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Sed0008677 (gene) of Chayote v1 genome

Gene IDSed0008677
OrganismSechium edule (Chayote v1)
Description40S ribosomal protein S21
Genome locationLG04:32806004..32808093
RNA-Seq ExpressionSed0008677
SyntenySed0008677
Gene Ontology termsGO:0000447 - endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000461 - endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001931 - Ribosomal protein S21e
IPR018279 - Ribosomal protein S21e, conserved site
IPR038579 - Ribosomal protein S21e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134210.2 40S ribosomal protein S21-2 [Cucumis sativus]4.7e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQ+STFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

XP_004143089.1 40S ribosomal protein S21-2 [Cucumis sativus]1.4e-3796.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQ+STFALCGFIRAQGDADS LDRLWQKKK EVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

XP_022138287.1 40S ribosomal protein S21-2 [Momordica charantia]1.0e-3796.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQ+STFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

XP_022930553.1 40S ribosomal protein S21-2-like [Cucurbita moschata]1.4e-3795.12Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQ+STFALCG+IRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

XP_022959410.1 40S ribosomal protein S21-2 isoform X2 [Cucurbita moschata]2.3e-3793.9Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQ+STFALCG+IRAQGDADS +DRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

TrEMBL top hitse value%identityAlignment
A0A0A0L7W3 40S ribosomal protein S212.3e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQ+STFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

A0A1S4DSM1 40S ribosomal protein S212.3e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQ+STFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

A0A5D3CXC9 40S ribosomal protein S212.3e-3897.56Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQ+STFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

A0A6J1CCM4 40S ribosomal protein S215.0e-3896.34Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGH+DENGIYTGQ+STFALCGFIRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

A0A6J1KDN2 40S ribosomal protein S216.6e-3895.12Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEGKITELYIPRKCSATNRLITSKDHASVQIN+GHLDENGIYTGQ+STFALCG+IRAQGDADS LDRLWQKKKVEVRQQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

SwissProt top hitse value%identityAlignment
P35687 40S ribosomal protein S214.2e-3478.05Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        MQNEEG++ +LY+PRKCSATNR+IT+KDHASVQINIGH+DENG+Y G+++TFAL GFIRAQGDADS LDRLWQK+K EV+QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

Q3E902 40S ribosomal protein S21-28.3e-3886.42Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQ++TFALCGF+RAQGDADSG+DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ

Q41852 40S ribosomal protein S211.6e-3377.78Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ
        MQNEEGK  +LY+PRKCSATNR+IT+KDHASVQINIGHLD NG+Y G ++TFAL GF+RAQGDADS LDRLWQKKK E++Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ

Q9M337 40S ribosomal protein S21-11.2e-3681.71Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQ++TFALCGF+RAQGDADSG+DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

Q9SMI2 40S ribosomal protein S212.8e-2568Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQYSTFALCGFIRAQGDADSGLDRLWQK
        MQN+EGKI +LYIPRKCSATNRLI++ DHA+VQIN+GH+D N G+YTG Y+TFALCGF+R+ G++D+ L+RL  K
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDEN-GIYTGQYSTFALCGFIRAQGDADSGLDRLWQK

Arabidopsis top hitse value%identityAlignment
AT3G53890.1 Ribosomal protein S21e8.5e-3881.71Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQ++TFALCGF+RAQGDADSG+DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

AT3G53890.2 Ribosomal protein S21e8.5e-3881.71Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ
        M+N+ G++TELYIPRKCSATNR+ITSKDHASVQ+NIGHLD NG+YTGQ++TFALCGF+RAQGDADSG+DRLWQKKKVE +QQ
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ

AT5G27700.1 Ribosomal protein S21e5.9e-3986.42Show/hide
Query:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ
        MQNEEG++TELYIPRKCSATNRLITSKDHASVQ+NIGHLD NG+YTGQ++TFALCGF+RAQGDADSG+DRLWQKKKVE +Q
Subjt:  MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGGAAATGCTCTGCAACGAATAGACTCATCACCTCCAAGGACCATGCTTCGGTTCAGATTAACATCGG
GCACCTTGATGAGAATGGCATCTACACCGGCCAATACTCCACTTTTGCTCTCTGCGGTTTCATCCGTGCCCAGGGAGATGCCGACAGTGGTTTGGACAGGTTGTGGCAGA
AGAAGAAAGTAGAAGTTCGTCAACAATAG
mRNA sequenceShow/hide mRNA sequence
CACCCCAATCTCCCGCTTCGAACTTCCCCTCTCTAAGCAGTTGGCCGACTGATTCATCTCTAGATCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCC
TAGGAAATGCTCTGCAACGAATAGACTCATCACCTCCAAGGACCATGCTTCGGTTCAGATTAACATCGGGCACCTTGATGAGAATGGCATCTACACCGGCCAATACTCCA
CTTTTGCTCTCTGCGGTTTCATCCGTGCCCAGGGAGATGCCGACAGTGGTTTGGACAGGTTGTGGCAGAAGAAGAAAGTAGAAGTTCGTCAACAATAGGGAATGAAAAAT
TTTCTTCTGTTTAGAGGTTGATTTCTATTTGAGATATTTTGTTATATTGCGAATTATGAATATTGAGAGAATGATGTGTTAACCTTTTGATCAACGTTTCCAAATTGTAG
TGTTTGTTGGAATCTTTTGTGAAGTTTTTTTTTTATTATTATCATTTAATATTGGATTCA
Protein sequenceShow/hide protein sequence
MQNEEGKITELYIPRKCSATNRLITSKDHASVQINIGHLDENGIYTGQYSTFALCGFIRAQGDADSGLDRLWQKKKVEVRQQ