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Sed0008411 (gene) of Chayote v1 genome

Gene IDSed0008411
OrganismSechium edule (Chayote v1)
DescriptionUbiquitin-like protein ATG12
Genome locationLG06:46158594..46164875
RNA-Seq ExpressionSed0008411
SyntenySed0008411
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0000422 - autophagy of mitochondrion (biological process)
GO:0006501 - C-terminal protein lipidation (biological process)
GO:0044804 - autophagy of nucleus (biological process)
GO:0034045 - phagophore assembly site membrane (cellular component)
GO:0034274 - Atg12-Atg5-Atg16 complex (cellular component)
InterPro domainsIPR007242 - Ubiquitin-like protein Atg12
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151012.1 ubiquitin-like protein ATG12 [Cucumis sativus]1.6e-4294.74Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESSSSARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_008464001.1 PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]3.6e-4293.68Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESS+SARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022153405.1 ubiquitin-like protein ATG12 [Momordica charantia]3.4e-4091.58Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSSS RKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022955552.1 ubiquitin-like protein ATG12 [Cucurbita moschata]1.2e-4091.58Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSSSA+KVV+LLR+ GDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_038878493.1 ubiquitin-like protein ATG12 [Benincasa hispida]5.6e-4395.79Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MASTESSSSARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

TrEMBL top hitse value%identityAlignment
A0A0A0LIA6 Ubiquitin-like protein ATG127.9e-4394.74Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESSSSARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A1S3CKI1 Ubiquitin-like protein ATG121.8e-4293.68Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STESS+SARKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1DGR5 Ubiquitin-like protein ATG121.6e-4091.58Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSSS RKVV+LLRATGDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1GTZ1 Ubiquitin-like protein ATG125.6e-4191.58Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESSSSA+KVV+LLR+ GDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1J054 Ubiquitin-like protein ATG122.8e-4089.47Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS ESS+S++KVV+LLR+ GDAPILKQ KFKM GTDKFIKVIDYIRRSIQR+TLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

SwissProt top hitse value%identityAlignment
A2YAG8 Ubiquitin-like protein ATG129.6e-3064.04Show/hide
Query:  SSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        ++  +KVV+  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I ++T+F++VNSAFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  SSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q1SF86 Ubiquitin-like protein ATG129.6e-3877.89Show/hide
Query:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MA+ ES +S RKVV+ LRATGDAPILKQ+KFK++GTDKF KVID++RR + RE+LFV+VNSAFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q69NP0 Ubiquitin-like protein ATG129.6e-3064.04Show/hide
Query:  SSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        ++  +KVV+  R+TG+AP LKQ+KFK+ G +KF+K+ID++RR I ++T+F++VNSAFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  SSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q8S924 Ubiquitin-like protein ATG12A7.6e-3575.79Show/hide
Query:  STESS--SSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TESS  SS RKVV+ LRATG APILKQ+KFK+ GTDKF KVID++RR +  ++LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESS--SSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q9LVK3 Ubiquitin-like protein ATG12B2.2e-3472.04Show/hide
Query:  STESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TES +S +K+V+ LRATG APILKQ+KFK+SG+DKF  VID++RR +  ++LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Arabidopsis top hitse value%identityAlignment
AT1G54210.1 Ubiquitin-like superfamily protein5.4e-3675.79Show/hide
Query:  STESS--SSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TESS  SS RKVV+ LRATG APILKQ+KFK+ GTDKF KVID++RR +  ++LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESS--SSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT1G54210.2 Ubiquitin-like superfamily protein5.1e-1044.21Show/hide
Query:  STESS--SSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TESS  SS RKVV+ LRATG APILKQ+KFK                                            NFG DGKLVVNYACSMAWG
Subjt:  STESS--SSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT3G13970.1 Ubiquitin-like superfamily protein1.6e-3572.04Show/hide
Query:  STESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TES +S +K+V+ LRATG APILKQ+KFK+SG+DKF  VID++RR +  ++LFV+VNSAFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAACGGAGTCGTCTAGTTCTGCACGAAAAGTGGTTATTCTGCTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAGCCAAATTCAAGATGTCTGGAACTGA
CAAATTTATTAAAGTTATTGATTACATACGCCGGTCAATTCAACGAGAAACCTTGTTTGTCTTTGTCAATAGTGCATTCTCGCCAGGTCCAGATGAGACAGTTATTGATC
TATACAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAACGGAGTCGTCTAGTTCTGCACGAAAAGTGGTTATTCTGCTGAGAGCTACTGGGGATGCTCCCATTCTCAAACAAGCCAAATTCAAGATGTCTGGAACTGA
CAAATTTATTAAAGTTATTGATTACATACGCCGGTCAATTCAACGAGAAACCTTGTTTGTCTTTGTCAATAGTGCATTCTCGCCAGGTCCAGATGAGACAGTTATTGATC
TATACAATAACTTTGGAATTGATGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA
Protein sequenceShow/hide protein sequence
MASTESSSSARKVVILLRATGDAPILKQAKFKMSGTDKFIKVIDYIRRSIQRETLFVFVNSAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG