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Sed0008624 (gene) of Chayote v1 genome

Gene IDSed0008624
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG04:35153884..35154494
RNA-Seq ExpressionSed0008624
SyntenySed0008624
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ONI02519.1 hypothetical protein PRUPE_6G203400 [Prunus persica]1.9e-0728.57Show/hide
Query:  RKNWRPPRDHLLKINTHATIYLQANRCGIEVIVHNKT----------REGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLIIHEALTLATTLT
        ++ W+PP ++ LKIN            G+ V+V + T          R G  LA++ G++ V  E++A  + + L+     R+ +G ++ +  +L T +T
Subjt:  RKNWRPPRDHLLKINTHATIYLQANRCGIEVIVHNKT----------REGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLIIHEALTLATTLT

Query:  KVHFSWCARDANGLAHHLARIAAEEVLNANWME
           F+   R ANG+AH LAR A     +  W E
Subjt:  KVHFSWCARDANGLAHHLARIAAEEVLNANWME

XP_023904177.1 uncharacterized protein LOC112015942 [Quercus suber]4.1e-0728.08Show/hide
Query:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI
        WRPP     K+N  A I+  + R G   ++ N+                          R+ +  AVD GF E+ +E ++ +V   L       + VG +
Subjt:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI

Query:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMED
        + +   L + L +V FSW  RD N +AH LA+ A     +  WMED
Subjt:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMED

XP_030922950.1 uncharacterized protein LOC115949814 [Quercus lobata]4.9e-0826.42Show/hide
Query:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHN-------------------------KTREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI
        WRPP   LLK+N     + + N+ G+ +I+ N                          TR  +  A++LGF  + VE +   + + +++   S +  G I
Subjt:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHN-------------------------KTREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI

Query:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLREDYILDV
        + +  +L +  + V F    R  NG+AH LAR A   +L+  WME +L +  + Y  D+
Subjt:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLREDYILDV

XP_030936105.1 uncharacterized protein LOC115961232 [Quercus lobata]1.9e-0727.81Show/hide
Query:  ERKNWRPPRDHLLKINTHATIYLQANRCGIEVIVHN-------------------------KTREGVALAVDLGFREVRVETNASHVASFLQKREFSRTE
        ++  W PP  +  KIN    I+   NR GI V++ N                              + LA D+G   V +E ++  V   L+  +     
Subjt:  ERKNWRPPRDHLLKINTHATIYLQANRCGIEVIVHN-------------------------KTREGVALAVDLGFREVRVETNASHVASFLQKREFSRTE

Query:  VGLIIHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDV
         GL+I +A TLA   ++V +S   R+ N +AH LA++AA       WME+V
Subjt:  VGLIIHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDV

XP_030970512.1 uncharacterized protein LOC115990884 [Quercus lobata]1.4e-0727.81Show/hide
Query:  ERKNWRPPRDHLLKINTHATIYLQANRCGIEVIVHN-------------------------KTREGVALAVDLGFREVRVETNASHVASFLQKREFSRTE
        ++  W PP  +  KIN    I+   NR GI V++ N                              + LA D+G   V +E ++  V   L+  +     
Subjt:  ERKNWRPPRDHLLKINTHATIYLQANRCGIEVIVHN-------------------------KTREGVALAVDLGFREVRVETNASHVASFLQKREFSRTE

Query:  VGLIIHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDV
         GL+I +A TLA   ++V +S   R+ N +AH LA++AA       WME+V
Subjt:  VGLIIHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDV

TrEMBL top hitse value%identityAlignment
A0A2N9ECP4 RNase H domain-containing protein6.2e-0931.45Show/hide
Query:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI
        W+PP    +KIN    ++      GI VI+ N                          TR  V LA+DLGF EV VE ++ ++   L + E S T  G I
Subjt:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI

Query:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWME----DVLENLREDY
        I++A   + +L  V F    RD N +AH LA+ A    L   WME    D+++ L  D+
Subjt:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWME----DVLENLREDY

A0A2N9EK22 Uncharacterized protein1.3e-0929.11Show/hide
Query:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI
        W+PP  H  KIN    ++ + N  GI V+V NK                          +  V    ++G +E   E ++  + + L       T  GL+
Subjt:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI

Query:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLREDYILD
        I +A +LA  L    F+   R  NGLAH LAR+A    +   WMEDV   L++ Y+ D
Subjt:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLREDYILD

A0A2N9EQW7 Reverse transcriptase domain-containing protein1.4e-0828.1Show/hide
Query:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI
        W+PP  H  KIN    ++ + N  GI ++V NK                          +  V    ++G +E   E ++  + + L       T  GL+
Subjt:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI

Query:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLRE
        I +A +LA  L    F+   R  NGLAH LAR+A    +   WMEDV   L++
Subjt:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLRE

A0A2N9G3I8 Reverse transcriptase domain-containing protein2.1e-0928.75Show/hide
Query:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK---------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVG
        W+PP  H  KIN    ++ + N  GI V+V NK                            +  V    ++G +E   E ++  + + L       T  G
Subjt:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK---------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVG

Query:  LIIHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLREDYILD
        L+I +A +LA  L    F+   R  NGLAH LAR+A    +   WMEDV   L++ Y+ D
Subjt:  LIIHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLREDYILD

A0A2N9GYK3 Uncharacterized protein1.3e-0929.11Show/hide
Query:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI
        W+PP  H  KIN    ++ + N  GI V+V NK                          +  V    ++G +E   E ++  + + L       T  GL+
Subjt:  WRPPRDHLLKINTHATIYLQANRCGIEVIVHNK-------------------------TREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEVGLI

Query:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLREDYILD
        I +A +LA  L    F+   R  NGLAH LAR+A    +   WMEDV   L++ Y+ D
Subjt:  IHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLREDYILD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCATTTGGCTTACAAGGAGTATGTCAAATGGAGGATGTCAAATCAGTTTCTACAAGGGGTTCAGATGGATGCTATGTTGGGAGCGGATCCAGTAATGGAAAGGAA
AAATTGGCGGCCACCTAGGGACCATCTTTTGAAAATCAATACTCATGCAACAATTTATCTTCAAGCTAATAGATGTGGAATTGAGGTGATTGTGCATAACAAGACTCGGG
AGGGAGTAGCATTGGCTGTGGATTTGGGTTTTAGGGAGGTTAGAGTGGAAACAAACGCATCTCATGTGGCTTCTTTTCTTCAAAAACGCGAGTTTAGTAGAACTGAAGTG
GGTTTGATCATACACGAGGCTTTGACCTTAGCTACAACGTTGACGAAGGTACATTTTTCATGGTGTGCAAGAGATGCCAACGGTCTTGCTCATCACCTAGCTCGTATCGC
AGCAGAAGAGGTTTTGAATGCTAATTGGATGGAAGATGTTCTAGAGAATCTTAGAGAAGATTACATACTTGACGTGACGAATTCCCTTATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCATTTGGCTTACAAGGAGTATGTCAAATGGAGGATGTCAAATCAGTTTCTACAAGGGGTTCAGATGGATGCTATGTTGGGAGCGGATCCAGTAATGGAAAGGAA
AAATTGGCGGCCACCTAGGGACCATCTTTTGAAAATCAATACTCATGCAACAATTTATCTTCAAGCTAATAGATGTGGAATTGAGGTGATTGTGCATAACAAGACTCGGG
AGGGAGTAGCATTGGCTGTGGATTTGGGTTTTAGGGAGGTTAGAGTGGAAACAAACGCATCTCATGTGGCTTCTTTTCTTCAAAAACGCGAGTTTAGTAGAACTGAAGTG
GGTTTGATCATACACGAGGCTTTGACCTTAGCTACAACGTTGACGAAGGTACATTTTTCATGGTGTGCAAGAGATGCCAACGGTCTTGCTCATCACCTAGCTCGTATCGC
AGCAGAAGAGGTTTTGAATGCTAATTGGATGGAAGATGTTCTAGAGAATCTTAGAGAAGATTACATACTTGACGTGACGAATTCCCTTATCTAA
Protein sequenceShow/hide protein sequence
MRHLAYKEYVKWRMSNQFLQGVQMDAMLGADPVMERKNWRPPRDHLLKINTHATIYLQANRCGIEVIVHNKTREGVALAVDLGFREVRVETNASHVASFLQKREFSRTEV
GLIIHEALTLATTLTKVHFSWCARDANGLAHHLARIAAEEVLNANWMEDVLENLREDYILDVTNSLI