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Sed0008419 (gene) of Chayote v1 genome

Gene IDSed0008419
OrganismSechium edule (Chayote v1)
DescriptionBEST Arabidopsis thaliana protein match is: Galact s in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationLG10:710962..711219
RNA-Seq ExpressionSed0008419
SyntenySed0008419
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052524.1 hypothetical protein E6C27_scaffold120G001250 [Cucumis melo var. makuwa]5.4e-2176.25Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPAS-RRNQPSSTVPASTTDGANSRYLVKNINRSFS
        MANS IARFVTEVAPPQIISVMRRRTSKVLDTISEE+RECNKNEYPA+ +R+  SS+  AS   GANS Y V+NI+R FS
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPAS-RRNQPSSTVPASTTDGANSRYLVKNINRSFS
KAG6594447.1 hypothetical protein SDJN03_11000, partial [Cucurbita argyrosperma subsp. sororia]3.7e-2278.48Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSSTVPASTTDGANSRYLVKNINRSFS
        MANS IARFVTEVAPPQIISVMRRRTSKVLDTISEEER+C+K EYPAS  +   ST PA  T  ANSRY V+NINRSFS
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSSTVPASTTDGANSRYLVKNINRSFS
KAG7034740.1 hypothetical protein SDJN02_04470, partial [Cucurbita argyrosperma subsp. argyrosperma]2.8e-1780.6Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSSTVPASTTDGANS
        MANS IARFVTEVAPPQIISVMRRRTSKVLDTISEEER+ +KNEYPAS R+ PSST PA     ANS
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSSTVPASTTDGANS
KGN49420.1 hypothetical protein Csa_003492 [Cucumis sativus]2.0e-2076.25Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPAS-RRNQPSSTVPASTTDGANSRYLVKNINRSFS
        MANS IARFVTEVAPPQIISVMRRRTSKVLDTISEE+RECNKNEYPA+  R+  SST  AS    ANS Y V+NI+R FS
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPAS-RRNQPSSTVPASTTDGANSRYLVKNINRSFS
OIS96718.1 hypothetical protein A4A49_39256 [Nicotiana attenuata]5.9e-1253.66Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSST--VPASTTDGANSRYLVKNINRSFSI
        MAN+ IARFVTEVAPPQ ++VMR+R SK+LDTI EEERE   +E  + + + PSST    AS ++  NS+Y +K + RS S+
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSST--VPASTTDGANSRYLVKNINRSFSI
TrEMBL top hitse value%identityAlignment
A0A0A0KI68 Uncharacterized protein9.9e-2176.25Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPAS-RRNQPSSTVPASTTDGANSRYLVKNINRSFS
        MANS IARFVTEVAPPQIISVMRRRTSKVLDTISEE+RECNKNEYPA+  R+  SST  AS    ANS Y V+NI+R FS
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPAS-RRNQPSSTVPASTTDGANSRYLVKNINRSFS
A0A1J6IG54 Uncharacterized protein2.9e-1253.66Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSST--VPASTTDGANSRYLVKNINRSFSI
        MAN+ IARFVTEVAPPQ ++VMR+R SK+LDTI EEERE   +E  + + + PSST    AS ++  NS+Y +K + RS S+
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSST--VPASTTDGANSRYLVKNINRSFSI
A0A3Q7ITW2 Uncharacterized protein4.9e-1253.75Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSSTVPASTTDGANSRYLVKNINRSFSI
        MAN+ IARFVTEVAPPQ ++VMR R SK+LDTI+EEERE +K+E    +   PSS+  +S+++  NS+Y +K + RSF +
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSSTVPASTTDGANSRYLVKNINRSFSI
A0A5D3CN92 Uncharacterized protein2.6e-2176.25Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPAS-RRNQPSSTVPASTTDGANSRYLVKNINRSFS
        MANS IARFVTEVAPPQIISVMRRRTSKVLDTISEE+RECNKNEYPA+ +R+  SS+  AS   GANS Y V+NI+R FS
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPAS-RRNQPSSTVPASTTDGANSRYLVKNINRSFS
M1AJ74 Uncharacterized protein9.0e-1455Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSSTVPASTTDGANSRYLVKNINRSFSI
        MAN+ IARFVTEVAPPQ I+VMR R SK+LDTI+EEERE  K+E    + + PSS+  +S+++  NS+Y +K + RSF +
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSSTVPASTTDGANSRYLVKNINRSFSI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30260.1 BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT4G21060.1)2.0e-1044.32Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNE-YPASRRNQ--------------PSSTVPASTTDGANSRYLVKN
        MA S +ARF+TEVAPPQ ++VMRRRT+KVLDTI EEERE   +  +P+S  ++               S++  AS T G N   + +N
Subjt:  MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNE-YPASRRNQ--------------PSSTVPASTTDGANSRYLVKN
AT4G21060.1 Galactosyltransferase family protein2.0e-0558.54Show/hide
Query:  MANSHIARFVTEVAPPQIISVMRRR--TSKVLDTISEEERE
        MA S +ARFV+EVAPPQ ++VMRR     + LDTI EEE +
Subjt:  MANSHIARFVTEVAPPQIISVMRRR--TSKVLDTISEEERE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAATTCTCATATAGCCAGGTTCGTTACCGAGGTTGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCGAAAGTGCTAGACACCATCAGTGAAGAAGA
GAGGGAGTGTAACAAGAATGAGTACCCTGCTTCCCGAAGAAATCAACCATCATCAACTGTCCCTGCTTCAACAACTGATGGTGCCAATTCTAGGTACTTAGTAAAAAATA
TAAATAGATCTTTCTCAATCTCCACATTCAGTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAATTCTCATATAGCCAGGTTCGTTACCGAGGTTGCGCCACCACAGATTATCAGTGTCATGAGACGCCGAACGTCGAAAGTGCTAGACACCATCAGTGAAGAAGA
GAGGGAGTGTAACAAGAATGAGTACCCTGCTTCCCGAAGAAATCAACCATCATCAACTGTCCCTGCTTCAACAACTGATGGTGCCAATTCTAGGTACTTAGTAAAAAATA
TAAATAGATCTTTCTCAATCTCCACATTCAGTCATTGA
Protein sequenceShow/hide protein sequence
MANSHIARFVTEVAPPQIISVMRRRTSKVLDTISEEERECNKNEYPASRRNQPSSTVPASTTDGANSRYLVKNINRSFSISTFSH