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Sed0008319 (gene) of Chayote v1 genome

Gene IDSed0008319
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG04:47348796..47349041
RNA-Seq ExpressionSed0008319
SyntenySed0008319
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]8.7e-2983.33Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGN
        MASMSSHGS +WT KQNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVEDVKFIESGQVP+PYRT+G+
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGN

KAE8645641.1 hypothetical protein Csa_020418 [Cucumis sativus]5.6e-2883.12Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG
        MASMSSHGS +WT  QNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVEDVKFIESGQVP+PYRT+G
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG

XP_004151125.2 protein RADIALIS-like 1 [Cucumis sativus]5.6e-2883.12Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG
        MASMSSHGS +WT  QNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVEDVKFIESGQVP+PYRT+G
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG

XP_008447024.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]8.7e-2983.33Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGN
        MASMSSHGS +WT KQNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVEDVKFIESGQVP+PYRT+G+
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGN

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]6.7e-2985.71Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG
        MASMSSHGSS+WT KQNKAFE ALAVYDQD+P RW+NVAKAVG KT EEVKRHYELLVEDVKFIESGQV +PYRT+G
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG

TrEMBL top hitse value%identityAlignment
A0A0A0K348 SANT domain-containing protein2.7e-2883.12Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG
        MASMSSHGS +WT  QNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVEDVKFIESGQVP+PYRT+G
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG

A0A1S3BFW6 protein RADIALIS-like 14.2e-2983.33Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGN
        MASMSSHGS +WT KQNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVEDVKFIESGQVP+PYRT+G+
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGN

A0A5A7SYK4 Protein RADIALIS-like 14.2e-2983.33Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGN
        MASMSSHGS +WT KQNKAFE ALAVYDQD+P+RW+NVAKAVG KT EEVKRHY LLVEDVKFIESGQVP+PYRT+G+
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGN

A0A6J1C385 protein RADIALIS-like 13.2e-2985.71Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG
        MASMSSHGSS+WT KQNKAFE ALAVYDQD+P RW+NVAKAVG KT EEVKRHYELLVEDVKFIESGQV +PYRT+G
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG

A0A6J1F548 protein RADIALIS-like 11.4e-2780.52Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG
        MASMSSHGS+SWT KQNKAFE ALA YD+D+P+RW+NVA+AVG KT EEVKRHY+LLVEDVKFIESG+VPYPYR +G
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTG

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.6e-2572.73Show/hide
Query:  ASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTTG
        +SMSS  S SWT KQNKAFE ALA YDQD+PNRW NVAK VG KT EEVKRHYELLV+D+  IE+G VP+P YRT+G
Subjt:  ASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTTG

Q58FS3 Transcription factor RADIALIS3.3e-2365.43Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTTGNIM
        MAS    G   W+ K+NKAFE ALAVYD+D+P+RW NVA+AV  +TPEEVK+HYE+LVED+K+IESG+VP+P YRTTG  M
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTTGNIM

Q6NNN0 Protein RADIALIS-like 38.2e-2264.56Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTTGN
        MAS S   S+SWT K+NK FE ALA YDQD+P+RW NVA+AVG K+ EEV+RHYELL+ DV  IESG+ P+P YR+ GN
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTTGN

Q8GW75 Protein RADIALIS-like 51.2e-2067.11Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRT
        MAS S   SSSWT KQNK FE ALAVYD+D+P+RW NVAKAVG K+ EEVKRHY++LVED+  IE   VP P Y+T
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRT

Q9SIJ5 Protein RADIALIS-like 23.9e-2472Show/hide
Query:  SMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTT
        SMSS+GS SWT KQNKAFE ALAVYDQD+P+RW NVA+AVG KTPEE KR Y+LLV D++ IE+G VP+P Y+TT
Subjt:  SMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTT

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 58.4e-2267.11Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRT
        MAS S   SSSWT KQNK FE ALAVYD+D+P+RW NVAKAVG K+ EEVKRHY++LVED+  IE   VP P Y+T
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRT

AT1G75250.1 RAD-like 61.6e-2065.79Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRT
        MAS S    S WT  QNK FE ALAVYD+D+P+RW NVAKAVG KT EEVKRHY++LVED+  IE+G+VP P Y+T
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRT

AT1G75250.2 RAD-like 61.6e-2065.79Show/hide
Query:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRT
        MAS S    S WT  QNK FE ALAVYD+D+P+RW NVAKAVG KT EEVKRHY++LVED+  IE+G+VP P Y+T
Subjt:  MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRT

AT2G21650.1 Homeodomain-like superfamily protein2.8e-2572Show/hide
Query:  SMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTT
        SMSS+GS SWT KQNKAFE ALAVYDQD+P+RW NVA+AVG KTPEE KR Y+LLV D++ IE+G VP+P Y+TT
Subjt:  SMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTT

AT4G39250.1 RAD-like 12.5e-2672.73Show/hide
Query:  ASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTTG
        +SMSS  S SWT KQNKAFE ALA YDQD+PNRW NVAK VG KT EEVKRHYELLV+D+  IE+G VP+P YRT+G
Subjt:  ASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYP-YRTTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTTCCCATGGTTCTAGCTCATGGACTCCAAAGCAAAACAAGGCCTTTGAGATGGCTTTGGCCGTTTATGACCAAGACTCCCCTAACCGATGGGTGAA
TGTTGCGAAAGCGGTTGGTGAAAAAACGCCTGAGGAAGTCAAAAGGCACTATGAGCTTCTTGTGGAAGATGTCAAGTTTATCGAGTCTGGTCAAGTTCCCTACCCATATC
GTACTACAGGTAATATAATGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAATGTCTTCCCATGGTTCTAGCTCATGGACTCCAAAGCAAAACAAGGCCTTTGAGATGGCTTTGGCCGTTTATGACCAAGACTCCCCTAACCGATGGGTGAA
TGTTGCGAAAGCGGTTGGTGAAAAAACGCCTGAGGAAGTCAAAAGGCACTATGAGCTTCTTGTGGAAGATGTCAAGTTTATCGAGTCTGGTCAAGTTCCCTACCCATATC
GTACTACAGGTAATATAATGGCATGA
Protein sequenceShow/hide protein sequence
MASMSSHGSSSWTPKQNKAFEMALAVYDQDSPNRWVNVAKAVGEKTPEEVKRHYELLVEDVKFIESGQVPYPYRTTGNIMA