; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0008232 (gene) of Chayote v1 genome

Gene IDSed0008232
OrganismSechium edule (Chayote v1)
DescriptionSWIB domain-containing protein
Genome locationLG04:35601433..35603753
RNA-Seq ExpressionSed0008232
SyntenySed0008232
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR003121 - SWIB/MDM2 domain
IPR019835 - SWIB domain
IPR036885 - SWIB/MDM2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593744.1 hypothetical protein SDJN03_13220, partial [Cucurbita argyrosperma subsp. sororia]4.0e-3966.44Show/hide
Query:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK
        MAS L+NGTR F          KST+QAYSSAAA+S KG++KAS    S ++SEAG K       G+ KS +VSPALA  LG SESSR++AVKQIWS+IK
Subjt:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK

Query:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS
        LNNLQNP +KRQINCDEKLKA+FDGRE VGFLEIGK L+PHFVKSS
Subjt:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS

KAG6593745.1 hypothetical protein SDJN03_13221, partial [Cucurbita argyrosperma subsp. sororia]2.0e-3866.44Show/hide
Query:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK
        MAS L+NGTR F          KST+QAYSSAAA+S KG+LKAS    S ++SEAG K       G+ KS +VSPALA  LG SESSR +AVKQIWS+IK
Subjt:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK

Query:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS
        LNNLQNP +KRQINCDEKLKA+FDGRE VG LEIGK L+PHFVKSS
Subjt:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS

XP_023000110.1 upstream activation factor subunit spp27-like [Cucurbita maxima]4.0e-3967.12Show/hide
Query:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK
        MAS L+NGTR F          KST+QAYSSAAA+S KG+LKAS    S ++SEAG K       G+FKS +VSPALA  LG SESSRS+AVKQIWS+IK
Subjt:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK

Query:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS
        LN+LQNP +KRQINCDEKLKA+FDGRE VG LEIGK L+PHFVKSS
Subjt:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS

XP_023000111.1 upstream activation factor subunit spp27-like [Cucurbita maxima]8.9e-3966.44Show/hide
Query:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK
        MAS L+NGTR F          KST+QAYSSAAA+S KG+LKAS    + ++SEAG K       G+FKS +VSPALA  LG SESSRS+AVKQIWS+IK
Subjt:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK

Query:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS
        LN+LQNP +KRQINCDEKLKA+FDGRE VG LEIGK L+PHFVKSS
Subjt:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS

XP_038906873.1 upstream activation factor subunit spp27-like [Benincasa hispida]8.0e-4069.29Show/hide
Query:  NGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQN
        NGTRFF          KST+QAYSS  A+S+KGKLKAS+   SG++S AG K      +G+FKSF VSPALA  LG SE+SRS+AVKQIW++IKLNNLQ+
Subjt:  NGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQN

Query:  PGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS
        P DKRQINCDEKLKA+FDGREKVGFLEIGK LTPHFVKSS
Subjt:  PGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS

TrEMBL top hitse value%identityAlignment
A0A0A0KCY9 SWIB domain-containing protein6.6e-3260Show/hide
Query:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAG----AKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK
        MAS LSNGTRFF          KST+QAYSS   +SSK  LK S+   SG++S+      A P  GL K+ +VSP LA  LG+SE +R++AVKQIW +IK
Subjt:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAG----AKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK

Query:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKS
        LNNLQNP DKRQI CD KLKA+F GREKVG LEI KFL+ HFVKS
Subjt:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKS

A0A1S3CBA0 protein TRI1-like2.9e-3562.76Show/hide
Query:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAK----PPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK
        MAS LSNGTRFF          K T+QAYSS  A+SSK KLK  S   SG++S+A  K       G+ KS +VSP LA  LG+SE SR+DA+KQIWS+IK
Subjt:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAK----PPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK

Query:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKS
        LNNLQN  DKRQINCD KLKA+F GREKVG LEI KFL+PHFVKS
Subjt:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKS

A0A5D3DMJ2 Protein TRI1-like2.9e-3562.76Show/hide
Query:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAK----PPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK
        MAS LSNGTRFF          K T+QAYSS  A+SSK KLK  S   SG++S+A  K       G+ KS +VSP LA  LG+SE SR+DA+KQIWS+IK
Subjt:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAK----PPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK

Query:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKS
        LNNLQN  DKRQINCD KLKA+F GREKVG LEI KFL+PHFVKS
Subjt:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKS

A0A6J1KEZ2 upstream activation factor subunit spp27-like4.3e-3966.44Show/hide
Query:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK
        MAS L+NGTR F          KST+QAYSSAAA+S KG+LKAS    + ++SEAG K       G+FKS +VSPALA  LG SESSRS+AVKQIWS+IK
Subjt:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK

Query:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS
        LN+LQNP +KRQINCDEKLKA+FDGRE VG LEIGK L+PHFVKSS
Subjt:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS

A0A6J1KHF5 upstream activation factor subunit spp27-like1.9e-3967.12Show/hide
Query:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK
        MAS L+NGTR F          KST+QAYSSAAA+S KG+LKAS    S ++SEAG K       G+FKS +VSPALA  LG SESSRS+AVKQIWS+IK
Subjt:  MASRLSNGTRFF----------KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP----PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIK

Query:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS
        LN+LQNP +KRQINCDEKLKA+FDGRE VG LEIGK L+PHFVKSS
Subjt:  LNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKSS

SwissProt top hitse value%identityAlignment
O74503 Upstream activation factor subunit spp276.4e-0834.15Show/hide
Query:  SRLSNGTRFFKSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCD
        +R + G R  ++ ++     A  + K K +    GG  +R++  A  P  L K  ++SP LA  LG  + SR   VK++W +IK ++LQ+P DKR I CD
Subjt:  SRLSNGTRFFKSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCD

Query:  EKLKALFDGREKVGFLEIGKFLT
        +KLK++F+  + +    + K+LT
Subjt:  EKLKALFDGREKVGFLEIGKFLT

Q05024 Protein TRI14.2e-0735.24Show/hide
Query:  ISSKGKLKASSGGGSGERSEAGAKPPSGLFKSFRV--SPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGK
        + S  K K  S   S  + +    P S      +V  S  L   LG  E  R+  VK IW +IK ++LQNP D+R+I CDEK++ +F   +K+    + K
Subjt:  ISSKGKLKASSGGGSGERSEAGAKPPSGLFKSFRV--SPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGK

Query:  FLTPH
         LT H
Subjt:  FLTPH

Q08747 Upstream activation factor subunit UAF302.6e-0940.28Show/hide
Query:  VSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVK
        +S +LASLLG  E +R++ V+++W++IK +NLQNP +K++I CDEKL+ +    +     E+ K L  H  +
Subjt:  VSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVK

Q6STE5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 31.3e-0540.58Show/hide
Query:  FRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLT
        F++ P LA LLG    SRS  V+ +W ++K N LQ+  DK  IN D+  + +FD   ++ F EI + LT
Subjt:  FRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLT

Q9P7S3 SWI/SNF and RSC complexes subunit ssr32.7e-0642.59Show/hide
Query:  FRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFD
        +++S A A++LG  E +R D V  +W +IK + LQ+  +KR INCD+ L+ LF+
Subjt:  FRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFD

Arabidopsis top hitse value%identityAlignment
AT1G31760.1 SWIB/MDM2 domain superfamily protein5.2e-2153.75Show/hide
Query:  GLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKS
        G+FK+  VS  LAS  G  E +R  A+K++W ++KL+NLQNP +K++I+CD+KLK +FDG++KVG  EI K L+PHF KS
Subjt:  GLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFVKS

AT2G14880.1 SWIB/MDM2 domain superfamily protein2.3e-1639.13Show/hide
Query:  TSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREK
        +S  ++S  A   +     +S   S E +    + P G+ K   VSP +  ++   E +R+ A+K+IW++IK ++LQ+P +KR+I CDEKLK +F+GR++
Subjt:  TSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREK

Query:  VGFLEIGKFLTPHFV
        VGFLEI K + PHF+
Subjt:  VGFLEIGKFLTPHFV

AT2G35605.1 SWIB/MDM2 domain superfamily protein4.4e-2048.54Show/hide
Query:  KLKASSGGGSGERSEAGAKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFV
        K  +S+G  +G +        +G+ K   VS  LA+ +G +E SR+ AVK+IW +IKLNNLQNP +KR+I CDE+LK +F G++ VGFLEI K L+ HF 
Subjt:  KLKASSGGGSGERSEAGAKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFV

Query:  KSS
        KS+
Subjt:  KSS

AT3G03590.1 SWIB/MDM2 domain superfamily protein5.6e-2347.15Show/hide
Query:  KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP---PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALF
        ++TS   S+ +      K KA +      +S++ AK     +G+FK   VSP LA  LG  E+SR+DA+K IW++IK ++LQNP DKR+I CDE LK +F
Subjt:  KSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKP---PSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALF

Query:  DGREKVGFLEIGKFLTPHFVKSS
        +G++KVGFLEI K L+PHFVK++
Subjt:  DGREKVGFLEIGKFLTPHFVKSS

AT4G34290.1 SWIB/MDM2 domain superfamily protein1.0e-1642.27Show/hide
Query:  ASSGGGSGERSEAGAKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFV
        +++   S   +    + P G+ K   VS A+  ++G  E  R+ A+K+IW++IK ++LQ+P +KR I CDEKLK +F+G+E+VGFLEI K + PHF+
Subjt:  ASSGGGSGERSEAGAKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFDGREKVGFLEIGKFLTPHFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCAAGGCTCAGCAATGGAACCAGATTTTTCAAATCCACCTCTCAAGCTTACTCTTCCGCTGCTGCGATCTCATCCAAGGGGAAGCTCAAAGCTTCGAGTGGCGG
CGGTTCCGGCGAAAGATCCGAAGCCGGAGCGAAGCCTCCGTCGGGGCTTTTTAAGTCCTTCCGAGTTTCTCCGGCTCTCGCTTCCCTCCTCGGCAGGTCCGAGTCCTCGC
GTTCTGACGCCGTCAAGCAAATATGGTCACACATCAAGCTCAATAACCTCCAGAACCCAGGTGATAAGAGGCAGATCAATTGTGATGAAAAGCTTAAGGCTCTATTTGAT
GGAAGAGAGAAAGTAGGGTTCTTAGAAATTGGAAAATTTCTAACCCCTCATTTTGTGAAGTCTAGTTAA
mRNA sequenceShow/hide mRNA sequence
CCCAGCGTCGTCTTCCTCAGAGAGCAAAATGGCGTCAAGGCTCAGCAATGGAACCAGATTTTTCAAATCCACCTCTCAAGCTTACTCTTCCGCTGCTGCGATCTCATCCA
AGGGGAAGCTCAAAGCTTCGAGTGGCGGCGGTTCCGGCGAAAGATCCGAAGCCGGAGCGAAGCCTCCGTCGGGGCTTTTTAAGTCCTTCCGAGTTTCTCCGGCTCTCGCT
TCCCTCCTCGGCAGGTCCGAGTCCTCGCGTTCTGACGCCGTCAAGCAAATATGGTCACACATCAAGCTCAATAACCTCCAGAACCCAGGTGATAAGAGGCAGATCAATTG
TGATGAAAAGCTTAAGGCTCTATTTGATGGAAGAGAGAAAGTAGGGTTCTTAGAAATTGGAAAATTTCTAACCCCTCATTTTGTGAAGTCTAGTTAACCATCAAACTTTC
AGAACATGCATTGACTTGGTTGGTTTAACAGATTTGTCTTCTAAATCCTTGATGATATTTTGTTGTGTTTGGCTAATCATATGACTTTATTGTACTCTTTGATTTGCCTC
TTATTACAGAAAATAGAGCCACTTTTGTAGCTCTTATAAATGGTTTACATTCCATCAATGTTGGTTTTCCTTGGAAATAGACATGAAAAATCCACAAACTATAGTTCCAC
AG
Protein sequenceShow/hide protein sequence
MASRLSNGTRFFKSTSQAYSSAAAISSKGKLKASSGGGSGERSEAGAKPPSGLFKSFRVSPALASLLGRSESSRSDAVKQIWSHIKLNNLQNPGDKRQINCDEKLKALFD
GREKVGFLEIGKFLTPHFVKSS