CuGenDBv2

Gene ID	Sed0008576
Organism	Sechium edule (Chayote v1)
Description	Ribosomal L18p/L5e family protein
Genome location	LG09:4222208..4223692
RNA-Seq Expression	Sed0008576
Synteny	Sed0008576
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008097 - 5S rRNA binding (molecular function)
InterPro domains	IPR005484 - Ribosomal protein L18

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8646622.1 hypothetical protein Csa_005380 [Cucumis sativus]

1.7e-52

90.08

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS NQNHLLRLVLSCRK+TAQVTNPATSSIIAMASSSE EF+AY RSKLHRFPRSNNFWDSK+ASRVGEKL  RL+EIGVSDVRIDLAEELSRP+YYRK+
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSV+RSGVAVDGAEKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

XP_004140885.1 uncharacterized protein LOC101204363 [Cucumis sativus]

1.7e-52

90.08

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS NQNHLLRLVLSCRK+TAQVTNPATSSIIAMASSSE EF+AY RSKLHRFPRSNNFWDSK+ASRVGEKL  RL+EIGVSDVRIDLAEELSRP+YYRK+
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSV+RSGVAVDGAEKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

XP_038884094.1 uncharacterized protein LOC120075027 isoform X1 [Benincasa hispida]

4.2e-51

87.6

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS +QNHLLRLVLSCRK+TAQVTNPATSSI+AMASSSE EF+AY RSKLHRFPRSNNFWDSK+ASRVGEKL  RL+EIGVSDVRIDLAEE SRP+YYRK+
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSV+RSGVAVDGAEKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

XP_038884097.1 uncharacterized protein LOC120075027 isoform X4 [Benincasa hispida]

4.2e-51

87.6

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS +QNHLLRLVLSCRK+TAQVTNPATSSI+AMASSSE EF+AY RSKLHRFPRSNNFWDSK+ASRVGEKL  RL+EIGVSDVRIDLAEE SRP+YYRK+
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSV+RSGVAVDGAEKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

XP_038884098.1 uncharacterized protein LOC120075027 isoform X5 [Benincasa hispida]

4.2e-51

87.6

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS +QNHLLRLVLSCRK+TAQVTNPATSSI+AMASSSE EF+AY RSKLHRFPRSNNFWDSK+ASRVGEKL  RL+EIGVSDVRIDLAEE SRP+YYRK+
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSV+RSGVAVDGAEKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KE39 Uncharacterized protein

8.2e-53

90.08

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS NQNHLLRLVLSCRK+TAQVTNPATSSIIAMASSSE EF+AY RSKLHRFPRSNNFWDSK+ASRVGEKL  RL+EIGVSDVRIDLAEELSRP+YYRK+
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSV+RSGVAVDGAEKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

A0A1S4DVU4 uncharacterized protein LOC103488672

2.6e-51

87.6

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS NQNHLLRLVLSCRK+TAQVTNPATSSIIAMASSSE EF+AY RSKLHRFPRSNNFWDSK+ASRVG KL  RL+EIGVSDVRIDLAEELSRP+YYRK+
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSV+RSG+AVDG EKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

A0A5D3BWW4 Uncharacterized protein

2.6e-51

87.6

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS NQNHLLRLVLSCRK+TAQVTNPATSSIIAMASSSE EF+AY RSKLHRFPRSNNFWDSK+ASRVG KL  RL+EIGVSDVRIDLAEELSRP+YYRK+
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSV+RSG+AVDG EKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

A0A6J1EVG7 uncharacterized protein LOC111436340

1.0e-50

89.26

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS NQNHLLRLVLSCRK+TAQVTNP TS+IIAMASSSE EF+AYNRSKLHRFPRSNNFWDSKIASRVGEKL  RL+EIGVSDVRIDLAEELSRPV YR  
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSVRRSGVAV+GAEKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

A0A6J1JZ79 uncharacterized protein LOC111488745

2.9e-50

88.43

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Query:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL
        MS NQNHLLRLVLSCRK+TAQVTNP TS+IIAMASSSE EF+AY  SKLHRFPRSNNFWDSKIASRVGEKL  RL+EIGVSDVRIDLAEELSRPVYYR  
Subjt:  MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKL

Query:  VLPLFDSVRRSGVAVDGAEKL
        VLPLFDSVRRSGVAV+GAEKL
Subjt:  VLPLFDSVRRSGVAVDGAEKL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G43310.1 Ribosomal L18p/L5e family protein

1.3e-42

70.59

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Query:  TNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKLVL
        T+++HLL+LVLSCRK+TAQVT P +S+IIAMASSSE EFLA +R+ L+RFP SN+FWDSK ASRVGEKL LRLRE+GV  V ID  EE+SRP+++RK VL
Subjt:  TNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKLVL

Query:  PLFDSVRRSGVAVDGAEKL
        PLFDSVRR+G+ VDG E+L
Subjt:  PLFDSVRRSGVAVDGAEKL

Sequences

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CDS sequence

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ATGTCCACAAACCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAGTCACCGCTCAGGTCACCAATCCGGCCACCTCCTCCATCATCGCCATGGCCTCCTCCTC
CGAGCACGAGTTTCTCGCCTACAACCGCTCCAAGCTCCACCGCTTCCCTCGATCCAACAACTTCTGGGACTCCAAAATCGCCTCTCGCGTCGGCGAGAAGCTCGCCCTCC
GTCTGAGAGAGATCGGCGTCTCCGATGTCCGCATCGACCTCGCCGAGGAGCTCTCTCGCCCGGTCTACTATCGGAAGTTGGTTTTGCCGCTCTTCGATTCCGTTCGCCGC
TCCGGCGTCGCTGTTGATGGCGCTGAGAAGCTCTGA

mRNA sequence

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GAAGAAGAGGAAATTGGAAGCCCTAAATAAATACGCCCATTTCATTCCATGTCCACAAACCAGAACCACCTCCTCCGCCTGGTTCTTTCCTGCCGGAAAGTCACCGCTCA
GGTCACCAATCCGGCCACCTCCTCCATCATCGCCATGGCCTCCTCCTCCGAGCACGAGTTTCTCGCCTACAACCGCTCCAAGCTCCACCGCTTCCCTCGATCCAACAACT
TCTGGGACTCCAAAATCGCCTCTCGCGTCGGCGAGAAGCTCGCCCTCCGTCTGAGAGAGATCGGCGTCTCCGATGTCCGCATCGACCTCGCCGAGGAGCTCTCTCGCCCG
GTCTACTATCGGAAGTTGGTTTTGCCGCTCTTCGATTCCGTTCGCCGCTCCGGCGTCGCTGTTGATGGCGCTGAGAAGCTCTGAACAGATTAGAACCATGACACAGTCCT
AGTAAAGTTTGGTTGGTTCGAGTCATGGCAAGGGAGGTCAATTACATTCCTGGTGTTTGGCAACATTGACCGATGCGAAAACACATTGGGCGAGATTCGACGACCATCCA
TGAAACCCACCACTCGAGGAATTGACGATATCATGTGGGGTTCTAAGTGTCACCATTGACAGAGCTACCTACTGGCACGAGACATTGCCCTAAAAGTTGTGTTGCTTATT
GCTATGGTGCTTCACCCCATGACGTTTGGCGAGCAAGTTATACTTTGATTGTGTTTCTTTGGTTGTCTTTCCTTGTCAACATTGTTGACCATTTGTTGAATGCTCTTTTT
GGCGTGTAAGTTTTTTTTTTTGTTAAGAAGCTCCTTTATGCAACAAGTTTCTCCTTCTACATCCTCTTTTCAACAACATAATCGAGCAAGACACTGCACTTTCCTTTGCC
TAGGTGACACACCTTACTCTTTCACCTATATGATTGGCGATGAGCTTAGTCTTC

Protein sequence

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MSTNQNHLLRLVLSCRKVTAQVTNPATSSIIAMASSSEHEFLAYNRSKLHRFPRSNNFWDSKIASRVGEKLALRLREIGVSDVRIDLAEELSRPVYYRKLVLPLFDSVRR
SGVAVDGAEKL

Sed0008576 (gene) of Chayote v1 genome