CuGenDBv2

Gene ID	Sed0008185
Organism	Sechium edule (Chayote v1)
Description	Nuclear factor related to kappa-B-binding protein
Genome location	LG05:40097105..40099309
RNA-Seq Expression	Sed0008185
Synteny	Sed0008185
Gene Ontology terms	GO:0031011 - Ino80 complex (cellular component)
InterPro domains	IPR024867 - Nuclear factor related to kappa-B-binding protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6570740.1 Nuclear factor related to kappa-B-binding protein, partial [Cucurbita argyrosperma subsp. sororia]

3.2e-64

86.62

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE YMLTLKELFT  NFHFGSPIKMLF+MLKGGLCEPRVALYRHGL FFQ RQHYH+LRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SF DE   GLETD+SDR+SGE FH+RFKDKK A+KM NFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

KAG7010587.1 Nuclear factor related to kappa-B-binding protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.2e-64

86.62

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE YMLTLKELFT  NFHFGSPIKMLF+MLKGGLCEPRVALYRHGL FFQ RQHYH+LRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SF DE   GLETD+SDR+SGE FH+RFKDKK A+KM NFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

XP_022943976.1 uncharacterized protein LOC111448544 [Cucurbita moschata]

3.2e-64

86.62

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE YMLTLKELFT  NFHFGSPIKMLF+MLKGGLCEPRVALYRHGL FFQ RQHYH+LRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SF DE   GLETD+SDR+SGE FH+RFKDKK A+KM NFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

XP_023511920.1 uncharacterized protein LOC111776788 [Cucurbita pepo subsp. pepo]

4.2e-64

86.62

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE YMLTLKELFT  NFHFGSPIKMLF+MLKGGLCEPRVALYRHGL FFQ RQHYH+LRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SF DE   GLETD+SDR+SGE FH+RFKDKK A+KM NFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

XP_038902696.1 uncharacterized protein LOC120089332 [Benincasa hispida]

6.5e-65

87.32

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE +MLTLKELFT SNFHFGSPIKMLFSMLKGGLCEPRVALYRHGL FFQ RQHYHLLRKHQNNMVS+LCQMRDAWLNCRGYSM+ERLRVLNLMRSQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SF+DE   GLETD+SDR+SGE FHRRFKDK  A+KMPNFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E4F3 uncharacterized protein LOC103501890 isoform X1

1.0e-63

85.92

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE +MLTLKELFT SNFHFGSP+KMLFSMLKGGLCEPRVALYR+GL FFQ RQHYHLLRKHQNNMVS+LCQMRDAWLNCRGYSM+ERLRVLNLMRSQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SFNDE   GLETD+SDR+SGE F RRFKDK  A+KMPNFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

A0A5A7T107 Nfrkb, putative isoform 1

1.0e-63

85.92

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE +MLTLKELFT SNFHFGSP+KMLFSMLKGGLCEPRVALYR+GL FFQ RQHYHLLRKHQNNMVS+LCQMRDAWLNCRGYSM+ERLRVLNLMRSQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SFNDE   GLETD+SDR+SGE F RRFKDK  A+KMPNFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

A0A6J1FT63 uncharacterized protein LOC111448544

1.6e-64

86.62

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE YMLTLKELFT  NFHFGSPIKMLF+MLKGGLCEPRVALYRHGL FFQ RQHYH+LRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SF DE   GLETD+SDR+SGE FH+RFKDKK A+KM NFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

A0A6J1JEX1 uncharacterized protein LOC111484415

3.5e-64

85.92

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE YMLTLKELFT  NFHFGSPIKMLF+MLKGGLCEPRVALYRHGL FFQ RQHYH+LRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLM+SQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SF DE   GLETD+SDR+SGE FH+RFKDKK A+KM NFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

A0A6J1L2M9 uncharacterized protein LOC111499854

1.9e-62

84.51

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        MDQE YMLTLKELFT SNFHFGSPIKMLFSMLKGGLCEPRVALYRHGL FFQ RQHYHLLRKHQNNM+S LC MRD WLNCRGYSMEERLR+LNLMRSQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY
        SF+ E ++GLETD+SDRVSGE F RRFKDKK A+K+ NFS+Y
Subjt:  SFNDEMVNGLETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTY

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G02290.1 unknown protein

1.2e-08

30.38

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWL
        MD + + LT++EL   +N +FG+P    +  L GGL  P+VA ++ G+ F + R++Y+ L+ +   ++    +M+  W+
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWL

AT3G45830.1 unknown protein

2.2e-34

52.55

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Query:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK
        +DQ  +M TLKELF   NFHFGSP+K LF MLKGG CEPR  LY  G + F   +HYH LRK+ N+MV NLCQ RDAW +C+GYS++E+LRVLN+++SQK
Subjt:  MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQK

Query:  SFNDEMVNGLETDTS--DRVSGEEFHRRFKDKKTAAK
        +   E  +  E D+S  D    + + R+ KD+K+  K
Subjt:  SFNDEMVNGLETDTS--DRVSGEEFHRRFKDKKTAAK

Sequences

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CDS sequence

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ATGGACCAAGAGATATATATGCTTACACTCAAAGAGCTTTTTACCGTTAGCAACTTCCATTTTGGAAGCCCAATAAAGATGTTGTTTAGCATGCTGAAGGGGGGTTTATG
TGAGCCCAGAGTTGCCCTTTATCGTCATGGTCTCAACTTTTTTCAATGGCGGCAACACTATCATCTTCTGAGGAAGCATCAGAACAATATGGTTAGCAACCTATGTCAGA
TGAGAGATGCTTGGCTTAACTGTAGAGGATACAGCATGGAAGAGAGGCTTCGTGTCTTAAATCTTATGAGGAGTCAAAAAAGTTTCAACGATGAGATGGTCAATGGTTTA
GAAACTGATACGTCGGATAGAGTTTCAGGTGAAGAATTTCATAGAAGGTTTAAGGACAAGAAAACTGCTGCCAAAATGCCCAACTTTTCTACATATATGTTGTGGAAGAT
GTATCTGATACACAAGTTAATCAAGTTGTAA

mRNA sequence

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TGTAAATGGAAGAGAGAGTGAGTCACTGGTGGCTGACTCGGAATGGCAAATGGCGAGTTGACTCAGTGGTCTGTGGTGTCTGTGTTGGGTTCCAGTTCCGCTCACAGTTT
CTCTCTCTTCTGCCCTTTTTCGTCTTTTCCCACTCTTCTTCTTCCTTGCAATCCGACGCTCCATTTCCATCCACGTCATCATCGTCTTCTTCAATCTTCCTCTTCTTCTC
CTTAAACCAATCTCTGGCTAGGGTTTCTATTTCCTTTCCTTAATGTTTTCGCGATTTCTCTTCTGGGTTTTACTTTTCGTGCATTGCGATTTCCGCTACGTTCTCTACAA
GTTCATCCAATCGAGAATGAGGGTTTAGGTCGACTTGGTTATGTTCCGGTTTTGGAGTTGTTGGAATTTGATAGTCGGAGGGGTTAAATTCGGTTTTTTGTTAATTTTGT
GGTTGATTTGGGGTTTTCATGTTTCAATATCAATATCGCTATTGAGAAGAACAATTTTAAGGTTTCGAGGTTTGATTATGAGTTTTCACCTGGGAGTACTAAGAGCAGCA
TTTCCAGTAATGATGAAGATGAGCTCCAAAGACATGCCTCTGCTGATGATGATGATGAACAGTTTGCTGATGCAGATTCTGGGGCGGGGTCCGATGATTATGATACCCTC
GAATGGGGAGAGTGGAGTTTTGCCACCTTGATAATCAGACTTGTAGTATTCCTCTTGAGCTGTATGATCTTTCGGGTTTCGAAGATATATTGTCTGTTGATGTGTGGAAT
GGCTGCCTAACTGAACAGGACCGATTTAGCCTCTCTAGATATGGACCAAGAGATATATATGCTTACACTCAAAGAGCTTTTTACCGTTAGCAACTTCCATTTTGGAAGCC
CAATAAAGATGTTGTTTAGCATGCTGAAGGGGGGTTTATGTGAGCCCAGAGTTGCCCTTTATCGTCATGGTCTCAACTTTTTTCAATGGCGGCAACACTATCATCTTCTG
AGGAAGCATCAGAACAATATGGTTAGCAACCTATGTCAGATGAGAGATGCTTGGCTTAACTGTAGAGGATACAGCATGGAAGAGAGGCTTCGTGTCTTAAATCTTATGAG
GAGTCAAAAAAGTTTCAACGATGAGATGGTCAATGGTTTAGAAACTGATACGTCGGATAGAGTTTCAGGTGAAGAATTTCATAGAAGGTTTAAGGACAAGAAAACTGCTG
CCAAAATGCCCAACTTTTCTACATATATGTTGTGGAAGATGTATCTGATACACAAGTTAATCAAGTTGTAACTGGTGCATTGGACAGATTGCATTATGAACGTGATCCTT
GTGTCCAATTTGATGGTGAAAGAAAACTGTGGGTTTATTTGCATATAGAACGCGAAGAAGAAGATTTCAGAGGACGATGGTACTTCATCTACTAAGAAATGGAAGAGGCC
TAAAAAAGATGCTGTTGAGCAATCATCTAATCTTGGACTTGTGACAGTAGCTTACCATGCATCTGGAGAACATACTAGATATGACGTTTGCTCTGATCTTAACACAGAAC
CCCCACGTGATGATGATGATGTTAAAGGAATGGAACCAATTTATGGTGATGTGAGGCAAAATCTGGAGCATGGCATAGATAACAATCATGGGTCTGATCATGATGAGATT
TCTCAAGTTCCACAGGTTATCGAAGTTTCTAATCCTATGGAAGAGACCAAGTTGATATGACAAGAAAATTCCACTAATGAAGATTTTGATGATGAAGCATTTGGTAGACA
AAAGCCGGTTGGATTCCTAACTGCGAGCATATCATAAAGAGTATTGCAGGTAGTAGTTGGTTTGGTTTGTTATTTCCTTTTCGAATTTGGATGTCATACTCTTATATGAA
TTAGGGTGTCTTTGATAATTTTACGGAGTTTTCACTGTTTAGTTCCAGTAATCAAGCTAGGCTCTTTGTTGGCTATTCATAGATCTGGAGTTCTCTTCTATTGCTAATTT
AGCTGCCTTCTTTCTTTTGTAGCTCTTTCTAAAGCTATATCCTTTACTAAGGCTATGGCTCCCTTGGATTGAATATTTGTCCTTCTAACCCTAAATCCTAATATTTGCCT
TTTACCTGTTAAACATTGT

Protein sequence

Show/hide protein sequence

MDQEIYMLTLKELFTVSNFHFGSPIKMLFSMLKGGLCEPRVALYRHGLNFFQWRQHYHLLRKHQNNMVSNLCQMRDAWLNCRGYSMEERLRVLNLMRSQKSFNDEMVNGL
ETDTSDRVSGEEFHRRFKDKKTAAKMPNFSTYMLWKMYLIHKLIKL

Sed0008185 (gene) of Chayote v1 genome