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Sed0008447 (gene) of Chayote v1 genome

Gene IDSed0008447
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor PRE6-like
Genome locationLG08:32212926..32214379
RNA-Seq ExpressionSed0008447
SyntenySed0008447
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146747.1 transcription factor PRE6 [Cucumis sativus]2.5e-2577.89Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN+ +A+  ISD QI+DLVSKLQ LIPE+RN   SHK SAS VLQE CNYIRNLHREVDDLSERLSQLLAATENDSAEA IIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

XP_008465587.1 PREDICTED: transcription factor PRE6-like [Cucumis melo]2.9e-2678.95Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN+ +++  ISD QI+DLVSKLQ LIPE+RN   SHKVSAS VLQE CNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

XP_022946595.1 transcription factor PRE6-like [Cucurbita moschata]5.3e-2884.04Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN  S+ +QISD QISDLVSKLQ LIPEIRN+ SHKVSAS VLQE CNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

XP_023546056.1 transcription factor PRE6-like [Cucurbita pepo subsp. pepo]7.0e-2884.04Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN   A  QISD QISDLVSKLQ LIPEIRN+ SHKVSAS VLQE CNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

XP_038886241.1 transcription factor PRE6-like [Benincasa hispida]5.5e-2580Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN+  A   ISD QISDLVSKLQ LIPE+RN   SHKVSAS VLQE CNYIRNLHREVDDLSERLSQLLA+TENDSAEAAIIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

TrEMBL top hitse value%identityAlignment
A0A0A0KDL6 BHLH domain-containing protein1.2e-2577.89Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN+ +A+  ISD QI+DLVSKLQ LIPE+RN   SHK SAS VLQE CNYIRNLHREVDDLSERLSQLLAATENDSAEA IIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

A0A1S3CPL2 transcription factor PRE6-like1.4e-2678.95Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN+ +++  ISD QI+DLVSKLQ LIPE+RN   SHKVSAS VLQE CNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

A0A5D3BPI2 Transcription factor PRE6-like1.4e-2678.95Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN+ +++  ISD QI+DLVSKLQ LIPE+RN   SHKVSAS VLQE CNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRN-SPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

A0A6J1G4C0 transcription factor PRE6-like2.6e-2884.04Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN  S+ +QISD QISDLVSKLQ LIPEIRN+ SHKVSAS VLQE CNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

A0A6J1KGK3 transcription factor PRE6-like2.6e-2884.04Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS  SSRSRN  S+ +QISD QISDLVSKLQ LIPEIRN+ SHKVSAS VLQE CNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIR+LF+
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI71.6e-1957.78Show/hide
Query:  SSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SSRSR+  S+ ++I+D QI DLVSKLQ L+PE R   + +V ++ VLQE C+YIR+LHREVDDLSERL++LLAA +  +A+AA+IR L +
Subjt:  SSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

B8APB5 Transcription factor ILI65.0e-2162.64Show/hide
Query:  SSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS RSR+  S +S+I+D QISDLVSKLQ L+PE R   + +V +S VLQE CNYIR+LH+EVDDLSERLS+LLA ++  SA+AAIIR+L +
Subjt:  SSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

Q0DUR2 Transcription factor ILI65.0e-2162.64Show/hide
Query:  SSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        SS RSR+  S +S+I+D QISDLVSKLQ L+PE R   + +V +S VLQE CNYIR+LH+EVDDLSERLS+LLA ++  SA+AAIIR+L +
Subjt:  SSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

Q338G6 Transcription factor ILI76.1e-1956.67Show/hide
Query:  SSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        S RSR+  S+ ++I+D QI DLVSKLQ L+PE R   + +V ++ VLQE C+YIR+LHREVDDLSERL++LLAA +  +A+AA+IR L +
Subjt:  SSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

Q8GW32 Transcription factor PRE63.4e-2575Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTL
        SS  SSRSR +GS  S+ISD QISDLVSKLQ LIPE+R   S KVSAS VLQE CNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIR+L
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTL

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.4e-2675Show/hide
Query:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTL
        SS  SSRSR +GS  S+ISD QISDLVSKLQ LIPE+R   S KVSAS VLQE CNYIRNLHREVDDLS+RLS+LLA+T+++SAEAAIIR+L
Subjt:  SSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 12.2e-1961.22Show/hide
Query:  MSTRRSSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNS-PSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTL
        MS RRS S  S      S  S+IS+ QI+DL+ KLQ L+PE+R+S  S KVSA+ VLQ+ CNYIRNLHREVDDLSERLS+LLA   +D+A+AA+IR+L
Subjt:  MSTRRSSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNS-PSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTL

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.4e-1858Show/hide
Query:  MSTRRSSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEI-RNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        MS RRS  +S+ SR        ISD Q+ DLVSKL+  +PEI     S KVSAS VLQE CNYIR LHREVD+LS+RLSQLL + + DS EAA+IR+L +
Subjt:  MSTRRSSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEI-RNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI

AT5G15160.1 BANQUO 22.2e-1960Show/hide
Query:  SSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIR-NSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTL
        SSSR     S++S+ISD QI+DL+SKL+  IPEIR N  S+ VSAS VLQE CNYIRNL++E DDLS+RL+QLL + + +S +AA+IR+L
Subjt:  SSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIR-NSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTL

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein3.7e-1959Show/hide
Query:  MSTRRSSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEI-RNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI
        MS RRS  SSS  R        ISD Q+ DLVSKL+ ++PEI +   S K SAS VLQE CNYIRNL+REVD+LSERLSQLL + + DS EAA+IR+L +
Subjt:  MSTRRSSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEI-RNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACCAGAAGATCATCATCATCATCATCTCGCTCCAGAAACAACGGCTCAGCTAATTCTCAAATTTCTGACCGTCAAATCTCTGACCTTGTTTCCAAGTTGCAATG
CCTCATCCCTGAGATTCGTAACTCCCCTTCCCATAAGGTGTCAGCTTCTAATGTGTTACAAGAAATATGCAATTACATAAGAAACTTACATAGGGAGGTGGATGATTTGA
GTGAACGTTTGTCGCAACTTTTGGCTGCCACAGAAAATGACAGTGCTGAGGCTGCTATTATAAGGACTTTATTCATTAATTAA
mRNA sequenceShow/hide mRNA sequence
TTTTACTCTCTCTCTCTCTCTAAATTCAATATTATTACAATTAATATTTCTTATATATATATATATATATATTTATAATAATGTCTACCAGAAGATCATCATCATCATCA
TCTCGCTCCAGAAACAACGGCTCAGCTAATTCTCAAATTTCTGACCGTCAAATCTCTGACCTTGTTTCCAAGTTGCAATGCCTCATCCCTGAGATTCGTAACTCCCCTTC
CCATAAGGTGTCAGCTTCTAATGTGTTACAAGAAATATGCAATTACATAAGAAACTTACATAGGGAGGTGGATGATTTGAGTGAACGTTTGTCGCAACTTTTGGCTGCCA
CAGAAAATGACAGTGCTGAGGCTGCTATTATAAGGACTTTATTCATTAATTAATTAATTAATAATCACTCTTTTCCAATTCCCTACTTGTGACGACG
Protein sequenceShow/hide protein sequence
MSTRRSSSSSSRSRNNGSANSQISDRQISDLVSKLQCLIPEIRNSPSHKVSASNVLQEICNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRTLFIN