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Sed0008558 (gene) of Chayote v1 genome

Gene IDSed0008558
OrganismSechium edule (Chayote v1)
DescriptionF-box domain-containing protein
Genome locationLG07:37521942..37522577
RNA-Seq ExpressionSed0008558
SyntenySed0008558
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR006527 - F-box associated domain, type 1
IPR015915 - Kelch-type beta propeller


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK13067.1 putative F-box protein [Cucumis melo var. makuwa]7.8e-4547.66Show/hide
Query:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL
        +AR S   + S +++EIFA G+  Q WT V  +P+ V      YFNG LYW+       +     +YRLDIE E L++IS PQ+      FGV DG LYL
Subjt:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL

Query:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE
        T S NN   K+ VWKM+++FSW K F  S+P+NL  P  P   P    +L  IK+ EDG+ILCL + +HLILYDPKTK  +ILTDQ V++ K++ +H I+
Subjt:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE

Query:  CLHFNSLHNILAGN
          +FNSL NILAGN
Subjt:  CLHFNSLHNILAGN

XP_004134745.1 F-box protein At3g07870 [Cucumis sativus]5.6e-4346.26Show/hide
Query:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL
        +AR S   + S +++EIF  G+  Q WT V  +P+ V      YF G LYW+       +     +YRLD+E EKL++IS PQ       FGV DG LYL
Subjt:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL

Query:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE
        T S NN   K+ VWKM+++FSW K F  S P+NL  P  P   P    +L  IK+ EDG+ILCL + +HLILYDPKTK  +ILTDQ V++ K++ +H I+
Subjt:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE

Query:  CLHFNSLHNILAGN
          +FNSL +ILAGN
Subjt:  CLHFNSLHNILAGN

XP_008439950.1 PREDICTED: putative F-box protein At3g21120 [Cucumis melo]1.3e-4447.66Show/hide
Query:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL
        +AR S   + S +++EIFA G+  Q WT V  +P+ V      YFNG LYW+       +     +YRLDIE E L++IS PQ+      FGV DG LYL
Subjt:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL

Query:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE
        T S NN   K+ VWKM+++FSW K F  S+P+NL  P  P   P    +L  IK+ EDG+ILCL + +HLILYDPKTK  +ILTDQ V++ K++ +H I+
Subjt:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE

Query:  CLHFNSLHNILAGN
          +FNSL NILAGN
Subjt:  CLHFNSLHNILAGN

XP_038880514.1 putative F-box protein At1g46984 [Benincasa hispida]7.5e-4045.37Show/hide
Query:  VIEIFAIGTRGQWTHVDMIPASVSNHANAYFNGSLYWIVQSMERD---FDFMYRLDIETEKLDQISLP----QNSTWPICFGVMDGILYLTASPNNRFSK
        ++EIFA GT  +WT V  +P  ++ +   YFNG LYW+      +    D +YRLD+E +K  QIS P        +P   GV +  LYLT    +   +
Subjt:  VIEIFAIGTRGQWTHVDMIPASVSNHANAYFNGSLYWIVQSMERD---FDFMYRLDIETEKLDQISLP----QNSTWPICFGVMDGILYLTASPNNRFSK

Query:  FHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIECLHFNSLHNI
        +HVWKMEEDFSW K F  + P+N+H    P   PI  + L+LIK+ EDG ILCL + ++LILYDPKT+  ++LTDQ  EI K++W++ I+  +FNSLHNI
Subjt:  FHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIECLHFNSLHNI

Query:  LAGNC
        LAG C
Subjt:  LAGNC

XP_038883771.1 putative F-box protein At1g60370 [Benincasa hispida]2.5e-4347.39Show/hide
Query:  MARISRLKNGSASVIEIFAIGTRGQWTHVDMIPASVSNHANAYFNGSLYWIVQSME-RDF-DFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYLTA
        +AR S L++ S + +EIFA GT  +WT V ++P+ V      YFNG LYW V  ++ RD  + +YRLDIE EKL++IS P        FGV DG LYLT 
Subjt:  MARISRLKNGSASVIEIFAIGTRGQWTHVDMIPASVSNHANAYFNGSLYWIVQSME-RDF-DFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYLTA

Query:  SPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIECL
              + + VWKMEE+ SW K F  S P+NL  P+   P+ +   +L+ IK  EDG+ILCL +   LILYDPKTK+ KILT+Q VE  +++ +H I+  
Subjt:  SPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIECL

Query:  HFNSLHNILAG
        +FNSL NILAG
Subjt:  HFNSLHNILAG

TrEMBL top hitse value%identityAlignment
A0A0A0KJY9 F-box domain-containing protein2.7e-4346.26Show/hide
Query:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL
        +AR S   + S +++EIF  G+  Q WT V  +P+ V      YF G LYW+       +     +YRLD+E EKL++IS PQ       FGV DG LYL
Subjt:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL

Query:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE
        T S NN   K+ VWKM+++FSW K F  S P+NL  P  P   P    +L  IK+ EDG+ILCL + +HLILYDPKTK  +ILTDQ V++ K++ +H I+
Subjt:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE

Query:  CLHFNSLHNILAGN
          +FNSL +ILAGN
Subjt:  CLHFNSLHNILAGN

A0A0A0M1M5 F-box domain-containing protein9.9e-3842.65Show/hide
Query:  VIEIFAIGTRGQWTHVDMIPASVSNHANAYFNGSLYWIVQ------SMERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYLTASPNNRFSKF
        +++IFA GT  +WT V  +P  ++ +   Y NG LYW+         +    + +YRLD++ EK ++IS P +        V +G LYLT    +    +
Subjt:  VIEIFAIGTRGQWTHVDMIPASVSNHANAYFNGSLYWIVQ------SMERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYLTASPNNRFSKF

Query:  HVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIECLHFNSLHNIL
        H WKMEEDFSW+K F  + P+N+H      P     + L+LIK  EDG ILCLY+ I LILYDP T+  +ILT+Q  EI + +W+H IE   FNSLHNIL
Subjt:  HVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIECLHFNSLHNIL

Query:  AGNC
        AG C
Subjt:  AGNC

A0A1S3B0Q6 putative F-box protein At3g211206.4e-4547.66Show/hide
Query:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL
        +AR S   + S +++EIFA G+  Q WT V  +P+ V      YFNG LYW+       +     +YRLDIE E L++IS PQ+      FGV DG LYL
Subjt:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL

Query:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE
        T S NN   K+ VWKM+++FSW K F  S+P+NL  P  P   P    +L  IK+ EDG+ILCL + +HLILYDPKTK  +ILTDQ V++ K++ +H I+
Subjt:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE

Query:  CLHFNSLHNILAGN
          +FNSL NILAGN
Subjt:  CLHFNSLHNILAGN

A0A5D3CIX9 Putative F-box protein1.4e-3642.58Show/hide
Query:  VIEIFAIGTRGQWTHVDMIPASVSNHANAYFNGSLYWIVQSME------RDF-DFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYLTASPNNRFSK
        +++IFA GT  +WT +  +P  ++ +   YFNG LYW+    +       D+   +YRLD+  EK  +IS+P     P   GV +G LYLT    +    
Subjt:  VIEIFAIGTRGQWTHVDMIPASVSNHANAYFNGSLYWIVQSME------RDF-DFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYLTASPNNRFSK

Query:  FHVWKMEEDFSWTKLFNFSTPKN----LHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIECLHFNS
        +HVWKM+EDFSW+K F  + P+N    LHR  P        + L+L+K  EDG ILCL + I LI+YDPKT++ +ILTDQ  EI + +W H IE   FNS
Subjt:  FHVWKMEEDFSWTKLFNFSTPKN----LHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIECLHFNS

Query:  LHNILAGNC
        LHN L G C
Subjt:  LHNILAGNC

A0A5D3CM94 Putative F-box protein3.8e-4547.66Show/hide
Query:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL
        +AR S   + S +++EIFA G+  Q WT V  +P+ V      YFNG LYW+       +     +YRLDIE E L++IS PQ+      FGV DG LYL
Subjt:  MARISRLKNGSASVIEIFAIGTRGQ-WTHVDMIPASVSNHANAYFNGSLYWIVQS---MERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYL

Query:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE
        T S NN   K+ VWKM+++FSW K F  S+P+NL  P  P   P    +L  IK+ EDG+ILCL + +HLILYDPKTK  +ILTDQ V++ K++ +H I+
Subjt:  TASPNNRFSKFHVWKMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIE

Query:  CLHFNSLHNILAGN
          +FNSL NILAGN
Subjt:  CLHFNSLHNILAGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGAATCTCTCGTTTAAAAAACGGATCTGCAAGCGTAATAGAGATTTTTGCAATTGGCACAAGAGGCCAATGGACACATGTTGACATGATTCCAGCTAGTGTTTC
GAATCACGCCAATGCTTACTTCAACGGAAGCCTTTATTGGATTGTGCAATCCATGGAGCGTGATTTTGATTTTATGTACCGTTTGGATATAGAAACAGAAAAATTGGATC
AAATTTCTTTACCACAAAATTCCACATGGCCAATTTGTTTTGGAGTTATGGACGGTATCCTCTATCTAACTGCTTCCCCCAACAACCGTTTTTCTAAGTTTCATGTGTGG
AAGATGGAAGAAGATTTTTCATGGACTAAATTATTTAATTTTTCCACACCAAAAAATTTGCATCGCCCAAAACCTCCAGCACCTTTCCCTATACAAACATTTAAACTTCG
GCTCATCAAAAGTTATGAAGATGGACGGATCTTATGTCTTTATTCTAATATCCATTTAATATTGTATGACCCCAAGACTAAAAAGAAGAAGATACTAACCGATCAAGTTG
TTGAAATTACCAAATATATATGGATTCATCCGATCGAGTGTCTCCATTTCAATTCGCTCCACAACATCTTGGCGGGAAACTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGAATCTCTCGTTTAAAAAACGGATCTGCAAGCGTAATAGAGATTTTTGCAATTGGCACAAGAGGCCAATGGACACATGTTGACATGATTCCAGCTAGTGTTTC
GAATCACGCCAATGCTTACTTCAACGGAAGCCTTTATTGGATTGTGCAATCCATGGAGCGTGATTTTGATTTTATGTACCGTTTGGATATAGAAACAGAAAAATTGGATC
AAATTTCTTTACCACAAAATTCCACATGGCCAATTTGTTTTGGAGTTATGGACGGTATCCTCTATCTAACTGCTTCCCCCAACAACCGTTTTTCTAAGTTTCATGTGTGG
AAGATGGAAGAAGATTTTTCATGGACTAAATTATTTAATTTTTCCACACCAAAAAATTTGCATCGCCCAAAACCTCCAGCACCTTTCCCTATACAAACATTTAAACTTCG
GCTCATCAAAAGTTATGAAGATGGACGGATCTTATGTCTTTATTCTAATATCCATTTAATATTGTATGACCCCAAGACTAAAAAGAAGAAGATACTAACCGATCAAGTTG
TTGAAATTACCAAATATATATGGATTCATCCGATCGAGTGTCTCCATTTCAATTCGCTCCACAACATCTTGGCGGGAAACTGTTGA
Protein sequenceShow/hide protein sequence
MARISRLKNGSASVIEIFAIGTRGQWTHVDMIPASVSNHANAYFNGSLYWIVQSMERDFDFMYRLDIETEKLDQISLPQNSTWPICFGVMDGILYLTASPNNRFSKFHVW
KMEEDFSWTKLFNFSTPKNLHRPKPPAPFPIQTFKLRLIKSYEDGRILCLYSNIHLILYDPKTKKKKILTDQVVEITKYIWIHPIECLHFNSLHNILAGNC