CuGenDBv2

Gene ID	Sed0008236
Organism	Sechium edule (Chayote v1)
Description	Helicase C-terminal domain-containing protein
Genome location	LG09:10415515..10415822
RNA-Seq Expression	Sed0008236
Synteny	Sed0008236
Gene Ontology terms	NA
InterPro domains	IPR040381 - Uncharacterized protein At4g14450-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6593848.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.2e-14

51.89

Show/hide

Query:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS-------------------RSDPVDPPVLTKWHHPAA
        MA+  + P   AA   QPSRLQRRAPASL+I+RSDWK  IPLL+PLVSP SSP +  N   DS                    S+P  PPV  KW HPAA
Subjt:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS-------------------RSDPVDPPVLTKWHHPAA

Query:  PFHYGS
        PFHY S
Subjt:  PFHYGS

XP_004142258.1 uncharacterized protein At4g14450, chloroplastic [Cucumis sativus]

4.2e-14

54.63

Show/hide

Query:  DSKSPISAAADQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPD--TLNRPLDSR------------------------SDPVDPPVLTKWHHP
        DS  P S AA  PSRLQRRAPASL+INRSDWK  IPLL+PLVSPSSSP D  + + P DSR                        SDP   PV  KW HP
Subjt:  DSKSPISAAADQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPD--TLNRPLDSR------------------------SDPVDPPVLTKWHHP

Query:  AAPFHYGS
        AAPFHY S
Subjt:  AAPFHYGS

XP_022930471.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita moschata]

1.4e-14

53.4

Show/hide

Query:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS----------------RSDPVDPPVLTKWHHPAAPFH
        MA+  + P   AA   QPSRLQRRAPASL+I+RSDWK  IPLL+PLVSP SSP +  N   DS                 S+P  PPV  KW HPAAPFH
Subjt:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS----------------RSDPVDPPVLTKWHHPAAPFH

Query:  YGS
        Y S
Subjt:  YGS

XP_023515028.1 uncharacterized protein At4g14450, chloroplastic-like [Cucurbita pepo subsp. pepo]

1.9e-14

52.94

Show/hide

Query:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS---------------RSDPVDPPVLTKWHHPAAPFHY
        MA+  + P + A+   QPSRLQRRAPASL+I+RSDWK  IPLL+PLVSP SSP +  N   DS                S+P  PPV  KW HPAAPFHY
Subjt:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS---------------RSDPVDPPVLTKWHHPAAPFHY

Query:  GS
         S
Subjt:  GS

XP_038875425.1 uncharacterized protein At4g14450, chloroplastic-like [Benincasa hispida]

3.8e-15

55.88

Show/hide

Query:  MADDSKSPISAAA---DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDSR--------------SDPVDPPVLTKWHHPAAPFHY
        MAD  +    A+     QPSRLQRRAPASL+INRSDWK  IPLL+PLVSP SSP D  N   DSR              S+P  PPV  KW HPAAPFHY
Subjt:  MADDSKSPISAAA---DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDSR--------------SDPVDPPVLTKWHHPAAPFHY

Query:  GS
         S
Subjt:  GS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLJ8 Uncharacterized protein

2.0e-14

54.63

Show/hide

Query:  DSKSPISAAADQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPD--TLNRPLDSR------------------------SDPVDPPVLTKWHHP
        DS  P S AA  PSRLQRRAPASL+INRSDWK  IPLL+PLVSPSSSP D  + + P DSR                        SDP   PV  KW HP
Subjt:  DSKSPISAAADQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPD--TLNRPLDSR------------------------SDPVDPPVLTKWHHP

Query:  AAPFHYGS
        AAPFHY S
Subjt:  AAPFHYGS

A0A1S3CDB1 uncharacterized protein At4g14450, chloroplastic-like

1.6e-11

49.5

Show/hide

Query:  QPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDSRS------------------------------DPVDPPVLTKWHHPAAPFHYG
        QPSRLQRRAPASL+INRSDWK  IPLL+PLVSP SSP D  N   DSR                               +    PV  KW HPAAPFHY 
Subjt:  QPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDSRS------------------------------DPVDPPVLTKWHHPAAPFHYG

Query:  S
        S
Subjt:  S

A0A6J1CA35 uncharacterized protein At4g14450, chloroplastic-like

2.2e-13

54.74

Show/hide

Query:  MADDSKSPISAAA---DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPS-------SSPPDTLNRPLDSRSDPVDPPVLTKWHHPAAPFHYGS
        MAD  +    A +    QPSRLQRRAPASL+I+RSDWK  IPLL+PLVSPS       S  P T ++  D    PV  PV  KW HPAAPFHY S
Subjt:  MADDSKSPISAAA---DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPS-------SSPPDTLNRPLDSRSDPVDPPVLTKWHHPAAPFHYGS

A0A6J1ER11 uncharacterized protein At4g14450, chloroplastic-like

6.9e-15

53.4

Show/hide

Query:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS----------------RSDPVDPPVLTKWHHPAAPFH
        MA+  + P   AA   QPSRLQRRAPASL+I+RSDWK  IPLL+PLVSP SSP +  N   DS                 S+P  PPV  KW HPAAPFH
Subjt:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS----------------RSDPVDPPVLTKWHHPAAPFH

Query:  YGS
        Y S
Subjt:  YGS

A0A6J1KKB8 uncharacterized protein At4g14450, chloroplastic-like

3.4e-14

52.38

Show/hide

Query:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS------------------RSDPVDPPVLTKWHHPAAP
        MA+  +    AAA   QPSRLQRRAPASL+I+RSDWK  IPLL+PLVSP SSP +  N   DS                   S+P  PPV  KW HPAAP
Subjt:  MADDSKSPISAAA--DQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDS------------------RSDPVDPPVLTKWHHPAAP

Query:  FHYGS
        FHY S
Subjt:  FHYGS

SwissProt top hits

e value

%identity

Alignment

Q6NN02 Uncharacterized protein At4g14450, chloroplastic

1.1e-04

35.58

Show/hide

Query:  MADDSKSPISAAAD---QPSRLQRRAPASL--EINRSDWKPTIPLLTPLVSPSSS-------PPDTLNRPLDSRSDPVDPPVLTKWHHPAAPFHYGSTTT
        MA   +   S+AA    Q S+LQRRAP+ +    + S+W   IPLL+PL    +S       PP      +    +    PV  KW HPA+PF Y  TT 
Subjt:  MADDSKSPISAAAD---QPSRLQRRAPASL--EINRSDWKPTIPLLTPLVSPSSS-------PPDTLNRPLDSRSDPVDPPVLTKWHHPAAPFHYGSTTT

Query:  ISAF
        +  F
Subjt:  ISAF

Arabidopsis top hits

e value

%identity

Alignment

AT1G04330.1 unknown protein

3.9e-10

41.86

Show/hide

Query:  MADDSKSPISAAADQPSRLQRRAPASLEIN--RSDWKPTIPLLTPLVSPSSSPPDTLNRPLDSRSDPVD-PPVLTKWHHPAAPFHY
        M+  +++   +   + SRLQRRAP  L+IN   ++WK  IPLL+P  SP   PP  + R         + PPV  KW HPAAPF+Y
Subjt:  MADDSKSPISAAADQPSRLQRRAPASLEIN--RSDWKPTIPLLTPLVSPSSSPPDTLNRPLDSRSDPVD-PPVLTKWHHPAAPFHY

AT3G23170.1 unknown protein

8.1e-08

41.38

Show/hide

Query:  QPSRLQRRAPASLEI----NRSDWKPTIPLLTPL-VSPSSSPPDTLNRPLDSRSDPV----DPPVLTKWHHPAAPFHYGSTTTISAF
        QPSRL +R PA   +      ++W   IPLL+PL +SP SSP D    P++            PV  KW HPAAPF+Y S+T +  F
Subjt:  QPSRLQRRAPASLEI----NRSDWKPTIPLLTPL-VSPSSSPPDTLNRPLDSRSDPV----DPPVLTKWHHPAAPFHYGSTTTISAF

AT4G14450.1 unknown protein

7.6e-06

35.58

Show/hide

Query:  MADDSKSPISAAAD---QPSRLQRRAPASL--EINRSDWKPTIPLLTPLVSPSSS-------PPDTLNRPLDSRSDPVDPPVLTKWHHPAAPFHYGSTTT
        MA   +   S+AA    Q S+LQRRAP+ +    + S+W   IPLL+PL    +S       PP      +    +    PV  KW HPA+PF Y  TT 
Subjt:  MADDSKSPISAAAD---QPSRLQRRAPASL--EINRSDWKPTIPLLTPLVSPSSS-------PPDTLNRPLDSRSDPVDPPVLTKWHHPAAPFHYGSTTT

Query:  ISAF
        +  F
Subjt:  ISAF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGACGACTCAAAGAGCCCAATCTCCGCCGCCGCCGATCAGCCGAGCCGACTCCAGCGCCGAGCTCCAGCCTCCCTCGAAATCAACCGCTCCGATTGGAAGCCGAC
CATCCCTCTCCTAACGCCGCTGGTCTCTCCCTCCTCCTCGCCGCCCGACACTCTGAACCGCCCCCTCGATTCCCGATCCGACCCGGTTGACCCGCCGGTTCTCACCAAAT
GGCACCACCCGGCCGCGCCTTTCCATTACGGTTCCACTACTACAATTTCAGCTTTCTATGACAATTAA

mRNA sequence

Show/hide mRNA sequence

CTAATAATAATCCCTCTTTCATGGCCGACGACTCAAAGAGCCCAATCTCCGCCGCCGCCGATCAGCCGAGCCGACTCCAGCGCCGAGCTCCAGCCTCCCTCGAAATCAAC
CGCTCCGATTGGAAGCCGACCATCCCTCTCCTAACGCCGCTGGTCTCTCCCTCCTCCTCGCCGCCCGACACTCTGAACCGCCCCCTCGATTCCCGATCCGACCCGGTTGA
CCCGCCGGTTCTCACCAAATGGCACCACCCGGCCGCGCCTTTCCATTACGGTTCCACTACTACAATTTCAGCTTTCTATGACAATTAA

Protein sequence

Show/hide protein sequence

MADDSKSPISAAADQPSRLQRRAPASLEINRSDWKPTIPLLTPLVSPSSSPPDTLNRPLDSRSDPVDPPVLTKWHHPAAPFHYGSTTTISAFYDN

Sed0008236 (gene) of Chayote v1 genome