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Sed0008262 (gene) of Chayote v1 genome

Gene IDSed0008262
OrganismSechium edule (Chayote v1)
DescriptionMediator of RNA polymerase II transcription subunit 26, putative
Genome locationLG10:6424655..6425766
RNA-Seq ExpressionSed0008262
SyntenySed0008262
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143470.1 uncharacterized protein LOC101209867 [Cucumis sativus]1.5e-3348.81Show/hide
Query:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----
        TK+ LLFL LVLF +  LLC  A+S S N +     RRILES                      K   AP QSSKNQT          NKT+L K     
Subjt:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----

Query:  ------------------KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWID
                           KLNSTSKS NSTK T +SAKK SD LK + PKNKT TPN S         K NK QK+EKK ++EKPKK         W+D
Subjt:  ------------------KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWID

Query:  G----DFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV
             D +SEFRDL TKFQKT+IPDLA ISTTSKAYI KANKQMTMGFKP+V
Subjt:  G----DFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV

XP_008440602.1 PREDICTED: uncharacterized protein LOC103484976 [Cucumis melo]1.8e-3650.79Show/hide
Query:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----
        TK+ LLFL LVLF +  LLC  A+S S N +LF   RRILES                      K   AP QSSKNQT          NKT+L K     
Subjt:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----

Query:  ------------KKLNS------TSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWI-
                    KKLNS      TSKS NSTK TS+SAKK SD LK++ PKNKT TPN S         K NK QK+EKK ++EKPKK         W+ 
Subjt:  ------------KKLNS------TSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWI-

Query:  ---DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV
           D D +SEFRDLPTKFQKT+IPDLA ISTTSKAYI KANKQMTMGFKP+V
Subjt:  ---DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV

XP_022963115.1 uncharacterized protein LOC111463417 [Cucurbita moschata]1.1e-3352.38Show/hide
Query:  PTKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES-KSTNAPK-----------QSSKNQT----------NKTILSK--------------
        PTK+F+LFL L+LF A SLLC  A+S S N +L    RRILES +    PK           +S KNQT          NKTI+ K              
Subjt:  PTKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES-KSTNAPK-----------QSSKNQT----------NKTILSK--------------

Query:  ----KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNP----SKPNKPQKTEKKQSQEKPKKL-----DWID----GDFISEFRDLPTKFQKT
            KKLNSTSKS NSTK TS  AKK SD LKL+ PKNKT T        KPNK QK + KQSQEKPKK      +WID     DF+S+FRDLP K  K 
Subjt:  ----KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNP----SKPNKPQKTEKKQSQEKPKKL-----DWID----GDFISEFRDLPTKFQKT

Query:  IIPDLATISTTSKAYIKKANKQMTMGFKPVV
        +IPDLA IST+SKAYI KANKQMTMGFKP+V
Subjt:  IIPDLATISTTSKAYIKKANKQMTMGFKPVV

XP_023544541.1 uncharacterized protein LOC111804090 [Cucurbita pepo subsp. pepo]2.9e-3449.8Show/hide
Query:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLF--PIARRILES-----------KSTNA------------PKQSSKNQT----------NKTILSK--
        +K+F+LFL LVLF A SLLC  AQS SPN  LF     RR+LE+           KST+A            P QSSKNQT          NKT+L K  
Subjt:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLF--PIARRILES-----------KSTNA------------PKQSSKNQT----------NKTILSK--

Query:  -------------------------KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPSKPNKP---QKTEKKQSQEKPK-------KLDWI
                                  KLNSTSKS NSTK TS SAKK SD LKL+ PKNKT TPN +K ++     K+E K  QEKPK       K  W+
Subjt:  -------------------------KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPSKPNKP---QKTEKKQSQEKPK-------KLDWI

Query:  ----DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV
            D D +SEFRDL TKFQKT+IPDLA ISTTSKAYI KANKQMTMGFKP+V
Subjt:  ----DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV

XP_038882955.1 uncharacterized protein LOC120074049 [Benincasa hispida]1.0e-3953.41Show/hide
Query:  PTKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES---------KSTNA------------PKQSSKNQT----------NKTILSK-----
        PTK+FLLFL  VLF A  LLC +A+S SPN +LF   RRILES         KS++A            P QSSKNQT          NKT+L K     
Subjt:  PTKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES---------KSTNA------------PKQSSKNQT----------NKTILSK-----

Query:  -------------KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQ--EKPKKL-------DWI----
                     KKLNSTSKS NSTK TS SAKK SD  KL+ PKNK  TPN S         KPNK QK+EKKQ+Q  EKPKK         W+    
Subjt:  -------------KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQ--EKPKKL-------DWI----

Query:  DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV
        D D +SEFRDLPTKFQKT+IPDLA ISTTSKAY+ KANKQMTMGFKP+V
Subjt:  DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV

TrEMBL top hitse value%identityAlignment
A0A0A0KG97 Uncharacterized protein7.0e-3448.81Show/hide
Query:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----
        TK+ LLFL LVLF +  LLC  A+S S N +     RRILES                      K   AP QSSKNQT          NKT+L K     
Subjt:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----

Query:  ------------------KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWID
                           KLNSTSKS NSTK T +SAKK SD LK + PKNKT TPN S         K NK QK+EKK ++EKPKK         W+D
Subjt:  ------------------KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWID

Query:  G----DFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV
             D +SEFRDL TKFQKT+IPDLA ISTTSKAYI KANKQMTMGFKP+V
Subjt:  G----DFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV

A0A1S3B126 uncharacterized protein LOC1034849768.9e-3750.79Show/hide
Query:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----
        TK+ LLFL LVLF +  LLC  A+S S N +LF   RRILES                      K   AP QSSKNQT          NKT+L K     
Subjt:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----

Query:  ------------KKLNS------TSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWI-
                    KKLNS      TSKS NSTK TS+SAKK SD LK++ PKNKT TPN S         K NK QK+EKK ++EKPKK         W+ 
Subjt:  ------------KKLNS------TSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWI-

Query:  ---DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV
           D D +SEFRDLPTKFQKT+IPDLA ISTTSKAYI KANKQMTMGFKP+V
Subjt:  ---DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV

A0A5A7T3Z1 Putative Mediator of RNA polymerase II transcription subunit 268.9e-3750.79Show/hide
Query:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----
        TK+ LLFL LVLF +  LLC  A+S S N +LF   RRILES                      K   AP QSSKNQT          NKT+L K     
Subjt:  TKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES----------------------KSTNAPKQSSKNQT----------NKTILSK-----

Query:  ------------KKLNS------TSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWI-
                    KKLNS      TSKS NSTK TS+SAKK SD LK++ PKNKT TPN S         K NK QK+EKK ++EKPKK         W+ 
Subjt:  ------------KKLNS------TSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPS---------KPNKPQKTEKKQSQEKPKKL-------DWI-

Query:  ---DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV
           D D +SEFRDLPTKFQKT+IPDLA ISTTSKAYI KANKQMTMGFKP+V
Subjt:  ---DGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVV

A0A6J1HH31 uncharacterized protein LOC1114634175.4e-3452.38Show/hide
Query:  PTKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES-KSTNAPK-----------QSSKNQT----------NKTILSK--------------
        PTK+F+LFL L+LF A SLLC  A+S S N +L    RRILES +    PK           +S KNQT          NKTI+ K              
Subjt:  PTKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES-KSTNAPK-----------QSSKNQT----------NKTILSK--------------

Query:  ----KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNP----SKPNKPQKTEKKQSQEKPKKL-----DWID----GDFISEFRDLPTKFQKT
            KKLNSTSKS NSTK TS  AKK SD LKL+ PKNKT T        KPNK QK + KQSQEKPKK      +WID     DF+S+FRDLP K  K 
Subjt:  ----KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNP----SKPNKPQKTEKKQSQEKPKKL-----DWID----GDFISEFRDLPTKFQKT

Query:  IIPDLATISTTSKAYIKKANKQMTMGFKPVV
        +IPDLA IST+SKAYI KANKQMTMGFKP+V
Subjt:  IIPDLATISTTSKAYIKKANKQMTMGFKPVV

A0A6J1KQI3 uncharacterized protein LOC1114967321.6e-3351.95Show/hide
Query:  PTKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES-KSTNAPK-----------QSSKNQT----------NKTILSK--------------
        PTK+FLLFL L+LF A SLLC  A+S S N +L    RRILES +    PK           +S KNQT          NKTI+ K              
Subjt:  PTKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILES-KSTNAPK-----------QSSKNQT----------NKTILSK--------------

Query:  ----KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNP----SKPNKPQKTEKKQSQEKPKKL-----DWID----GDFISEFRDLPTKFQKT
             KLNSTSKS NSTK TS SAKK SD LKL+ PKNKT T        KPNK QK + KQS+EKPKK       WID     DF+S+F+DLP K  K 
Subjt:  ----KKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNP----SKPNKPQKTEKKQSQEKPKKL-----DWID----GDFISEFRDLPTKFQKT

Query:  IIPDLATISTTSKAYIKKANKQMTMGFKPVV
        +IPDLA IST+SKAYI KANKQMTMGFKP+V
Subjt:  IIPDLATISTTSKAYIKKANKQMTMGFKPVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G39840.1 unknown protein1.0e-1649.32Show/hide
Query:  SKSTNAPKQSSKNQTNKTILSKKKLNSTSKSPNSTKPTSVSA---KKPSDPLKLT--PPKNKTKTPNPSKPNKPQK---TEKKQSQEKPKKLDWIDG---
        S   N+ K SS   T KT    KKLNS +KS NST     SA   K  S   K T  PP +K  +P   K ++P     T+ KQS EK  K  W+D    
Subjt:  SKSTNAPKQSSKNQTNKTILSKKKLNSTSKSPNSTKPTSVSA---KKPSDPLKLT--PPKNKTKTPNPSKPNKPQK---TEKKQSQEKPKKLDWIDG---

Query:  -DFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKP
         DF+SEFRDLPT+FQ+++IPDL  ISTTSK YI KANKQ+T  FKP
Subjt:  -DFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACACCCACAAAGCTATTTCTACTCTTTCTTGCTTTGGTTCTTTTCACTGCACCTTCTCTGTTATGTGCGAACGCCCAATCCCCATCTCCAAATGCAGATTTGTT
TCCAATTGCAAGAAGAATTTTGGAGTCAAAATCCACCAATGCCCCCAAGCAATCCTCAAAAAACCAAACCAACAAGACCATACTTTCAAAAAAAAAGCTCAATTCCACAT
CCAAATCCCCCAATTCTACAAAACCCACTTCAGTTTCCGCCAAGAAACCCTCAGATCCACTCAAATTGACCCCACCCAAGAACAAAACCAAAACCCCCAACCCCTCAAAA
CCAAACAAACCCCAGAAAACAGAGAAGAAACAGAGTCAAGAAAAGCCCAAGAAACTCGACTGGATCGACGGGGATTTCATTTCGGAATTCAGAGATCTACCCACGAAATT
TCAAAAAACCATAATCCCAGATTTGGCAACAATCTCCACAACATCAAAAGCCTACATCAAAAAAGCCAACAAACAAATGACAATGGGATTCAAACCCGTCGTGGTTTTTC
TATTCTGCTTCCGAGTCCACGTACGTTTGGTTGCAGGTGATGCAGACCCTTGGTTACATTTTGTACCTGGTTGTTTTGGTCATGTATTTGGTGCTTGTGTTCTCTACGGA
TTGTGGGCTGGGCTCGAGGGTTTTGGCCCTGGCCCAGATGTTTGTCGGGTATGCGGTCGGGATGGTTCTGCATCGGCCGCCGAGGACGAACTGGAAGATTCATGGGATTT
ACGCCACGTGTTTTGTGGTGATTTGTGCCATGGGTGGGGCCGTGAGGAGGAAGAAGGCTTACGTGGAAGAAGATGGAGGAGAGGGAAAGAAAAGTTGAGTTTTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTACACCCACAAAGCTATTTCTACTCTTTCTTGCTTTGGTTCTTTTCACTGCACCTTCTCTGTTATGTGCGAACGCCCAATCCCCATCTCCAAATGCAGATTTGTT
TCCAATTGCAAGAAGAATTTTGGAGTCAAAATCCACCAATGCCCCCAAGCAATCCTCAAAAAACCAAACCAACAAGACCATACTTTCAAAAAAAAAGCTCAATTCCACAT
CCAAATCCCCCAATTCTACAAAACCCACTTCAGTTTCCGCCAAGAAACCCTCAGATCCACTCAAATTGACCCCACCCAAGAACAAAACCAAAACCCCCAACCCCTCAAAA
CCAAACAAACCCCAGAAAACAGAGAAGAAACAGAGTCAAGAAAAGCCCAAGAAACTCGACTGGATCGACGGGGATTTCATTTCGGAATTCAGAGATCTACCCACGAAATT
TCAAAAAACCATAATCCCAGATTTGGCAACAATCTCCACAACATCAAAAGCCTACATCAAAAAAGCCAACAAACAAATGACAATGGGATTCAAACCCGTCGTGGTTTTTC
TATTCTGCTTCCGAGTCCACGTACGTTTGGTTGCAGGTGATGCAGACCCTTGGTTACATTTTGTACCTGGTTGTTTTGGTCATGTATTTGGTGCTTGTGTTCTCTACGGA
TTGTGGGCTGGGCTCGAGGGTTTTGGCCCTGGCCCAGATGTTTGTCGGGTATGCGGTCGGGATGGTTCTGCATCGGCCGCCGAGGACGAACTGGAAGATTCATGGGATTT
ACGCCACGTGTTTTGTGGTGATTTGTGCCATGGGTGGGGCCGTGAGGAGGAAGAAGGCTTACGTGGAAGAAGATGGAGGAGAGGGAAAGAAAAGTTGAGTTTTTGTTGA
Protein sequenceShow/hide protein sequence
MSTPTKLFLLFLALVLFTAPSLLCANAQSPSPNADLFPIARRILESKSTNAPKQSSKNQTNKTILSKKKLNSTSKSPNSTKPTSVSAKKPSDPLKLTPPKNKTKTPNPSK
PNKPQKTEKKQSQEKPKKLDWIDGDFISEFRDLPTKFQKTIIPDLATISTTSKAYIKKANKQMTMGFKPVVVFLFCFRVHVRLVAGDADPWLHFVPGCFGHVFGACVLYG
LWAGLEGFGPGPDVCRVCGRDGSASAAEDELEDSWDLRHVFCGDLCHGWGREEEEGLRGRRWRRGKEKLSFC