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Sed0008287 (gene) of Chayote v1 genome

Gene IDSed0008287
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG11:20891813..20892605
RNA-Seq ExpressionSed0008287
SyntenySed0008287
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A2N9IXX1 Reverse transcriptase domain-containing protein7.3e-0550.88Show/hide
Query:  AICIGSVIGVVEEVDCDEEE-NTGVVMRIRIRINIGNPLSRGKLATSSSGKEVWCPF
        A  +G  +GVVE+V  DEEE      MRIR++I+I  PL RG+ AT + GKE+W PF
Subjt:  AICIGSVIGVVEEVDCDEEE-NTGVVMRIRIRINIGNPLSRGKLATSSSGKEVWCPF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATTTGTATTGGTTCAGTTATTGGGGTGGTAGAGGAGGTAGATTGTGATGAGGAGGAGAATACTGGGGTTGTGATGCGAATTCGCATTCGAATCAACATTGGCAA
TCCGCTTTCAAGAGGGAAGTTGGCGACTTCCAGTAGTGGGAAGGAGGTTTGGTGCCCTTTTATCGCCGGCCTTCTTACCCTCATGCGGGCTACATTCACGAAAACTAACA
CTCCTTTTAGGGTGAAGGATCTAGAGGATCGACTTCCACATTCTTTTGATCGTTCCTCTAATCGCAGTGAGCGTGGTGATGGTAGTTTCTGGCAGAGGGAAGGTGGCCAT
CGTAGAAGTGATTTTGGGCATTGGAGGAGGTCGTTGGCTGAGAATGGTGTTTCTCAGTTGAGAGAAAGAACTTCAACTAGTCCTTTGGTTCCAGCTACTTCTGTTGGTAA
GGTGGAGGGTGCCCAGTTTGAAGGTCTCAAATCAAGCATTGTGGAGAATTTGAGTGCTTGTACTCCAGTTAATCAAACCATTATTCTTAATGATGAAATTTCTTTGAAGC
TGAATAAGGAGTTGGCGGGTGATATATCTGTATCCAAGGGTGTTAAGGCTAAGAGTGGATGTGGAAAAAATTTGATTTCCTTTGAGAAGCAGGTGGGCAAGTCTTTAGGC
AGTCAAAGTGTTCTACTGGTTGCTACTTCAAATGGCTCTATTTTTTCAGTGGTCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAATTTGTATTGGTTCAGTTATTGGGGTGGTAGAGGAGGTAGATTGTGATGAGGAGGAGAATACTGGGGTTGTGATGCGAATTCGCATTCGAATCAACATTGGCAA
TCCGCTTTCAAGAGGGAAGTTGGCGACTTCCAGTAGTGGGAAGGAGGTTTGGTGCCCTTTTATCGCCGGCCTTCTTACCCTCATGCGGGCTACATTCACGAAAACTAACA
CTCCTTTTAGGGTGAAGGATCTAGAGGATCGACTTCCACATTCTTTTGATCGTTCCTCTAATCGCAGTGAGCGTGGTGATGGTAGTTTCTGGCAGAGGGAAGGTGGCCAT
CGTAGAAGTGATTTTGGGCATTGGAGGAGGTCGTTGGCTGAGAATGGTGTTTCTCAGTTGAGAGAAAGAACTTCAACTAGTCCTTTGGTTCCAGCTACTTCTGTTGGTAA
GGTGGAGGGTGCCCAGTTTGAAGGTCTCAAATCAAGCATTGTGGAGAATTTGAGTGCTTGTACTCCAGTTAATCAAACCATTATTCTTAATGATGAAATTTCTTTGAAGC
TGAATAAGGAGTTGGCGGGTGATATATCTGTATCCAAGGGTGTTAAGGCTAAGAGTGGATGTGGAAAAAATTTGATTTCCTTTGAGAAGCAGGTGGGCAAGTCTTTAGGC
AGTCAAAGTGTTCTACTGGTTGCTACTTCAAATGGCTCTATTTTTTCAGTGGTCAATTGA
Protein sequenceShow/hide protein sequence
MAICIGSVIGVVEEVDCDEEENTGVVMRIRIRINIGNPLSRGKLATSSSGKEVWCPFIAGLLTLMRATFTKTNTPFRVKDLEDRLPHSFDRSSNRSERGDGSFWQREGGH
RRSDFGHWRRSLAENGVSQLRERTSTSPLVPATSVGKVEGAQFEGLKSSIVENLSACTPVNQTIILNDEISLKLNKELAGDISVSKGVKAKSGCGKNLISFEKQVGKSLG
SQSVLLVATSNGSIFSVVN