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Sed0008661 (gene) of Chayote v1 genome

Gene IDSed0008661
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG08:1927161..1927883
RNA-Seq ExpressionSed0008661
SyntenySed0008661
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010667851.1 PREDICTED: uncharacterized protein LOC104884846 [Beta vulgaris subsp. vulgaris]1.2e-1433.54Show/hide
Query:  PIGDIVKVNVNATICSQEGRIGIGVIAQNSYGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDE
        PIGD+ K+N +A++   +G IG+G + ++S GD M + C  ++G   VE AEA++ R G+ ++ E G R + +E D + +   +Q+R +  +  G I+ +
Subjt:  PIGDIVKVNVNATICSQEGRIGIGVIAQNSYGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDE

Query:  SLIFAARFLYVSFSWCNRQANSLAHSLSKM--AAMENLKIYVMEDVLETLQNGLLSEK
         L +A++  ++SF+   RQ N +AH L++M  +AME L++++ E  LE + N ++ +K
Subjt:  SLIFAARFLYVSFSWCNRQANSLAHSLSKM--AAMENLKIYVMEDVLETLQNGLLSEK

XP_012851712.1 PREDICTED: uncharacterized protein LOC105971405 [Erythranthe guttata]1.4e-1327.8Show/hide
Query:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLIPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG
        + W+ W  R+  +        C L+S       +C H+   YKSA++  N       +R   P    PP  ++VK+N +A   + E    +G++A++SYG
Subjt:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLIPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG

Query:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA
         C+      I G L     EA+A    I MA  +G   + LE D   V+  L SR +  +  G  ++E L     F   SF++  RQ N LAH +++++ 
Subjt:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA

Query:  MENLK
          +++
Subjt:  MENLK

XP_021763631.1 uncharacterized protein LOC110728264 [Chenopodium quinoa]8.1e-1428.44Show/hide
Query:  WRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPM-GL-IPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG
        W+IW  R       N   +  +  DP       +++F++Y +A    N+     +I R   + GL IPP     K+N +A+I S++ R G+G++ +++ G
Subjt:  WRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPM-GL-IPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG

Query:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA
        D M ++ K + G  ++   EAVA+  G+   ++ GFR++E+ +D   V+ +L       +    I+ + L FA  F +V FS+C R  N +AHS++ ++ 
Subjt:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA

Query:  MENLKIYVMED
          + + + MED
Subjt:  MENLKIYVMED

XP_023915006.1 uncharacterized protein LOC112026546 [Quercus suber]6.2e-1428.29Show/hide
Query:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLIPPIGDIVKVNVNATICSQEGR-IGIGVIAQNSY
        + W IW  R+  L + +        + P+Q WD  +    +YK A    N+ L    I   P     PP G   K+NV+    S +GR    GVI ++S 
Subjt:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLIPPIGDIVKVNVNATICSQEGR-IGIGVIAQNSY

Query:  GDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMA
        G  + + C+ +      + +EA+A++DG+M+A ELG  +V  E+D  +++  +   + G  E+G I+      A+ F + +F    R+ N  AH L++ A
Subjt:  GDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMA

Query:  AMENL
         M  +
Subjt:  AMENL

XP_027166351.1 uncharacterized protein LOC113766348 [Coffea eugenioides]1.4e-1328.36Show/hide
Query:  WRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLI----PPIGDIVKVNVNATICSQEGRIGIGVIAQNS
        W+IW  R       N   +    +DP +     V  +N+Y  A+ ++     G+ I++      I    PP    +K+N NA       R GIGV+A+N+
Subjt:  WRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLI----PPIGDIVKVNVNATICSQEGRIGIGVIAQNS

Query:  YGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKM
          + M  + +  +        EA A+R G+ MAW+  +R VEL++D + VV ML  +   +  +G I+++       F   +FS+ +R  N  AHS++K 
Subjt:  YGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKM

Query:  A
        A
Subjt:  A

TrEMBL top hitse value%identityAlignment
A0A2N9G7T9 Uncharacterized protein6.7e-1427.98Show/hide
Query:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLIPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG
        +CW IW RR+ +  K   D   H+   P   W++   + +  ++   N +           P      P     KVN +  +  Q    GIG++ +N+ G
Subjt:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLIPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG

Query:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA
        + + +  + I   L VEA EA+A R  +  A ELG   VE E D+  +   L    + R   G II+++   A R    SF    R  NS+AH+L++ A 
Subjt:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA

Query:  MENLKIYVMEDVLETLQN
          N+    ME V   +Q+
Subjt:  MENLKIYVMEDVLETLQN

A0A2N9HV89 Reverse transcriptase domain-containing protein3.9e-1429.56Show/hide
Query:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLI----PPIGDIVKVNVNATICSQEGRIGIGVIAQ
        + W +W RR+ L   H        ++DP    D  +H   D       + +    K     PP  L+    PP  ++ K N +  + S   + GIGVI +
Subjt:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLI----PPIGDIVKVNVNATICSQEGRIGIGVIAQ

Query:  NSYGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLS
        N  G  + +  + I     VE  EA A R+ I +A  LG ++V  E D+  ++  LQS        G +I++S +  A F + SFS   RQ NS+AH L+
Subjt:  NSYGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLS

Query:  KMA
        + A
Subjt:  KMA

A0A2N9IXD3 Uncharacterized protein2.3e-1429.36Show/hide
Query:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLIPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG
        +CW IW RR+ +  K   D   H+   P     F   Y  +++S++      L   + R  P      P     KVN +  + ++    GIG++ +N+ G
Subjt:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLIPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG

Query:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA
        + + +  + I   L VEA EA+A R  +  A ELG   VE E D+  +   L    + R   G II+++  FA R    SF    R  NS+AH+L++ A 
Subjt:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA

Query:  MENLKIYVMEDVLETLQN
          N+    ME V   +Q+
Subjt:  MENLKIYVMEDVLETLQN

A0A2N9J7Z5 Reverse transcriptase domain-containing protein3.9e-1429.56Show/hide
Query:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLI----PPIGDIVKVNVNATICSQEGRIGIGVIAQ
        + W +W RR+ L   H        ++DP    D  +H   D       + +    K     PP  L+    PP  ++ K N +  + S   + GIGVI +
Subjt:  MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLI----PPIGDIVKVNVNATICSQEGRIGIGVIAQ

Query:  NSYGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLS
        N  G  + +  + I     VE  EA A R+ I +A  LG ++V  E D+  ++  LQS        G +I++S +  A F + SFS   RQ NS+AH L+
Subjt:  NSYGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLS

Query:  KMA
        + A
Subjt:  KMA

A0A803L9N8 Uncharacterized protein3.9e-1428.44Show/hide
Query:  WRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPM-GL-IPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG
        W+IW  R       N   +  +  DP       +++F++Y +A    N+     +I R   + GL IPP     K+N +A+I S++ R G+G++ +++ G
Subjt:  WRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPM-GL-IPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYG

Query:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA
        D M ++ K + G  ++   EAVA+  G+   ++ GFR++E+ +D   V+ +L       +    I+ + L FA  F +V FS+C R  N +AHS++ ++ 
Subjt:  DCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAA

Query:  MENLKIYVMED
          + + + MED
Subjt:  MENLKIYVMED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G23320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.7e-0726.47Show/hide
Query:  PIGDIVKVNVNATICSQEGRIGIGVIAQNSYGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDE
        P  + VK N + +  +     G+  I +NS G C+   C    G   ++ AE  A+   I  AW+LG+RRVE E DN  V  +++++      +   ++ 
Subjt:  PIGDIVKVNVNATICSQEGRIGIGVIAQNSYGDCMFSFCKPIIGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDE

Query:  SLIFAARFLYVSFSWCNRQANSLAHSLSKMAAMENL
           ++  F  V F++ +R+ N     L+K A   ++
Subjt:  SLIFAARFLYVSFSWCNRQANSLAHSLSKMAAMENL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTTGGCGAATCTGGAGTAGAAGAAGTGGTTTGTTGGCAAAGCATAACAATGATACTTATTGTCATCTACTTTCGGATCCGACGCAAGATTGGGATTTTTGTGTGCA
CTATTTTAATGACTATAAGTCGGCTCGAATGAATTTGAATATGGGCTTGGGTGGGAAAGCTATTCGGCGTCATCCTCCTATGGGTTTGATCCCACCTATTGGTGATATAG
TTAAAGTTAATGTTAATGCAACAATTTGTAGTCAGGAGGGAAGGATCGGAATCGGGGTAATCGCACAAAATTCTTATGGGGATTGTATGTTTTCTTTTTGCAAACCTATC
ATTGGGGAGTTAGTTGTTGAAGCTGCAGAAGCCGTGGCTGTTCGTGATGGAATTATGATGGCGTGGGAGTTGGGGTTCAGACGGGTTGAGTTGGAAACTGATAATCAAGC
GGTTGTCCTTATGCTTCAATCACGATCTTTTGGGCGAACGGAGGTGGGGGGGATTATTGATGAATCTTTGATTTTTGCAGCGAGGTTCCTCTATGTGTCATTTTCTTGGT
GTAATCGTCAAGCAAATTCATTGGCTCATTCTCTCTCGAAGATGGCTGCGATGGAAAATTTGAAAATTTATGTGATGGAGGACGTTCTAGAAACTCTTCAGAATGGACTT
CTTTCAGAAAAACCTCGAGGTTTTGACTCGTGCGTGAGTTTAATTGATCCAAGTCATGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTTGGCGAATCTGGAGTAGAAGAAGTGGTTTGTTGGCAAAGCATAACAATGATACTTATTGTCATCTACTTTCGGATCCGACGCAAGATTGGGATTTTTGTGTGCA
CTATTTTAATGACTATAAGTCGGCTCGAATGAATTTGAATATGGGCTTGGGTGGGAAAGCTATTCGGCGTCATCCTCCTATGGGTTTGATCCCACCTATTGGTGATATAG
TTAAAGTTAATGTTAATGCAACAATTTGTAGTCAGGAGGGAAGGATCGGAATCGGGGTAATCGCACAAAATTCTTATGGGGATTGTATGTTTTCTTTTTGCAAACCTATC
ATTGGGGAGTTAGTTGTTGAAGCTGCAGAAGCCGTGGCTGTTCGTGATGGAATTATGATGGCGTGGGAGTTGGGGTTCAGACGGGTTGAGTTGGAAACTGATAATCAAGC
GGTTGTCCTTATGCTTCAATCACGATCTTTTGGGCGAACGGAGGTGGGGGGGATTATTGATGAATCTTTGATTTTTGCAGCGAGGTTCCTCTATGTGTCATTTTCTTGGT
GTAATCGTCAAGCAAATTCATTGGCTCATTCTCTCTCGAAGATGGCTGCGATGGAAAATTTGAAAATTTATGTGATGGAGGACGTTCTAGAAACTCTTCAGAATGGACTT
CTTTCAGAAAAACCTCGAGGTTTTGACTCGTGCGTGAGTTTAATTGATCCAAGTCATGTTTAA
Protein sequenceShow/hide protein sequence
MCWRIWSRRSGLLAKHNNDTYCHLLSDPTQDWDFCVHYFNDYKSARMNLNMGLGGKAIRRHPPMGLIPPIGDIVKVNVNATICSQEGRIGIGVIAQNSYGDCMFSFCKPI
IGELVVEAAEAVAVRDGIMMAWELGFRRVELETDNQAVVLMLQSRSFGRTEVGGIIDESLIFAARFLYVSFSWCNRQANSLAHSLSKMAAMENLKIYVMEDVLETLQNGL
LSEKPRGFDSCVSLIDPSHV