CuGenDBv2

Gene ID	Sed0008456
Organism	Sechium edule (Chayote v1)
Description	KRR1 small subunit processome component
Genome location	LG13:17479234..17484877
RNA-Seq Expression	Sed0008456
Synteny	Sed0008456
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005730 - nucleolus (cellular component) GO:0032040 - small-subunit processome (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR024166 - Ribosomal RNA assembly KRR1 IPR036612 - K Homology domain, type 1 superfamily IPR041174 - Krr1, KH1 domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7012057.1 mis3 [Cucurbita argyrosperma subsp. argyrosperma]

6.6e-107

69.94

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM VSTTRKT+DP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLV K+   +                       R+ LVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFK------KYGQGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRR+VE+C+ NKMHPVYNIKIL+MKKELANDP++ANENW+RFLP+FK      K  + K KK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFK------KYGQGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA
        PQP S+IDIQLETGEYFLSDK+KSAKKW   QEKQ+EKTA NKRK+EA+FVP KEP KQD    GDNND+A + K++    KA  KRKAAE+INPEAYIA
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA

Query:  SSSDPPHFKKRSKTSS
        SSSD  HFKKRSK SS
Subjt:  SSSDPPHFKKRSKTSS

XP_004139889.2 KRR1 small subunit processome component homolog [Cucumis sativus]

4.3e-106

70.57

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L LIEGSM VSTTRKTRDP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLV K+   +                       R+ LVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRRVVE+C+ NKMHPVYNIKIL+M+KELANDP++ANENW+RFLP+FKK        + KPKK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA
        PQ  S+IDIQLETGEYFL++K+KSAKKW   QEKQ+EKTA NKRK+EA+FVP KE  KQD K  GD ND+A + KS+    KA  KRKAAETINPEAYIA
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA

Query:  SSSDPPHFKKRSKTSS
        SSSD P FKKRSKTSS
Subjt:  SSSDPPHFKKRSKTSS

XP_022148021.1 KRR1 small subunit processome component [Momordica charantia]

1.1e-109

71.34

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Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM VSTTRKTRDP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLVGK+  ++                       R+HLVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFK------KYGQGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRR+VEDC+ NKMHPVYNIKIL+MKKELANDP++ANENW+RFLP+FK      K  + K KK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFK------KYGQGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAKS-GDNNDLAPVTKSV----KATTKRKAAETINPEAYIA
        PQ  SKIDIQLETGEYFLSDK+KSAKKW   QEKQ+EKTA NKRK+EA+FVP KEP KQD KS GDNND+A + K++    KA  KRKAAETIN E+YIA
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAKS-GDNNDLAPVTKSV----KATTKRKAAETINPEAYIA

Query:  SSSDPPHFKKRSKT
        SSS+ PHFKK+SKT
Subjt:  SSSDPPHFKKRSKT

XP_022952886.1 KRR1 small subunit processome component homolog [Cucurbita moschata]

5.0e-107

69.94

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Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM VSTTRKT+DP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLV K+   +                       R+ LVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRR+VE+C+ NKMHPVYNIKIL+MKKELANDP++ANENW+RFLP+FKK        + K KK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA
        PQP S+IDIQLETGEYFLSDK+KSAKKW   QEKQ+EKTA NKRK+EA+FVP KEP KQD    GDNND+A + K++    KA  KRKAAE+INPEAYIA
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA

Query:  SSSDPPHFKKRSKTSS
        SSSD  HFKKRSK SS
Subjt:  SSSDPPHFKKRSKTSS

XP_023511730.1 KRR1 small subunit processome component homolog [Cucurbita pepo subsp. pepo]

6.6e-107

69.94

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM VSTTRKT+DP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLV K+   +                       R+ LVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRR+VE+C+ NKMHPVYNIKIL+MKKELANDP++ANENW+RFLP+FKK        + K KK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA
        PQP S+IDIQLETGEYFLSDK+KSAKKW   QEKQ+EKTA NKRK+EA+FVP KEP KQD    GDNND+A + K++    KA  KRKAAE+INPEAYIA
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA

Query:  SSSDPPHFKKRSKTSS
        SSSD  HFKKRSK SS
Subjt:  SSSDPPHFKKRSKTSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7G6 KRR1 small subunit processome component

2.1e-106

70.57

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L LIEGSM VSTTRKTRDP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLV K+   +                       R+ LVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRRVVE+C+ NKMHPVYNIKIL+M+KELANDP++ANENW+RFLP+FKK        + KPKK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA
        PQ  S+IDIQLETGEYFL++K+KSAKKW   QEKQ+EKTA NKRK+EA+FVP KE  KQD K  GD ND+A + KS+    KA  KRKAAETINPEAYIA
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA

Query:  SSSDPPHFKKRSKTSS
        SSSD P FKKRSKTSS
Subjt:  SSSDPPHFKKRSKTSS

A0A5D3CP78 KRR1 small subunit processome component

5.1e-105

70.03

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L LIEGSM VSTTRKTRDP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLV K+   +                       R+ LVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRRVVE+C+ NKMHPVYNIKIL+MKKELANDP++ANENW+RFLP+FKK        + KPKK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKE-PAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYI
        PQ  S+IDIQLETGEYFL++K+KSAKKW   QEKQ+EKTA NKRK+EA+FVP KE P +QD +  GD ND+A + K++    KA  KRKAAETINPEAYI
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKE-PAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYI

Query:  ASSSDPPHFKKRSKTSS
        ASSSD P FKKRSKTSS
Subjt:  ASSSDPPHFKKRSKTSS

A0A6J1D441 KRR1 small subunit processome component

5.2e-110

71.34

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Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM VSTTRKTRDP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLVGK+  ++                       R+HLVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFK------KYGQGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRR+VEDC+ NKMHPVYNIKIL+MKKELANDP++ANENW+RFLP+FK      K  + K KK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFK------KYGQGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAKS-GDNNDLAPVTKSV----KATTKRKAAETINPEAYIA
        PQ  SKIDIQLETGEYFLSDK+KSAKKW   QEKQ+EKTA NKRK+EA+FVP KEP KQD KS GDNND+A + K++    KA  KRKAAETIN E+YIA
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAKS-GDNNDLAPVTKSV----KATTKRKAAETINPEAYIA

Query:  SSSDPPHFKKRSKT
        SSS+ PHFKK+SKT
Subjt:  SSSDPPHFKKRSKT

A0A6J1GLG6 KRR1 small subunit processome component

2.4e-107

69.94

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM VSTTRKT+DP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLV K+   +                       R+ LVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRR+VE+C+ NKMHPVYNIKIL+MKKELANDP++ANENW+RFLP+FKK        + K KK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA
        PQP S+IDIQLETGEYFLSDK+KSAKKW   QEKQ+EKTA NKRK+EA+FVP KEP KQD    GDNND+A + K++    KA  KRKAAE+INPEAYIA
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA

Query:  SSSDPPHFKKRSKTSS
        SSSD  HFKKRSK SS
Subjt:  SSSDPPHFKKRSKTSS

A0A6J1HWB5 KRR1 small subunit processome component

4.6e-106

69.62

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM VSTTRKT+DP+IIVKA DLIKLLSRSVPAPQAIKIL DEMQCDIIKIGNLV K+   +                       R+ LVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP
        TLKALEILTGCY+ VQGNTVAAMGSFKGLKQVRR+VE+C+ NKMHPVYNIKIL+MKKELANDP++A+ENW+RFLP+FKK        + K KK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA
        PQP S+IDIQLETGEYFLSDK+KSAKKW   QEKQ+EKTA NKRK+EASFVP KE  KQD K  GDNND+A + K++    KA  KRKAAE+INPEAYIA
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDAK-SGDNNDLAPVTKSV----KATTKRKAAETINPEAYIA

Query:  SSSDPPHFKKRSKTSS
         SSD  HFKKRSK SS
Subjt:  SSSDPPHFKKRSKTSS

SwissProt top hits

e value

%identity

Alignment

B3LU25 KRR1 small subunit processome component

1.3e-62

52.31

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM V TTRKT DP II+KA DLIKLL+RSVP PQA+KIL D+M CD+IKIGN V  +   +                       R+ LVGP+G+
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP
        TLKALE+LT CY+ VQGNTV+AMG FKGLK+VRRVVEDC+ N +HP+Y+IK L++K+ELA  P +ANE+W RFLP FKK    + KP       KK YTP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP

Query:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA
        FPP Q   K+D+++E+GEYFLS +EK  KK    +EKQ E+    + ++   F+  +E A
Subjt:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA

B5VEQ2 KRR1 small subunit processome component

1.3e-62

52.31

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM V TTRKT DP II+KA DLIKLL+RSVP PQA+KIL D+M CD+IKIGN V  +   +                       R+ LVGP+G+
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP
        TLKALE+LT CY+ VQGNTV+AMG FKGLK+VRRVVEDC+ N +HP+Y+IK L++K+ELA  P +ANE+W RFLP FKK    + KP       KK YTP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP

Query:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA
        FPP Q   K+D+++E+GEYFLS +EK  KK    +EKQ E+    + ++   F+  +E A
Subjt:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA

C8Z430 KRR1 small subunit processome component

1.3e-62

52.31

Show/hide

Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM V TTRKT DP II+KA DLIKLL+RSVP PQA+KIL D+M CD+IKIGN V  +   +                       R+ LVGP+G+
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP
        TLKALE+LT CY+ VQGNTV+AMG FKGLK+VRRVVEDC+ N +HP+Y+IK L++K+ELA  P +ANE+W RFLP FKK    + KP       KK YTP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP

Query:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA
        FPP Q   K+D+++E+GEYFLS +EK  KK    +EKQ E+    + ++   F+  +E A
Subjt:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA

E7LRT8 KRR1 small subunit processome component

1.3e-62

52.31

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Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM V TTRKT DP II+KA DLIKLL+RSVP PQA+KIL D+M CD+IKIGN V  +   +                       R+ LVGP+G+
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP
        TLKALE+LT CY+ VQGNTV+AMG FKGLK+VRRVVEDC+ N +HP+Y+IK L++K+ELA  P +ANE+W RFLP FKK    + KP       KK YTP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP

Query:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA
        FPP Q   K+D+++E+GEYFLS +EK  KK    +EKQ E+    + ++   F+  +E A
Subjt:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA

P25586 KRR1 small subunit processome component

1.3e-62

52.31

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Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM V TTRKT DP II+KA DLIKLL+RSVP PQA+KIL D+M CD+IKIGN V  +   +                       R+ LVGP+G+
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP
        TLKALE+LT CY+ VQGNTV+AMG FKGLK+VRRVVEDC+ N +HP+Y+IK L++K+ELA  P +ANE+W RFLP FKK    + KP       KK YTP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKK--YGQGKP-------KKAYTP

Query:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA
        FPP Q   K+D+++E+GEYFLS +EK  KK    +EKQ E+    + ++   F+  +E A
Subjt:  FPPPQPLSKIDIQLETGEYFLSDKEKSAKK---WQEKQSEKTAGNKRKKEASFVPTKEPA

Arabidopsis top hits

e value

%identity

Alignment

AT5G08420.1 RNA-binding KH domain-containing protein

8.6e-89

58.81

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Query:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS
        L L+EGSM VSTTRKTRDP+IIVKA DLIKLLSRSVPAPQAIKIL DE+QCDIIKIGNLV  +   +                       R+ LVGP+ S
Subjt:  LRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVSSVMDIWLRNLRKHLVGPDGS

Query:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP
        TLKALEILT CY+ VQG+TVAAMG FKGLKQ+RR+VEDC+ N MHPVY+IK L+MKKEL  DP++ANE+W+RFLP F+K        + K KK YTPFPP
Subjt:  TLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYG------QGKPKKAYTPFPP

Query:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDA---KSGD-NNDLAPVTKSVKATTK-----RKAAETINPE
        PQP SKID+QLE+GEYF+SDK+KS KKW   QEKQSEK+  NKRK++ASF+P +EP   ++   KS D  ND+  +T S+K+ TK     +K  E +N E
Subjt:  PQPLSKIDIQLETGEYFLSDKEKSAKKW---QEKQSEKTAGNKRKKEASFVPTKEPAKQDA---KSGD-NNDLAPVTKSVKATTK-----RKAAETINPE

Query:  AYIAS-SSDPPHFKKRSK
         YIA  SS      K+SK
Subjt:  AYIAS-SSDPPHFKKRSK

Sequences

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CDS sequence

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ATGAGTATGGTTGGATATCATTATTTCTTTGCTTCCACAATTTTCAAAAAAGAAAAAAAAAAGCATAAATCGAGTAAAAGTTGGAAATATCTAAGATTAATTGAAGGATC
AATGAAAGTTTCAACGACTAGAAAGACTAGGGATCCGTTTATTATTGTCAAGGCAATGGATCTTATTAAGCTTTTGTCAAGAAGTGTTCCTGCTCCACAGGCAATAAAAA
TTCTGGGCGATGAAATGCAATGTGATATCATTAAGATTGGGAACTTAGTAGGCAAGAGGGTAAGTGTCATTTATTACATAGTTTGTTACCGATTGATTTTATGTGTTTCT
TCTGTTATGGACATATGGCTAAGAAATTTAAGGAAACATCTTGTGGGCCCTGATGGATCGACTTTAAAGGCACTTGAAATATTGACAGGATGCTATCTTTGCGTTCAGGG
CAACACAGTTGCTGCCATGGGTTCATTCAAAGGTCTAAAGCAAGTTAGAAGGGTAGTGGAAGACTGTATAACGAATAAGATGCATCCTGTATATAATATTAAGATTCTCG
TGATGAAGAAAGAGCTTGCTAATGATCCATCAATTGCAAATGAAAATTGGGAAAGGTTTCTTCCACAATTCAAGAAGTATGGTCAAGGTAAACCAAAGAAGGCGTATACG
CCTTTCCCTCCTCCTCAACCACTAAGCAAGATTGATATACAATTGGAAACTGGAGAGTACTTTTTAAGTGACAAAGAGAAGTCAGCAAAGAAATGGCAAGAGAAGCAGTC
AGAAAAAACGGCTGGAAACAAGCGAAAAAAAGAAGCTTCCTTTGTTCCTACTAAGGAGCCCGCAAAGCAGGATGCAAAATCTGGAGATAACAATGATTTAGCCCCAGTAA
CAAAGTCCGTAAAGGCAACAACGAAACGAAAAGCTGCAGAAACTATCAATCCAGAAGCTTATATCGCATCATCTAGCGATCCGCCGCATTTCAAAAAGAGATCCAAGACT
TCATCGTAG

mRNA sequence

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Protein sequence

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MSMVGYHYFFASTIFKKEKKKHKSSKSWKYLRLIEGSMKVSTTRKTRDPFIIVKAMDLIKLLSRSVPAPQAIKILGDEMQCDIIKIGNLVGKRVSVIYYIVCYRLILCVS
SVMDIWLRNLRKHLVGPDGSTLKALEILTGCYLCVQGNTVAAMGSFKGLKQVRRVVEDCITNKMHPVYNIKILVMKKELANDPSIANENWERFLPQFKKYGQGKPKKAYT
PFPPPQPLSKIDIQLETGEYFLSDKEKSAKKWQEKQSEKTAGNKRKKEASFVPTKEPAKQDAKSGDNNDLAPVTKSVKATTKRKAAETINPEAYIASSSDPPHFKKRSKT
SS

Sed0008456 (gene) of Chayote v1 genome