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Sed0008416 (gene) of Chayote v1 genome

Gene IDSed0008416
OrganismSechium edule (Chayote v1)
DescriptionDBD_Tnp_Mut domain-containing protein
Genome locationLG02:32982650..32985139
RNA-Seq ExpressionSed0008416
SyntenySed0008416
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031318.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]4.5e-1337.74Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD
        M K+PIVVFH GQW+   SY  YK +GVLVDE+MSFE F+                                 +I EDKDV  FL+LVK   TRHPLV  
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD

Query:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        A     D  LE +S   S + N   L+ SS++DD+      F ++ DI +   S   +L
Subjt:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL

KAA0059897.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]4.5e-1337.74Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD
        M K+PIVVFH GQW+   SY  YK +GVLVDE+MSFE F+                                 +I EDKDV  FL+LVK   TRHPLV  
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD

Query:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        A     D  LE +S   S + N   L+ SS++DD+      F ++ DI +   S   +L
Subjt:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL

TYJ98376.1 uncharacterized protein E5676_scaffold232G001130 [Cucumis melo var. makuwa]4.5e-1337.74Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD
        M K+PIVVFH GQW+   SY  YK +GVLVDE+MSFE F+                                 +I EDKDV  FL+LVK   TRHPLV  
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD

Query:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        A     D  LE +S   S + N   L+ SS++DD+      F ++ DI +   S   +L
Subjt:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL

TYK09469.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]4.5e-1337.74Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD
        M K+PIVVFH GQW+   SY  YK +GVLVDE+MSFE F+                                 +I EDKDV  FL+LVK   TRHPLV  
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD

Query:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        A     D  LE +S   S + N   L+ SS++DD+      F ++ DI +   S   +L
Subjt:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL

TYK14543.1 uncharacterized protein E5676_scaffold552G00250 [Cucumis melo var. makuwa]7.0e-1441.86Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFIPPFEILEDKDVDRFLTLVKNNGTRHPLVVDA------KDFYLEGTSSSVVSNSTLLVSSS
        M K+PIVVFH GQW+   SY  YK +GVLVDE+M F+        LEDKDV  FL+LVK   TRHPLV  A       D        S + N   L+ SS
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFIPPFEILEDKDVDRFLTLVKNNGTRHPLVVDA------KDFYLEGTSSSVVSNSTLLVSSS

Query:  TVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        ++DD+      F ++ DI +   S   +L
Subjt:  TVDDNDGDGVPFHVIKDIRLDYKSFLVNL

TrEMBL top hitse value%identityAlignment
A0A5A7T3G5 Protein FAR1-RELATED SEQUENCE 4-like2.2e-1337.74Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD
        M K+PIVVFH GQW+   SY  YK +GVLVDE+MSFE F+                                 +I EDKDV  FL+LVK   TRHPLV  
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD

Query:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        A     D  LE +S   S + N   L+ SS++DD+      F ++ DI +   S   +L
Subjt:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL

A0A5A7UZ18 Protein FAR1-RELATED SEQUENCE 4-like2.2e-1337.74Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD
        M K+PIVVFH GQW+   SY  YK +GVLVDE+MSFE F+                                 +I EDKDV  FL+LVK   TRHPLV  
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD

Query:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        A     D  LE +S   S + N   L+ SS++DD+      F ++ DI +   S   +L
Subjt:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL

A0A5D3C8T8 SWIM-type domain-containing protein2.2e-1337.74Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD
        M K+PIVVFH GQW+   SY  YK +GVLVDE+MSFE F+                                 +I EDKDV  FL+LVK   TRHPLV  
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD

Query:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        A     D  LE +S   S + N   L+ SS++DD+      F ++ DI +   S   +L
Subjt:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL

A0A5D3CRP1 SWIM-type domain-containing protein3.4e-1441.86Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFIPPFEILEDKDVDRFLTLVKNNGTRHPLVVDA------KDFYLEGTSSSVVSNSTLLVSSS
        M K+PIVVFH GQW+   SY  YK +GVLVDE+M F+        LEDKDV  FL+LVK   TRHPLV  A       D        S + N   L+ SS
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFIPPFEILEDKDVDRFLTLVKNNGTRHPLVVDA------KDFYLEGTSSSVVSNSTLLVSSS

Query:  TVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        ++DD+      F ++ DI +   S   +L
Subjt:  TVDDNDGDGVPFHVIKDIRLDYKSFLVNL

A0A5D3DAW8 Protein FAR1-RELATED SEQUENCE 4-like2.2e-1337.74Show/hide
Query:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD
        M K+PIVVFH GQW+   SY  YK +GVLVDE+MSFE F+                                 +I EDKDV  FL+LVK   TRHPLV  
Subjt:  MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFI------------------------------PPFEILEDKDVDRFLTLVKNNGTRHPLVVD

Query:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL
        A     D  LE +S   S + N   L+ SS++DD+      F ++ DI +   S   +L
Subjt:  A----KDFYLEGTS--SSVVSNSTLLVSSSTVDDNDGDGVPFHVIKDIRLDYKSFLVNL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAGATTCCTATTGTTGTCTTCCATGGTGGGCAATGGAATGCTAATGGTTCTTATGAGAAGTATAAGATTAGTGGAGTTTTGGTGGATGAACTAATGAGTTTTGA
AACTTTTATACCCCCTTTTGAAATTTTGGAAGATAAAGACGTGGACCGGTTCTTAACATTAGTTAAGAATAATGGTACAAGACATCCATTAGTGGTTGATGCTAAGGACT
TTTATTTAGAGGGGACATCTAGTAGTGTTGTTAGCAATTCAACTTTGTTGGTGTCTTCATCAACTGTAGATGATAACGATGGTGATGGTGTGCCTTTTCATGTCATTAAA
GATATTCGGTTGGATTACAAATCATTTTTGGTTAATTTGGATACTCGGTCATGTACATGCCGTGTTTGGGATCTTGATGAAATTCCATGCTCTCATGCGTTTGTCGCTAT
ATCGTGCACTAGATTTGAATCCTTATACTTTTGTGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAGATTCCTATTGTTGTCTTCCATGGTGGGCAATGGAATGCTAATGGTTCTTATGAGAAGTATAAGATTAGTGGAGTTTTGGTGGATGAACTAATGAGTTTTGA
AACTTTTATACCCCCTTTTGAAATTTTGGAAGATAAAGACGTGGACCGGTTCTTAACATTAGTTAAGAATAATGGTACAAGACATCCATTAGTGGTTGATGCTAAGGACT
TTTATTTAGAGGGGACATCTAGTAGTGTTGTTAGCAATTCAACTTTGTTGGTGTCTTCATCAACTGTAGATGATAACGATGGTGATGGTGTGCCTTTTCATGTCATTAAA
GATATTCGGTTGGATTACAAATCATTTTTGGTTAATTTGGATACTCGGTCATGTACATGCCGTGTTTGGGATCTTGATGAAATTCCATGCTCTCATGCGTTTGTCGCTAT
ATCGTGCACTAGATTTGAATCCTTATACTTTTGTGTCTAA
Protein sequenceShow/hide protein sequence
MDKIPIVVFHGGQWNANGSYEKYKISGVLVDELMSFETFIPPFEILEDKDVDRFLTLVKNNGTRHPLVVDAKDFYLEGTSSSVVSNSTLLVSSSTVDDNDGDGVPFHVIK
DIRLDYKSFLVNLDTRSCTCRVWDLDEIPCSHAFVAISCTRFESLYFCV