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Sed0008393 (gene) of Chayote v1 genome

Gene IDSed0008393
OrganismSechium edule (Chayote v1)
DescriptionRAB6-interacting golgin
Genome locationLG03:12782121..12786017
RNA-Seq ExpressionSed0008393
SyntenySed0008393
Gene Ontology termsGO:0005794 - Golgi apparatus (cellular component)
InterPro domainsIPR007033 - RAB6-interacting golgin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004139478.1 uncharacterized protein LOC101203874 [Cucumis sativus]8.9e-5988.59Show/hide
Query:  SSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKE
        ++G+IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAEEATKRLAEIREELE M DPMRKEVSFIRKKIDLVNKELKPLG  CQKKE
Subjt:  SSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKE

Query:  REYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDIL
        REYKEVL+LFNEKN EKSQL++KLMELV ESEKLRMKKLEELSKNIDIL
Subjt:  REYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDIL

XP_008461743.1 PREDICTED: probable DNA double-strand break repair Rad50 ATPase [Cucumis melo]1.5e-5884.91Show/hide
Query:  KSSGM--------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKP
        K+SGM        IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAEEATKRLAEIREELE M DPMRKEVSFIRKKIDLVNKELKP
Subjt:  KSSGM--------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKP

Query:  LGFACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH
        LG  CQKKEREYKEVL+LFNEKN EKSQL++KLMELV ESEKLRM+KLEELSKNIDILH
Subjt:  LGFACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

XP_022142637.1 uncharacterized protein LOC111012700 [Momordica charantia]1.8e-5987.26Show/hide
Query:  KSSGM------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLG
        ++SGM      IGSP +EDQ+EELSRSA A+FRAKEEEIERKK EMR+KVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLG
Subjt:  KSSGM------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLG

Query:  FACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH
          CQKKEREYKEVLELFNEKN EKSQL+AKLMELV ESEKLRMKKLEELSKNIDILH
Subjt:  FACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

XP_022930056.1 uncharacterized protein LOC111436527 [Cucurbita moschata]3.4e-5891.78Show/hide
Query:  IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYK
        IGSPAREDQEEELSRSALA+FRAKEEEIERKK EMREKVE RLGRAEEATKRLAEIREELE M DPMRKEVS IRKKIDLVNKELKPLG  CQKKEREYK
Subjt:  IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYK

Query:  EVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH
        EVLEL NEKN EKSQLIAKLMELV ESEKLRMKKLEELS NIDILH
Subjt:  EVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

XP_038893849.1 uncharacterized protein LOC120082661 [Benincasa hispida]1.1e-5991.78Show/hide
Query:  IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYK
        IGSP +EDQEEE+SRSALAVFRAKEEEIERKK EMREKVEARLGRAEEATKRLAEIREELE M DPMRKEVSFIRKKIDLVNKELKPLG  CQKKEREYK
Subjt:  IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYK

Query:  EVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH
        EVL+LFNEKN EKSQL+AKLMELV ESEKLRMKKLEELSKNIDILH
Subjt:  EVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

TrEMBL top hitse value%identityAlignment
A0A0A0LY59 RAB6-interacting golgin4.3e-5988.59Show/hide
Query:  SSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKE
        ++G+IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAEEATKRLAEIREELE M DPMRKEVSFIRKKIDLVNKELKPLG  CQKKE
Subjt:  SSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKE

Query:  REYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDIL
        REYKEVL+LFNEKN EKSQL++KLMELV ESEKLRMKKLEELSKNIDIL
Subjt:  REYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDIL

A0A1S3CFV6 RAB6-interacting golgin7.4e-5984.91Show/hide
Query:  KSSGM--------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKP
        K+SGM        IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAEEATKRLAEIREELE M DPMRKEVSFIRKKIDLVNKELKP
Subjt:  KSSGM--------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKP

Query:  LGFACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH
        LG  CQKKEREYKEVL+LFNEKN EKSQL++KLMELV ESEKLRM+KLEELSKNIDILH
Subjt:  LGFACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

A0A5D3CH78 RAB6-interacting golgin7.4e-5984.91Show/hide
Query:  KSSGM--------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKP
        K+SGM        IGSP +EDQEEE+SRSALA+FRAKEEEIERKK EMREKVEARLGRAEEATKRLAEIREELE M DPMRKEVSFIRKKIDLVNKELKP
Subjt:  KSSGM--------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKP

Query:  LGFACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH
        LG  CQKKEREYKEVL+LFNEKN EKSQL++KLMELV ESEKLRM+KLEELSKNIDILH
Subjt:  LGFACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

A0A6J1CNF1 RAB6-interacting golgin8.7e-6087.26Show/hide
Query:  KSSGM------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLG
        ++SGM      IGSP +EDQ+EELSRSA A+FRAKEEEIERKK EMR+KVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLG
Subjt:  KSSGM------IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLG

Query:  FACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH
          CQKKEREYKEVLELFNEKN EKSQL+AKLMELV ESEKLRMKKLEELSKNIDILH
Subjt:  FACQKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

A0A6J1EPU7 RAB6-interacting golgin1.6e-5891.78Show/hide
Query:  IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYK
        IGSPAREDQEEELSRSALA+FRAKEEEIERKK EMREKVE RLGRAEEATKRLAEIREELE M DPMRKEVS IRKKIDLVNKELKPLG  CQKKEREYK
Subjt:  IGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYK

Query:  EVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH
        EVLEL NEKN EKSQLIAKLMELV ESEKLRMKKLEELS NIDILH
Subjt:  EVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27740.1 Family of unknown function (DUF662)1.6e-4565.79Show/hide
Query:  KSSG---MIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFAC
        KSSG   M GSP  +++EEELS+SA A+F+AKE+EIER+K E++++V+ +LG AEEAT+RLAEIREELEA+ DPMRKE+S IRK++D +N+ELKPLG +C
Subjt:  KSSG---MIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFAC

Query:  QKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDI
        Q+KERE+KE LE +NEKN EK+  ++KL+ELV ESEKLRM KLEELSK+I+I
Subjt:  QKKEREYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDI

AT2G36410.2 Family of unknown function (DUF662)5.1e-4471.85Show/hide
Query:  QEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNE
        ++EE++RSAL+ FRAKE+EIE+++ E+RE+++A+LGR E+ TKRL+ IREELE+MADPMRKEVS +RKKID VNKELKPLG   QKKEREYKE L+ FNE
Subjt:  QEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNE

Query:  KNNEKSQLIAKLMELVKESEKLRMKKLEELSKNID
        KN EK QLI KLMELV ESEKLRM KLEELSK+I+
Subjt:  KNNEKSQLIAKLMELVKESEKLRMKKLEELSKNID

AT3G09980.1 Family of unknown function (DUF662)9.9e-4871.33Show/hide
Query:  SSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKE
        S  M  S     ++EE+SR+AL+ FRAKEEEIE+KK E+RE+V+A+LGR EE TKRLA IREELE +ADPMRKEV+ +RKKID VNKELKPLG   QKKE
Subjt:  SSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKE

Query:  REYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH
        REYKE LE FNEKN EK QLI +LMELV ESEK+RMKKLEELSKNID +H
Subjt:  REYKEVLELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH

AT3G52920.1 Family of unknown function (DUF662)2.5e-4371.01Show/hide
Query:  QEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNE
        ++EE++RSAL+ FRAKE+EIE++K E+RE+V+A+LGR EE T+RLA IREELE MADPMRKEV+++RKKID VNKELKPLG   QKKEREYKE L+ FNE
Subjt:  QEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNE

Query:  KNNEKSQLIAKLME---LVKESEKLRMKKLEELSKNID
        KN EK QLI KLME   LV ESEKLR+KKL+ELS++ID
Subjt:  KNNEKSQLIAKLME---LVKESEKLRMKKLEELSKNID

AT3G52920.2 Family of unknown function (DUF662)6.0e-4572.59Show/hide
Query:  QEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNE
        ++EE++RSAL+ FRAKE+EIE++K E+RE+V+A+LGR EE T+RLA IREELE MADPMRKEV+++RKKID VNKELKPLG   QKKEREYKE L+ FNE
Subjt:  QEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVLELFNE

Query:  KNNEKSQLIAKLMELVKESEKLRMKKLEELSKNID
        KN EK QLI KLMELV ESEKLR+KKL+ELS++ID
Subjt:  KNNEKSQLIAKLMELVKESEKLRMKKLEELSKNID


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAAGAGCTCCGGCATGATTGGGAGTCCGGCGAGGGAAGATCAAGAGGAAGAGCTTTCGCGGTCGGCGCTGGCGGTGTTTCGCGCCAAGGAAGAGGAGATCGAGAG
GAAGAAGACGGAGATGAGGGAAAAAGTGGAGGCTCGCCTTGGCCGCGCAGAAGAAGCCACCAAGCGATTGGCGGAGATTCGAGAAGAGCTTGAAGCAATGGCGGATCCGA
TGAGGAAGGAGGTTTCGTTCATACGGAAGAAGATTGATTTGGTCAATAAAGAATTGAAGCCTTTGGGATTTGCCTGTCAAAAGAAGGAGAGAGAATACAAAGAAGTGTTG
GAGTTATTTAATGAAAAGAACAACGAGAAGTCTCAATTGATAGCCAAGCTAATGGAGTTGGTGAAAGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTGAGCAA
GAACATTGACATTCTTCATTAA
mRNA sequenceShow/hide mRNA sequence
CTCATTTTTACTTTTAAAAACGACTCTCATTTCTAACGATTCATTTTTAATCATTCATTTATAACTACTCAATCATTTCTAACCACCCATTTTTAATCATTCCTTTCAAA
TCCATCAAAATAATTCATTTTTAACCACTCATTTTTAATCATTTTTTAACTACTAAAAATAACTACTCATTTTAAATCTACATCCAAATAAAATTTTGACTCTAACACCT
CTACATAAAAACTTCATCCAAACGAGTTTTTGGCTACAACTTTTAATTTTTAACTAGTCAACATAACTCCTCAATATAACTCGTTAACCGAAATCCTATCTAAATATGTC
AAACAAACAGCCACTCAGGGTTACATAAGCCAAGCACGAAGGAATAGAGACACGAAAAGTGTCTAACCACAGGACCAATCTAGGATGGTTGATTTCATATTCAGTATAGA
TAACACGACCTTAGTGTCCACTCCAACACAAAACTTGCAGTCGAAGCAGCTCCCACATTTCAATTCCTAGGAAACCCCCAAAAGTCATGGACACATCTTTGACCCAAAGC
AAAAGTAAACTCTCCATCACAATTAGGTAACACACAACTTTATGGCTGTATTCAAATAACAGGACAACAAAAACAATCCGCAAACAAAAGAATCAAATTGTAATGAATTA
GGCGTTTGAGTAAAGATAAGTGCATATTTGGATCCAAAAACGGACAACAGAGACAGGAAGCAAGCAAGCAGATTACACAAATTAGGTCAGTTTCAAAGAGATAGCGAAAT
GTGAATTAAGAAGCTAAAAACGCAAAATCGAGAAGTCACATACCATTTAAAGCCCAGCCCAGGCGAGTGAGCCGAAAGAGAATCGTCATCATCATCATCAATTGGCAGCA
GGGCCATGGCGAAGAGCTCCGGCATGATTGGGAGTCCGGCGAGGGAAGATCAAGAGGAAGAGCTTTCGCGGTCGGCGCTGGCGGTGTTTCGCGCCAAGGAAGAGGAGATC
GAGAGGAAGAAGACGGAGATGAGGGAAAAAGTGGAGGCTCGCCTTGGCCGCGCAGAAGAAGCCACCAAGCGATTGGCGGAGATTCGAGAAGAGCTTGAAGCAATGGCGGA
TCCGATGAGGAAGGAGGTTTCGTTCATACGGAAGAAGATTGATTTGGTCAATAAAGAATTGAAGCCTTTGGGATTTGCCTGTCAAAAGAAGGAGAGAGAATACAAAGAAG
TGTTGGAGTTATTTAATGAAAAGAACAACGAGAAGTCTCAATTGATAGCCAAGCTAATGGAGTTGGTGAAAGAGAGCGAAAAATTGAGGATGAAGAAGCTGGAAGAGCTG
AGCAAGAACATTGACATTCTTCATTAACAAATATGTGTGTTCTTCTAACTCAAAATAACCCCCCCTTTTTTTTTCTCCTTCTCAATATTATCTATTTTTTTTCTTCTGAA
GATTTCTATGAAAAATATGGAGAGAAGAGAGAGAAAATAAATTTAACTTTGTGGAGTGGATGACTTTTGCTTGTATTAATAAATTCTTAAACTACTACCAAGTATTGATT
CAGTGTTTGGAGTATGATTTTCTCATTTCATGCCTGTAATTTTCATTTCTTTTTACCCAACCATTTTTTAGAAATAATTTTGAGTGGGA
Protein sequenceShow/hide protein sequence
MAKSSGMIGSPAREDQEEELSRSALAVFRAKEEEIERKKTEMREKVEARLGRAEEATKRLAEIREELEAMADPMRKEVSFIRKKIDLVNKELKPLGFACQKKEREYKEVL
ELFNEKNNEKSQLIAKLMELVKESEKLRMKKLEELSKNIDILH