAGTAGGGATCAAGATGCAGGCAAAAGCACTCACAGAACGAAGGGTCTAGCGTTTCGAATCTTGGCTAACCCTAATGTTTCTCCTGGGAAAGATGGTTCAATTA
AGGAGGTGATTATGGTTGATCCTTTGGAAGCCAAACGAATGGCTGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGACGACGTCAGATAGAAGCGATA
AATGGAGCATGGGCAATGATTGGTCTCACGGCAGGGCTTGTCATCGAAGGTCAAACTGGAAAAGGAATTCTAGCACAGTTAGCCGACTACTTTGCTGCTGTCATGAACTT
CTTTGTACAATAG
mRNA sequenceShow/hide mRNA sequence
GGAGTCGATAGAATAATAGCTCAAGCGGCATCAATACACACTTAATGATTTATGGATCATAAGTTTAAGATTCAGGGATCATATACAAATAACCCAAGTCAAATCAGAAT
TAAGATATATTCGAGTGGCAAGGGAGCCATTACAAACCTGTCTCACTCTCTAGAAAATAAAAATGTGGATATGGGCATCTGAAATCTATAAATCAAAACCCCCCATAAAT
TTCTATATAAACATGGTTTGCTCAAGAAATGGATAAGGATTGTTCATGTGAAGAAGCTGCAGATTTTGGAAATGGCTTCTTCCACTGCGCTGATTCTCCCCATCAATGGA
GGAAACCGCCTTTCGTCTTCTCCACGCCTCTCTTTCCGCCATACCCATCCTTCTGCAACTTTCTCCAGGTGGGGTTGGAGTAGGGATCAAGATGCAGGCAAAAGCACTCA
CAGAACGAAGGGTCTAGCGTTTCGAATCTTGGCTAACCCTAATGTTTCTCCTGGGAAAGATGGTTCAATTAAGGAGGTGATTATGGTTGATCCTTTGGAAGCCAAACGAA
TGGCTGCAAAAGAAATGGAAAAGATCAAAGCAAAAGAGAAGTTCAAGAGACGACGTCAGATAGAAGCGATAAATGGAGCATGGGCAATGATTGGTCTCACGGCAGGGCTT
GTCATCGAAGGTCAAACTGGAAAAGGAATTCTAGCACAGTTAGCCGACTACTTTGCTGCTGTCATGAACTTCTTTGTACAATAGACATCTTCAATGGCAGAAGGGTAAGT
CCTTTAATGAAAGAATTATTCACTTCTCAACAATTGAAAGTTTAGTATGTTTGATATTTTTGAGCTAAAAAATCTTTCCATTGTAAGATTCTGTACTCTTCATTCTTTTT
TTTCTTTTCATGTTTGATTTCTTCACATTTCATACACAAAGTTAACATTTAATTGTGAAGCAGTGTATTCATATGGTTTTGCTTTTGCTTTGGCTGATTTTACTGCAATG
CAGTCAATATCCACTATTTAACCTTTTCTTTATACCAT
Protein sequenceShow/hide protein sequence
MASSTALILPINGGNRLSSSPRLSFRHTHPSATFSRWGWSRDQDAGKSTHRTKGLAFRILANPNVSPGKDGSIKEVIMVDPLEAKRMAAKEMEKIKAKEKFKRRRQIEAI
NGAWAMIGLTAGLVIEGQTGKGILAQLADYFAAVMNFFVQ